Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004874.1

Orthogroup ID

OG0017051

Physical Location & Seq

Genomic Coordinates Reverse (-)

8153 .. 8599

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004874.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atggtaagacaatgggtgaaattatgcttgagagcaacagaggaagcttttaaaggtggatggtttagaagtggggatttagctatgaaacatcctgataaatatatcgaagtcaaggaccggttgaaggatgtgattatatctgggggagagaacataagcacagttgatgttaaaacagttttgtttagccatccagcagttcttgaggctgcaattgttgcaaggcctgataatcattggggacaaactccttgtgcatttgtgaaattgaaggatggctttgatgtgaatgcgcaagaactaattgagttctgccgcgatcatatgcctcattacatggcaccccggacagtcattttcgatgatatgccaaagacttcaacaggaaagatacaaaaattcgttctcagagaaaaagctaaggtcttgcgcatatatatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

148

Amino Acids

16.96

Weight (kDa)

8.99

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75960 AT5G16340 AT5G16370
rosa_chinensis	RchiOBHm_Chr2g0097621 RchiOBHm_Chr3g0449281
rosa_multiflora	Rmu_sc0004874.1_g000002 Rmu_sc0005347.1_g000004
rosa_rugosa	Rorug02G0619300
rosa_samantha	Rh2AG114300 Rh2BG117000 Rh2CG119000 Rh2DG118000 Rh6DG138900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	297, 434
AccB1I	GGYRCC	1 cut(s)	343
AccII	CGCG	1 cut(s)	321
AciI	CCGC	1 cut(s)	319
AcsI	RAATTY	1 cut(s)	401
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgeI	ACCGGT	1 cut(s)	120
AgsI	TTSAA	3 cut(s)	127, 274, 384
AluBI	AGCT	3 cut(s)	47, 83, 422
AluI	AGCT	3 cut(s)	47, 83, 422
AoxI	GGCC	1 cut(s)	227
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	401
AsiGI	ACCGGT	1 cut(s)	120
AspLEI	GCGC	2 cut(s)	298, 435
AspS9I	GGNCC	1 cut(s)	118
AsuC2I	CCSGG	1 cut(s)	349
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	118
BanI	GGYRCC	1 cut(s)	343
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	3 cut(s)	54, 201, 272
BcnI	CCSGG	1 cut(s)	349
BisI	GCNGC	2 cut(s)	213, 319
BlsI	GCNGC	2 cut(s)	214, 320
Bme1390I	CCNGG	1 cut(s)	349
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	345
BmrFI	CCNGG	1 cut(s)	349
Bpu10I	CCTNAGC	1 cut(s)	423
BpuEI	CTTGAG	2 cut(s)	49, 227
BpuMI	CCSGG	1 cut(s)	349
BsaJI	CCNNGG	1 cut(s)	347
BsaWI	WCCGGW	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse118I	RCCGGY	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	347
BseGI	GGATG	5 cut(s)	65, 91, 136, 193, 283
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	424
BseXI	GCAGC	1 cut(s)	199
Bsh1236I	CGCG	1 cut(s)	321
BshFI	GGCC	1 cut(s)	229
BshNI	GGYRCC	1 cut(s)	343
BshTI	ACCGGT	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	121, 349
BslFI	GGGAC	1 cut(s)	258
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	258
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	322
BspACI	CCGC	1 cut(s)	319
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	1 cut(s)	423
BspFNI	CGCG	1 cut(s)	321
BspLI	GGNNCC	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	343
BsrFI	RCCGGY	1 cut(s)	120
BssAI	RCCGGY	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	1 cut(s)	322
Bst4CI	ACNGT	3 cut(s)	166, 181, 355
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstDEI	CTNAG	2 cut(s)	410, 423
BstF5I	GGATG	5 cut(s)	65, 91, 136, 193, 283
BstFNI	CGCG	1 cut(s)	321
BstHHI	GCGC	2 cut(s)	298, 435
BstKTI	GATC	1 cut(s)	325
BstMBI	GATC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	347
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	229
BtsCI	GGATG	5 cut(s)	65, 91, 136, 193, 283
CfoI	GCGC	2 cut(s)	298, 435
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	118
CspAI	ACCGGT	1 cut(s)	120
CviAII	CATG	1 cut(s)	340
CviJI	RGCY	7 cut(s)	47, 83, 192, 212, 229, 282, 422
CviKI_1	RGCY	7 cut(s)	47, 83, 192, 212, 229, 282, 422
DdeI	CTNAG	2 cut(s)	410, 423
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
DraI	TTTAAA	1 cut(s)	52
Eco147I	AGGCCT	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	118
FaeI	CATG	1 cut(s)	343
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	1 cut(s)	339
FauNDI	CATATG	1 cut(s)	327
Fnu4HI	GCNGC	2 cut(s)	213, 319
FokI	GGATG	5 cut(s)	72, 78, 143, 180, 290
Fsp4HI	GCNGC	2 cut(s)	213, 319
FspI	TGCGCA	2 cut(s)	297, 434
GlaI	GCGC	2 cut(s)	297, 434
GluI	GCNGC	2 cut(s)	213, 319
HaeIII	GGCC	1 cut(s)	229
HapII	CCGG	2 cut(s)	121, 349
HhaI	GCGC	2 cut(s)	298, 435
Hin1II	CATG	1 cut(s)	343
Hin6I	GCGC	2 cut(s)	296, 433
HinP1I	GCGC	2 cut(s)	296, 433
HindIII	AAGCTT	1 cut(s)	45
HpaII	CCGG	2 cut(s)	121, 349
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	413
Hpy188III	TCNNGA	2 cut(s)	95, 206
HpyAV	CCTTC	2 cut(s)	121, 268
HpyCH4III	ACNGT	3 cut(s)	166, 181, 355
HpyCH4V	TGCA	3 cut(s)	215, 224, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	2 cut(s)	410, 423
Hsp92II	CATG	1 cut(s)	343
HspAI	GCGC	2 cut(s)	296, 433
Kzo9I	GATC	1 cut(s)	322
LpnPI	CCDG	7 cut(s)	108, 129, 134, 210, 243, 362, 372
Lsp1109I	GCAGC	1 cut(s)	199
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MfeI	CAATTG	1 cut(s)	216
MluCI	AATT	5 cut(s)	20, 216, 269, 306, 401
MnlI	CCTC	3 cut(s)	34, 202, 342
MseI	TTAA	2 cut(s)	51, 174
MspI	CCGG	2 cut(s)	121, 349
MspR9I	CCNGG	1 cut(s)	349
MunI	CAATTG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	298
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	221
NciI	CCSGG	1 cut(s)	349
NdeI	CATATG	1 cut(s)	327
NdeII	GATC	1 cut(s)	322
NlaIII	CATG	1 cut(s)	343
NlaIV	GGNNCC	1 cut(s)	345
NsbI	TGCGCA	2 cut(s)	297, 434
PceI	AGGCCT	1 cut(s)	229
PctI	GAATGC	1 cut(s)	298
PinAI	ACCGGT	1 cut(s)	120
PkrI	GCNGC	2 cut(s)	214, 320
PspN4I	GGNNCC	1 cut(s)	345
PspPI	GGNCC	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	51, 174
SatI	GCNGC	2 cut(s)	213, 319
Sau3AI	GATC	1 cut(s)	322
Sau96I	GGNCC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	349
SetI	ASST	5 cut(s)	49, 58, 85, 424, 429
SinI	GGWCC	1 cut(s)	118
SmlI	CTYRAG	2 cut(s)	28, 206
SmoI	CTYRAG	2 cut(s)	28, 206
Sse9I	AATT	5 cut(s)	20, 216, 269, 306, 401
SseBI	AGGCCT	1 cut(s)	229
SsiI	CCGC	1 cut(s)	319
StuI	AGGCCT	1 cut(s)	229
StyD4I	CCNGG	1 cut(s)	347
TaaI	ACNGT	3 cut(s)	166, 181, 355
TaqI	TCGA	2 cut(s)	108, 363
TasI	AATT	5 cut(s)	20, 216, 269, 306, 401
TauI	GCSGC	1 cut(s)	321
Tru1I	TTAA	2 cut(s)	51, 174
Tru9I	TTAA	2 cut(s)	51, 174
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.