Rw3G027880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0019514
Physical Location & Seq
Forward (+)
40493820 .. 40497324
3505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G027880.1

Sequence Viewer

Length: 1104 bp
ATGAATAACATAGCCTGGGATTTGGGGTATAGGGAAAAACCAATATCCTACTACTATAAGCTGCCAGGGTCATCAAGTAGTGAAGGGTGGATGAAGCTGCTTGGTGATGGAGATTGTGTGGAGATGATTAATCAACTTCCTAAAAGAAAAAGGATTATTGAAGTTTACATAACTGGGGGTGGACCAAGAAAGAAGAGGGAAGCTGAACTAGATGATGAGCATCCACCAGATCCGAGTTGGCATAATCCATTGAATAATGCGGGTACAATAGACAATGAGAATATGATTGATGAGGCTAGTTTGCTTTGCAGCCAATTAAATGCAGAGAGTGACAATGTGGTTGAAGATAGTAATGTTCCTGAGAATAAAGGCCCGGAGGTGGTTGAAGTGTGTGGTACAGCAGATACCCTATTGTCAGTTAGGGACTTTGCAAGTATAGGTGAGGTTGTTAACTTGTTTGGTGATACGCATAGTAGTATAAGGGATGAGGGGCAGTCTAGTCATTGCATTGACTTGGAAAAAATAAGTGAAGGAAAAGAATCTAATGTGAAGATGGTGACAAAAGCTGCCAACAAGACATGTGGGATTGTTGCAGCAGAAAATGAGATGATAAAAGACTCTGGAGCACATAAGCAAGTTGCAGCACAAAAAGCTAATAATGGGGTGAAAGGGAAGCAAACAGAAGTTGTTGAAGAAGAAATCGAAGAAAAGAAAGGATCACAATATGTGAATATAAGTTGCAAAATATGTCATCAGAAAGGTCATAACAAAAATGGATGTCCAACTACCAAGGCTTCCACAGCTAAATCCCAGGGTGGATCTACTTCTCAAGTAAAGGCTGGGAGAAAAAGAAAGATGGATGGAGAGCCGAAAAGAGCAGCAGCGGCAAAGAAACCAAAAACACCGAAACAACTGCAAGTGACCTCCAAGGAAAAATTGAAGAAGCTTCAGAATGAAGGAAAAGTCCCAAAACCTGCGTCCACCAGAAGAAGGTCAAAACCTACAACTGCACAGTCTGTGCAAGGTCCTACACCCCCACCTATTCAAGCTTGTGGTTCACAACCAACACAGGCTAGCAAGACATCAGAATTTGCTGCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

367

Amino Acids

39.84

Weight (kDa)

8.68

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019514)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004716.1_g000002
rosa_roxburghii Rroxscaffold_2G00107110
rosa_samantha Rh4AG015000 Rh4BG008600 Rh5BG458100 Rh5BG483100 Rh5CG479900
rosa_wichuraiana Rw3G027880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 982
AciI CCGC 2 cut(s) 260, 884
AclWI GGATC 3 cut(s) 224, 724, 826
AcsI RAATTY 1 cut(s) 1088
AcuI CTGAAG 1 cut(s) 932
AfaI GTAC 2 cut(s) 265, 397
AfiI CCNNNNNNNGG 2 cut(s) 379, 990
AflIII ACRYGT 1 cut(s) 578
AgsI TTSAA 7 cut(s) 161, 253, 344, 386, 692, 940, 1046
AjnI CCWGG 3 cut(s) 14, 64, 810
AluBI AGCT 8 cut(s) 61, 97, 203, 566, 653, 803, 946, 1049
AluI AGCT 8 cut(s) 61, 97, 203, 566, 653, 803, 946, 1049
Alw21I GWGCWC 1 cut(s) 628
AlwI GGATC 3 cut(s) 224, 724, 826
AoxI GGCC 1 cut(s) 370
ApeKI GCWGC 9 cut(s) 61, 97, 309, 566, 593, 641, 878, 881, 1094
ApoI RAATTY 1 cut(s) 1088
ArsI GACNNNNNNTTYG 2 cut(s) 962, 994
AseI ATTAAT 1 cut(s) 129
AspS9I GGNCC 3 cut(s) 182, 371, 1025
AsuC2I CCSGG 1 cut(s) 374
AsuHPI GGTGA 5 cut(s) 116, 452, 473, 568, 676
AsuNHI GCTAGC 1 cut(s) 1073
AvaII GGWCC 2 cut(s) 182, 1025
Bbv12I GWGCWC 1 cut(s) 628
BbvI GCAGC 9 cut(s) 48, 84, 321, 553, 605, 653, 890, 893, 1081
BccI CCATC 4 cut(s) 101, 547, 850, 854
BcgI CGANNNNNNTGC 2 cut(s) 895, 929
BciT130I CCWGG 3 cut(s) 16, 66, 812
BcnI CCSGG 1 cut(s) 374
BfaI CTAG 4 cut(s) 209, 297, 498, 1074
BfuAI ACCTGC 1 cut(s) 982
Bme1390I CCNGG 4 cut(s) 16, 66, 374, 812
Bme18I GGWCC 2 cut(s) 182, 1025
BmgT120I GGNCC 3 cut(s) 182, 371, 1025
BmrFI CCNGG 4 cut(s) 16, 66, 374, 812
BmrI ACTGGG 1 cut(s) 183
BmsI GCATC 1 cut(s) 229
BmtI GCTAGC 1 cut(s) 1077
BmuI ACTGGG 1 cut(s) 183
BpmI CTGGAG 1 cut(s) 642
BpuEI CTTGAG 1 cut(s) 813
BpuMI CCSGG 1 cut(s) 374
BsaBI GATNNNNATC 1 cut(s) 219
BsaJI CCNNGG 6 cut(s) 15, 65, 789, 810, 811, 927
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 2 cut(s) 379, 990
Bse1I ACTGG 1 cut(s) 178
Bse3DI GCAATG 1 cut(s) 502
Bse8I GATNNNNATC 1 cut(s) 219
BseBI CCWGG 3 cut(s) 16, 66, 812
BseDI CCNNGG 6 cut(s) 15, 65, 789, 810, 811, 927
BseGI GGATG 5 cut(s) 96, 220, 490, 782, 865
BseJI GATNNNNATC 1 cut(s) 219
BseLI CCNNNNNNNGG 2 cut(s) 379, 990
BseMI GCAATG 1 cut(s) 502
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 1 cut(s) 178
BseXI GCAGC 9 cut(s) 48, 84, 321, 553, 605, 653, 890, 893, 1081
BseYI CCCAGC 1 cut(s) 839
BsgI GTGCAG 1 cut(s) 993
BshFI GGCC 1 cut(s) 372
BsiHKAI GWGCWC 1 cut(s) 628
BsiSI CCGG 1 cut(s) 374
BslFI GGGAC 2 cut(s) 437, 950
BslI CCNNNNNNNGG 2 cut(s) 379, 990
BsmFI GGGAC 2 cut(s) 437, 950
BsnI GGCC 1 cut(s) 372
Bsp1286I GDGCHC 1 cut(s) 628
Bsp143I GATC 3 cut(s) 229, 716, 818
BspACI CCGC 2 cut(s) 260, 884
BspANI GGCC 1 cut(s) 372
BspCNI CTCAG 1 cut(s) 352
BspMI ACCTGC 1 cut(s) 982
BspOI GCTAGC 1 cut(s) 1077
BspPI GGATC 3 cut(s) 224, 724, 826
BsrDI GCAATG 1 cut(s) 502
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 6 cut(s) 15, 65, 789, 810, 811, 927
BssMI GATC 3 cut(s) 229, 716, 818
BssT1I CCWWGG 2 cut(s) 789, 927
Bst2UI CCWGG 3 cut(s) 16, 66, 812
Bst4CI ACNGT 1 cut(s) 1014
Bst6I CTCTTC 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 1075
BstDEI CTNAG 1 cut(s) 360
BstF5I GGATG 5 cut(s) 96, 220, 490, 782, 865
BstKTI GATC 3 cut(s) 232, 719, 821
BstMBI GATC 3 cut(s) 229, 716, 818
BstMWI GCNNNNNNNGC 3 cut(s) 650, 800, 884
BstNI CCWGG 3 cut(s) 16, 66, 812
BstNSI RCATGY 1 cut(s) 582
BstSCI CCNGG 4 cut(s) 14, 64, 372, 810
BstV1I GCAGC 9 cut(s) 48, 84, 321, 553, 605, 653, 890, 893, 1081
BstX2I RGATCY 2 cut(s) 229, 818
BstYI RGATCY 2 cut(s) 229, 818
BsuRI GGCC 1 cut(s) 372
BtsCI GGATG 5 cut(s) 96, 220, 490, 782, 865
BveI ACCTGC 1 cut(s) 982
Cac8I GCNNGC 1 cut(s) 1075
Cfr13I GGNCC 3 cut(s) 182, 371, 1025
CseI GACGC 1 cut(s) 966
Csp6I GTAC 2 cut(s) 264, 396
CspCI CAANNNNNGTGG 2 cut(s) 562, 597
CviAII CATG 1 cut(s) 579
CviQI GTAC 2 cut(s) 264, 396
DdeI CTNAG 1 cut(s) 360
DpnI GATC 3 cut(s) 231, 718, 820
DpnII GATC 3 cut(s) 229, 716, 818
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Eco130I CCWWGG 2 cut(s) 789, 927
Eco47I GGWCC 2 cut(s) 182, 1025
Eco57I CTGAAG 1 cut(s) 932
EcoO109I RGGNCCY 1 cut(s) 1025
EcoRII CCWGG 3 cut(s) 14, 64, 810
EcoT14I CCWWGG 2 cut(s) 789, 927
ErhI CCWWGG 2 cut(s) 789, 927
FaeI CATG 1 cut(s) 582
FaqI GGGAC 2 cut(s) 437, 950
FatI CATG 1 cut(s) 578
FauI CCCGC 1 cut(s) 253
FokI GGATG 5 cut(s) 103, 207, 497, 789, 872
FspBI CTAG 4 cut(s) 209, 297, 498, 1074
GsaI CCCAGC 1 cut(s) 843
GsuI CTGGAG 1 cut(s) 642
HaeIII GGCC 1 cut(s) 372
HapII CCGG 1 cut(s) 374
HgaI GACGC 1 cut(s) 966
Hin1II CATG 1 cut(s) 582
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HindIII AAGCTT 2 cut(s) 944, 1047
HinfI GANTC 2 cut(s) 539, 617
HpaI GTTAAC 1 cut(s) 451
HpaII CCGG 1 cut(s) 374
HphI GGTGA 5 cut(s) 116, 452, 473, 568, 676
Hpy166II GTNNAC 5 cut(s) 166, 182, 451, 981, 1058
Hpy188I TCNGA 4 cut(s) 234, 756, 951, 1087
Hpy188III TCNNGA 2 cut(s) 359, 621
Hpy8I GTNNAC 5 cut(s) 166, 182, 451, 981, 1058
HpyAV CCTTC 4 cut(s) 77, 524, 950, 984
HpyCH4III ACNGT 1 cut(s) 1014
HpyF10VI GCNNNNNNNGC 3 cut(s) 650, 800, 884
HpyF3I CTNAG 1 cut(s) 360
Hsp92II CATG 1 cut(s) 582
KspAI GTTAAC 1 cut(s) 451
Kzo9I GATC 3 cut(s) 229, 716, 818
LmnI GCTCC 1 cut(s) 623
Lsp1109I GCAGC 9 cut(s) 48, 84, 321, 553, 605, 653, 890, 893, 1081
LweI GCATC 1 cut(s) 229
MaeI CTAG 4 cut(s) 209, 297, 498, 1074
MaeIII GTNAC 3 cut(s) 329, 556, 919
MalI GATC 3 cut(s) 231, 718, 820
MboI GATC 3 cut(s) 229, 716, 818
MboII GAAGA 8 cut(s) 205, 356, 562, 704, 707, 716, 952, 999
MflI RGATCY 2 cut(s) 229, 818
MhlI GDGCHC 1 cut(s) 628
MluCI AATT 3 cut(s) 314, 935, 1088
MlyI GAGTC 1 cut(s) 611
MmeI TCCRAC 1 cut(s) 806
MnlI CCTC 6 cut(s) 189, 286, 370, 436, 481, 934
MseI TTAA 4 cut(s) 129, 317, 450, 1102
MspA1I CMGCKG 1 cut(s) 884
MspI CCGG 1 cut(s) 374
MspR9I CCNGG 4 cut(s) 16, 66, 374, 812
MvaI CCWGG 3 cut(s) 16, 66, 812
MwoI GCNNNNNNNGC 3 cut(s) 650, 800, 884
NciI CCSGG 1 cut(s) 374
NdeII GATC 3 cut(s) 229, 716, 818
NheI GCTAGC 1 cut(s) 1073
NlaIII CATG 1 cut(s) 582
NmuCI GTSAC 3 cut(s) 329, 556, 919
NspI RCATGY 1 cut(s) 582
PasI CCCWGGG 1 cut(s) 811
PciI ACATGT 1 cut(s) 578
PfeI GAWTC 1 cut(s) 539
PleI GAGTC 1 cut(s) 611
PpsI GAGTC 1 cut(s) 611
PpuMI RGGWCCY 1 cut(s) 1025
PscI ACATGT 1 cut(s) 578
PshBI ATTAAT 1 cut(s) 129
Psp5II RGGWCCY 1 cut(s) 1025
Psp6I CCWGG 3 cut(s) 14, 64, 810
PspFI CCCAGC 1 cut(s) 839
PspGI CCWGG 3 cut(s) 14, 64, 810
PspPI GGNCC 3 cut(s) 182, 371, 1025
PspPPI RGGWCCY 1 cut(s) 1025
PsuI RGATCY 2 cut(s) 229, 818
RsaI GTAC 2 cut(s) 265, 397
RsaNI GTAC 2 cut(s) 264, 396
SaqAI TTAA 4 cut(s) 129, 317, 450, 1102
Sau3AI GATC 3 cut(s) 229, 716, 818
Sau96I GGNCC 3 cut(s) 182, 371, 1025
SchI GAGTC 1 cut(s) 611
ScrFI CCNGG 4 cut(s) 16, 66, 374, 812
SduI GDGCHC 1 cut(s) 628
SfaNI GCATC 1 cut(s) 229
SinI GGWCC 2 cut(s) 182, 1025
SmlI CTYRAG 1 cut(s) 828
SmoI CTYRAG 1 cut(s) 828
Sse9I AATT 3 cut(s) 314, 935, 1088
SsiI CCGC 2 cut(s) 260, 884
SspMI CTAG 4 cut(s) 209, 297, 498, 1074
StyD4I CCNGG 4 cut(s) 14, 64, 372, 810
StyI CCWWGG 2 cut(s) 789, 927
TaaI ACNGT 1 cut(s) 1014
TaqI TCGA 1 cut(s) 702
TasI AATT 3 cut(s) 314, 935, 1088
TauI GCSGC 1 cut(s) 887
TfiI GAWTC 1 cut(s) 539
Tru1I TTAA 4 cut(s) 129, 317, 450, 1102
Tru9I TTAA 4 cut(s) 129, 317, 450, 1102
TseFI GTSAC 3 cut(s) 329, 556, 919
TseI GCWGC 9 cut(s) 61, 97, 309, 566, 593, 641, 878, 881, 1094
Tsp45I GTSAC 3 cut(s) 329, 556, 919
TspDTI ATGAA 3 cut(s) 17, 107, 969
VpaK11BI GGWCC 2 cut(s) 182, 1025
VspI ATTAAT 1 cut(s) 129
XapI RAATTY 1 cut(s) 1088
XceI RCATGY 1 cut(s) 582
XcmI CCANNNNNNNNNTGG 1 cut(s) 234
XspI CTAG 4 cut(s) 209, 297, 498, 1074
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.