Rroxscaffold_2G00107110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0019514
Physical Location & Seq
Forward (+)
30821691 .. 30822675
985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00107110.1

Sequence Viewer

Length: 384 bp
ATGTCATCGAAAGGTCATAACAAAAATGGATGTCCAACTACCAAGGCTTCCACATCTAAATCCCAGGGTGGATCTACTTCTCAAGTAAAGGCTGGGAGAAAAAGAAAGGTGGATGGAGAGCCGAAAAGAGCAGCAGCGGCAAAGAAACCAAAAACACCGAAACAACTGCAAGTGACCTCCAAGGAAAAATTGAAGAAGCTTCGGAATGAAGGAAAAGTCCCAAAACCTGCGTCCACCGAAGAAGGTCAAAACCTACAACTGCACAGTCTGTGCAAGGTCCTATTCAAGCTTGTGGTTCACAACCAACACGGGCTAGCAAGACATCGAATTTGCTGCTTTTTAAGTCCCATATTGGAGTCTGCCATATATATGCAATCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.9

Weight (kDa)

10.34

Isoelectric Point (pI)

48.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019514)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004716.1_g000002
rosa_roxburghii Rroxscaffold_2G00107110
rosa_samantha Rh4AG015000 Rh4BG008600 Rh5BG458100 Rh5BG483100 Rh5CG479900
rosa_wichuraiana Rw3G027880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 235
AciI CCGC 1 cut(s) 137
AclWI GGATC 1 cut(s) 79
AcsI RAATTY 1 cut(s) 327
AgsI TTSAA 2 cut(s) 193, 286
AjnI CCWGG 1 cut(s) 63
AluBI AGCT 2 cut(s) 199, 289
AluI AGCT 2 cut(s) 199, 289
AlwI GGATC 1 cut(s) 79
ApeKI GCWGC 3 cut(s) 131, 134, 333
ApoI RAATTY 1 cut(s) 327
ArsI GACNNNNNNTTYG 4 cut(s) 215, 247, 312, 344
AspS9I GGNCC 1 cut(s) 277
AsuNHI GCTAGC 1 cut(s) 313
AvaII GGWCC 1 cut(s) 277
BbvI GCAGC 3 cut(s) 143, 146, 320
BccI CCATC 1 cut(s) 107
BcgI CGANNNNNNTGC 4 cut(s) 148, 182, 315, 349
BciT130I CCWGG 1 cut(s) 65
BfaI CTAG 1 cut(s) 314
BfuAI ACCTGC 1 cut(s) 235
BisI GCNGC 4 cut(s) 132, 135, 138, 334
BlsI GCNGC 4 cut(s) 133, 136, 139, 335
Bme1390I CCNGG 1 cut(s) 65
Bme18I GGWCC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 277
BmrFI CCNGG 1 cut(s) 65
BmtI GCTAGC 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 66
BsaJI CCNNGG 4 cut(s) 42, 63, 64, 180
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 4 cut(s) 42, 63, 64, 180
BseGI GGATG 2 cut(s) 35, 118
BseXI GCAGC 3 cut(s) 143, 146, 320
BseYI CCCAGC 1 cut(s) 92
BsgI GTGCAG 1 cut(s) 245
BslFI GGGAC 2 cut(s) 203, 330
BsmFI GGGAC 2 cut(s) 203, 330
Bsp143I GATC 1 cut(s) 71
BspACI CCGC 1 cut(s) 137
BspMI ACCTGC 1 cut(s) 235
BspOI GCTAGC 1 cut(s) 317
BspPI GGATC 1 cut(s) 79
BssECI CCNNGG 4 cut(s) 42, 63, 64, 180
BssMI GATC 1 cut(s) 71
BssT1I CCWWGG 2 cut(s) 42, 180
Bst2UI CCWGG 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 315
BstF5I GGATG 2 cut(s) 35, 118
BstKTI GATC 1 cut(s) 74
BstMBI GATC 1 cut(s) 71
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 63
BstV1I GCAGC 3 cut(s) 143, 146, 320
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BtsCI GGATG 2 cut(s) 35, 118
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 1 cut(s) 315
Cfr13I GGNCC 1 cut(s) 277
CseI GACGC 1 cut(s) 219
CviJI RGCY 6 cut(s) 47, 92, 121, 199, 289, 313
CviKI_1 RGCY 6 cut(s) 47, 92, 121, 199, 289, 313
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
Eco130I CCWWGG 2 cut(s) 42, 180
Eco47I GGWCC 1 cut(s) 277
EcoO109I RGGNCCY 1 cut(s) 277
EcoRII CCWGG 1 cut(s) 63
EcoT14I CCWWGG 2 cut(s) 42, 180
ErhI CCWWGG 2 cut(s) 42, 180
FaiI YATR 6 cut(s) 18, 350, 365, 367, 369, 371
FaqI GGGAC 2 cut(s) 203, 330
Fnu4HI GCNGC 4 cut(s) 132, 135, 138, 334
FokI GGATG 2 cut(s) 42, 125
Fsp4HI GCNGC 4 cut(s) 132, 135, 138, 334
FspBI CTAG 1 cut(s) 314
GluI GCNGC 4 cut(s) 132, 135, 138, 334
GsaI CCCAGC 1 cut(s) 96
HgaI GACGC 1 cut(s) 219
HindIII AAGCTT 2 cut(s) 197, 287
HinfI GANTC 1 cut(s) 356
Hpy166II GTNNAC 2 cut(s) 234, 298
Hpy188I TCNGA 1 cut(s) 204
Hpy8I GTNNAC 2 cut(s) 234, 298
HpyAV CCTTC 2 cut(s) 203, 236
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4V TGCA 4 cut(s) 169, 262, 273, 373
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
Kzo9I GATC 1 cut(s) 71
LpnPI CCDG 4 cut(s) 50, 77, 78, 240
Lsp1109I GCAGC 3 cut(s) 143, 146, 320
MaeI CTAG 1 cut(s) 314
MaeIII GTNAC 1 cut(s) 172
MalI GATC 1 cut(s) 73
MboI GATC 1 cut(s) 71
MboII GAAGA 2 cut(s) 205, 251
MflI RGATCY 1 cut(s) 71
MluCI AATT 2 cut(s) 188, 327
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 1 cut(s) 59
MnlI CCTC 1 cut(s) 187
MseI TTAA 1 cut(s) 341
MslI CAYNNNNRTG 1 cut(s) 368
MspA1I CMGCKG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 1 cut(s) 71
NheI GCTAGC 1 cut(s) 313
NmuCI GTSAC 1 cut(s) 172
PasI CCCWGGG 1 cut(s) 64
PkrI GCNGC 4 cut(s) 133, 136, 139, 335
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PpuMI RGGWCCY 1 cut(s) 277
Psp5II RGGWCCY 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 63
PspFI CCCAGC 1 cut(s) 92
PspGI CCWGG 1 cut(s) 63
PspPI GGNCC 1 cut(s) 277
PspPPI RGGWCCY 1 cut(s) 277
PsuI RGATCY 1 cut(s) 71
RseI CAYNNNNRTG 1 cut(s) 368
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 4 cut(s) 132, 135, 138, 334
Sau3AI GATC 1 cut(s) 71
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 1 cut(s) 65
SetI ASST 9 cut(s) 16, 111, 179, 201, 229, 247, 255, 279, 291
SinI GGWCC 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
Sse9I AATT 2 cut(s) 188, 327
SsiI CCGC 1 cut(s) 137
SspMI CTAG 1 cut(s) 314
StyD4I CCNGG 1 cut(s) 63
StyI CCWWGG 2 cut(s) 42, 180
TaaI ACNGT 1 cut(s) 266
TaqI TCGA 2 cut(s) 8, 325
TasI AATT 2 cut(s) 188, 327
TauI GCSGC 1 cut(s) 140
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 3 cut(s) 131, 134, 333
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 1 cut(s) 222
VpaK11BI GGWCC 1 cut(s) 277
XapI RAATTY 1 cut(s) 327
XspI CTAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.