Rh5CG479900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0019514
Physical Location & Seq
Reverse (-)
66933531 .. 66934435
905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG479900.1

Sequence Viewer

Length: 390 bp
ATGGCAACGACTTGGTGGAGGCACTTTAGGGTTTCGGGTCCACGACCTCCTCTGGGGTGGATCTACTTCTCAAGTAAAGGCCGGGAGAAAAAGAAAGATGGATGGAGAGCTTTGATTCGTGATCATATTCCAATTGTGTCTATATTGCAGCATCCGAAAAGAGCAGCAGCGGCAAAGAAACCAAAAACACCGAAACAACTGCAAGTGACCTCCAAGGAAAAATTGAAGAAGCTTCAGAATGAAGGAAAAGTCTCAAAACTTGCGTCCACCAGAAGAAGGTCAAAGCCTACAACTGCACAGTCTGTGCAAGGTCCTACACCCCCACCTATTCAAGCTTGTGGTTCACAACCAACACAGGCTAGCAAGACATTAGAATTTGCTGCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.48

Weight (kDa)

11.34

Isoelectric Point (pI)

49.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019514)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004716.1_g000002
rosa_roxburghii Rroxscaffold_2G00107110
rosa_samantha Rh4AG015000 Rh4BG008600 Rh5BG458100 Rh5BG483100 Rh5CG479900
rosa_wichuraiana Rw3G027880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 170
AclWI GGATC 1 cut(s) 68
AcsI RAATTY 1 cut(s) 374
AcuI CTGAAG 1 cut(s) 218
AfiI CCNNNNNNNGG 2 cut(s) 53, 276
AgsI TTSAA 2 cut(s) 226, 332
AluBI AGCT 3 cut(s) 110, 232, 335
AluI AGCT 3 cut(s) 110, 232, 335
Alw26I GTCTC 1 cut(s) 256
AlwI GGATC 1 cut(s) 68
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 4 cut(s) 148, 164, 167, 380
ApoI RAATTY 1 cut(s) 374
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
AspS9I GGNCC 2 cut(s) 38, 311
AsuC2I CCSGG 1 cut(s) 83
AsuNHI GCTAGC 1 cut(s) 359
AvaII GGWCC 2 cut(s) 38, 311
BbvI GCAGC 4 cut(s) 160, 176, 179, 367
BccI CCATC 2 cut(s) 92, 96
BcgI CGANNNNNNTGC 2 cut(s) 181, 215
BclI TGATCA 1 cut(s) 121
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 1 cut(s) 360
BisI GCNGC 5 cut(s) 149, 165, 168, 171, 381
BlsI GCNGC 5 cut(s) 150, 166, 169, 172, 382
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 2 cut(s) 38, 311
BmgT120I GGNCC 2 cut(s) 38, 311
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 160
BmtI GCTAGC 1 cut(s) 363
BpuEI CTTGAG 1 cut(s) 55
BpuMI CCSGG 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 213
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 276
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 2 cut(s) 107, 151
BseLI CCNNNNNNNGG 2 cut(s) 53, 276
BseRI GAGGAG 1 cut(s) 39
BseXI GCAGC 4 cut(s) 160, 176, 179, 367
BsgI GTGCAG 1 cut(s) 279
BshFI GGCC 1 cut(s) 81
BsiSI CCGG 1 cut(s) 82
BslI CCNNNNNNNGG 2 cut(s) 53, 276
BsmAI GTCTC 1 cut(s) 256
BsnI GGCC 1 cut(s) 81
Bsp143I GATC 2 cut(s) 60, 121
BspACI CCGC 1 cut(s) 170
BspANI GGCC 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 39
BspOI GCTAGC 1 cut(s) 363
BspPI GGATC 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 2 cut(s) 60, 121
BssT1I CCWWGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 361
BstF5I GGATG 2 cut(s) 107, 151
BstKTI GATC 2 cut(s) 63, 124
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 2 cut(s) 60, 121
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 81
BstV1I GCAGC 4 cut(s) 160, 176, 179, 367
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BsuRI GGCC 1 cut(s) 81
BtsCI GGATG 2 cut(s) 107, 151
Cac8I GCNNGC 1 cut(s) 361
Cfr13I GGNCC 2 cut(s) 38, 311
CseI GACGC 1 cut(s) 252
CviJI RGCY 6 cut(s) 81, 110, 232, 286, 335, 359
CviKI_1 RGCY 6 cut(s) 81, 110, 232, 286, 335, 359
DpnI GATC 2 cut(s) 62, 123
DpnII GATC 2 cut(s) 60, 121
Eco130I CCWWGG 1 cut(s) 213
Eco47I GGWCC 2 cut(s) 38, 311
Eco57I CTGAAG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 311
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
FaiI YATR 2 cut(s) 126, 143
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 5 cut(s) 149, 165, 168, 171, 381
FokI GGATG 2 cut(s) 114, 138
Fsp4HI GCNGC 5 cut(s) 149, 165, 168, 171, 381
FspBI CTAG 1 cut(s) 360
GluI GCNGC 5 cut(s) 149, 165, 168, 171, 381
HaeIII GGCC 1 cut(s) 81
HapII CCGG 1 cut(s) 82
HgaI GACGC 1 cut(s) 252
HindIII AAGCTT 2 cut(s) 230, 333
HinfI GANTC 1 cut(s) 115
HpaII CCGG 1 cut(s) 82
Hpy166II GTNNAC 3 cut(s) 41, 267, 344
Hpy188I TCNGA 2 cut(s) 156, 237
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 3 cut(s) 41, 267, 344
HpyAV CCTTC 2 cut(s) 236, 270
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4V TGCA 4 cut(s) 148, 202, 296, 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 2 cut(s) 60, 121
LpnPI CCDG 4 cut(s) 38, 95, 283, 341
Lsp1109I GCAGC 4 cut(s) 160, 176, 179, 367
LweI GCATC 1 cut(s) 160
MaeI CTAG 1 cut(s) 360
MaeIII GTNAC 1 cut(s) 205
MalI GATC 2 cut(s) 62, 123
MboI GATC 2 cut(s) 60, 121
MboII GAAGA 2 cut(s) 238, 285
MfeI CAATTG 1 cut(s) 132
MflI RGATCY 1 cut(s) 60
MluCI AATT 3 cut(s) 132, 221, 374
MnlI CCTC 4 cut(s) 12, 57, 60, 220
MseI TTAA 1 cut(s) 388
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 1 cut(s) 82
MspR9I CCNGG 1 cut(s) 83
MunI CAATTG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 170
NciI CCSGG 1 cut(s) 83
NdeII GATC 2 cut(s) 60, 121
NheI GCTAGC 1 cut(s) 359
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 205
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 5 cut(s) 150, 166, 169, 172, 382
PpuMI RGGWCCY 1 cut(s) 311
Psp5II RGGWCCY 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 2 cut(s) 38, 311
PspPPI RGGWCCY 1 cut(s) 311
PsuI RGATCY 1 cut(s) 60
SaqAI TTAA 1 cut(s) 388
SatI GCNGC 5 cut(s) 149, 165, 168, 171, 381
Sau3AI GATC 2 cut(s) 60, 121
Sau96I GGNCC 2 cut(s) 38, 311
ScrFI CCNGG 1 cut(s) 83
SetI ASST 8 cut(s) 49, 112, 212, 234, 281, 313, 328, 337
SfaNI GCATC 1 cut(s) 160
SinI GGWCC 2 cut(s) 38, 311
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
Sse9I AATT 3 cut(s) 132, 221, 374
SsiI CCGC 1 cut(s) 170
SspMI CTAG 1 cut(s) 360
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 300
TasI AATT 3 cut(s) 132, 221, 374
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 1 cut(s) 388
Tru9I TTAA 1 cut(s) 388
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 4 cut(s) 148, 164, 167, 380
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 255
VpaK11BI GGWCC 2 cut(s) 38, 311
XapI RAATTY 1 cut(s) 374
XspI CTAG 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.