Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004947.1

Orthogroup ID

OG0014557

Physical Location & Seq

Genomic Coordinates Forward (+)

150977 .. 153767

Gene Structure 2791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004947.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

atggggtatagatcttatgctgaatttaccgtgaaacctaacatgtcttcatcaccaaaagttgtgatgtcttttttgcaagagttgagcaagatggttaggccgagtgctgatgaggagtttaataaaattaaggccttcaagagagaaaaatgtggtcagacagatggagacttagaaccttgggatgaggcatactacacagcaatgatgaagtcttctgcctgtgactttgactcttcagttgtagcatcatacttttctctaccacaatgtatcgacggtttaaaagtgctggtggaatccttgtttggtgcaacgtttcataacgtgcccatggcaccaggtgaatcatggcatccagatgtgctcaaaatgtctctccatcatcctgaagagggtgatttagggtatctctaccttgatttgtactcaaggaacgacaaatatccggggtgtgctcattttgcaattaaaggtggctgcagtgtttcagaaacagaatatcaacttcctgttgttgcccttgtttgcaatttttcttcttcacataattcatcaaccgtgaggctaaatcattgggaattggaaactctgtttcatgagtttgggcatgctcttcattcgttgctttccagaacggactatcaacacttttcaggtaccagagtggttcttgatttagcagaaacaccatccaacctttttgagtactacgcttgggattatcgagttttgaagacatttgccaaacattattcaaccggggaaatcatcccagagaaattagtagattcaatgcagggtgcaagaaagatgtttgctgccacagatttgcaacgtcaggttttttatgccgctgttgatcaaacattgtttggggagcaaccaaccccaccaacaagttctattgttgaggatctgaaaagagagtatactagttggaagcatgtggagggcacaaactggcaggcccgattcaatcaccttctgaattacggtgcaggttattatagttacttgtatgccaaatgttttgctgctacgatatggcagaagctgtgtcaggaagatccactctcgttaaccacaggaaccactttaagaaccaaattcttacagcatggcggtgccaaagaaccagatgatttgttaaatggtcttgtaggagatgggattctaagggactgtaatggaggattagttcctgatattacctgtctttgtaatgaaatgaagtttgcgaagagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004177 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008238 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016787 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

417

Amino Acids

47.09

Weight (kDa)

5.6

Isoelectric Point (pI)

40.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51540
fragaria_vesca	FvH4_7g27930 FvH4_7g27930
malus_domestica	MD07G1256400.v1.1
prunus_persica	Prupe.2G280500_v2.0.a1
pyrus_communis	pycom07g22930
rosa_chinensis	RchiOBHm_Chr1g0374891
rosa_laevigata	RLG00000026709
rosa_multiflora	Rmu_sc0003145.1_g000006 Rmu_sc0004947.1_g000033
rosa_roxburghii	Rroxscaffold_4G00283200
rosa_rugosa	Rorug01G0385600
rosa_samantha	Rh1AG397200 Rh1BG361000 Rh1CG374700 Rh1DG392000
rosa_wichuraiana	Rw1G035220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	995
Acc65I	GGTACC	1 cut(s)	662
AccB1I	GGYRCC	3 cut(s)	340, 662, 1130
AccI	GTMKAC	1 cut(s)	935
AciI	CCGC	2 cut(s)	858, 1128
AclI	AACGTT	1 cut(s)	320
AclWI	GGATC	2 cut(s)	927, 1067
AcsI	RAATTY	2 cut(s)	23, 1112
AcuI	CTGAAG	2 cut(s)	225, 414
AdeI	CACNNNGTG	1 cut(s)	347
AfaI	GTAC	3 cut(s)	431, 664, 713
AfiI	CCNNNNNNNGG	1 cut(s)	398
AflIII	ACRYGT	1 cut(s)	42
AgsI	TTSAA	5 cut(s)	142, 739, 762, 798, 982
AhlI	ACTAGT	1 cut(s)	938
AjnI	CCWGG	1 cut(s)	343
AjuI	GAANNNNNNNTTGG	2 cut(s)	294, 326
AloI	GAACNNNNNNTCC	2 cut(s)	1188, 1220
AluBI	AGCT	1 cut(s)	1060
AluI	AGCT	1 cut(s)	1060
Alw21I	GWGCWC	2 cut(s)	372, 463
Alw26I	GTCTC	2 cut(s)	165, 384
AlwI	GGATC	2 cut(s)	927, 1067
AlwNI	CAGNNNCTG	1 cut(s)	1060
AoxI	GGCC	3 cut(s)	101, 135, 972
ApeKI	GCWGC	3 cut(s)	483, 824, 1040
ApoI	RAATTY	2 cut(s)	23, 1112
Asp718I	GGTACC	1 cut(s)	662
AspS9I	GGNCC	1 cut(s)	973
AsuC2I	CCSGG	2 cut(s)	453, 766
AsuHPI	GGTGA	4 cut(s)	45, 359, 413, 977
BaeGI	GKGCMC	2 cut(s)	336, 962
BaeI	ACNNNNGTAYC	2 cut(s)	654, 687
BanI	GGYRCC	3 cut(s)	340, 662, 1130
BbsI	GAAGAC	3 cut(s)	39, 210, 746
Bbv12I	GWGCWC	2 cut(s)	372, 463
BbvI	GCAGC	3 cut(s)	470, 811, 1027
BccI	CCATC	5 cut(s)	88, 161, 393, 703, 1166
BciT130I	CCWGG	1 cut(s)	345
BclI	TGATCA	1 cut(s)	865
BcnI	CCSGG	2 cut(s)	453, 766
BcoDI	GTCTC	2 cut(s)	165, 384
BcuI	ACTAGT	1 cut(s)	938
BfaI	CTAG	1 cut(s)	939
BfmI	CTRYAG	1 cut(s)	484
BfuAI	ACCTGC	1 cut(s)	995
BglII	AGATCT	1 cut(s)	11
BisI	GCNGC	4 cut(s)	484, 825, 858, 1041
BlsI	GCNGC	4 cut(s)	485, 826, 859, 1042
BmcAI	AGTACT	1 cut(s)	713
Bme1390I	CCNGG	3 cut(s)	345, 453, 766
BmgT120I	GGNCC	1 cut(s)	973
BmiI	GGNNCC	4 cut(s)	342, 664, 1096, 1132
BmrFI	CCNGG	3 cut(s)	345, 453, 766
BmsI	GCATC	2 cut(s)	260, 367
BpiI	GAAGAC	3 cut(s)	39, 210, 746
BpuEI	CTTGAG	1 cut(s)	418
BpuMI	CCSGG	2 cut(s)	453, 766
BsaJI	CCNNGG	4 cut(s)	182, 336, 452, 765
BsaXI	ACNNNNNCTCC	2 cut(s)	1188, 1218
Bsc4I	CCNNNNNNNGG	1 cut(s)	398
Bse1I	ACTGG	1 cut(s)	971
Bse3DI	GCAATG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	4 cut(s)	182, 336, 452, 765
BseGI	GGATG	5 cut(s)	193, 358, 388, 695, 774
BseLI	CCNNNNNNNGG	1 cut(s)	398
BseMI	GCAATG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	971
BseRI	GAGGAG	1 cut(s)	131
BseSI	GKGCMC	2 cut(s)	336, 962
BseXI	GCAGC	3 cut(s)	470, 811, 1027
BsgI	GTGCAG	1 cut(s)	1023
BshFI	GGCC	3 cut(s)	103, 137, 974
BshNI	GGYRCC	3 cut(s)	340, 662, 1130
BsiHKAI	GWGCWC	2 cut(s)	372, 463
BsiSI	CCGG	2 cut(s)	452, 765
BslFI	GGGAC	1 cut(s)	1199
BslI	CCNNNNNNNGG	1 cut(s)	398
BsmAI	GTCTC	2 cut(s)	165, 384
BsmFI	GGGAC	1 cut(s)	1199
BsnI	GGCC	3 cut(s)	103, 137, 974
Bsp1286I	GDGCHC	4 cut(s)	336, 372, 463, 962
Bsp143I	GATC	4 cut(s)	11, 865, 919, 1072
Bsp19I	CCATGG	1 cut(s)	336
BspACI	CCGC	2 cut(s)	858, 1128
BspANI	GGCC	3 cut(s)	103, 137, 974
BspHI	TCATGA	1 cut(s)	601
BspLI	GGNNCC	4 cut(s)	342, 664, 1096, 1132
BspMAI	CTGCAG	1 cut(s)	488
BspMI	ACCTGC	1 cut(s)	995
BspPI	GGATC	2 cut(s)	927, 1067
BspQI	GCTCTTC	1 cut(s)	624
BspT107I	GGYRCC	3 cut(s)	340, 662, 1130
BsrDI	GCAATG	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	971
BssECI	CCNNGG	4 cut(s)	182, 336, 452, 765
BssMI	GATC	4 cut(s)	11, 865, 919, 1072
BssNAI	GTATAC	1 cut(s)	936
BssT1I	CCWWGG	2 cut(s)	182, 336
Bst1107I	GTATAC	1 cut(s)	936
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	5 cut(s)	31, 284, 565, 1001, 1190
Bst6I	CTCTTC	4 cut(s)	244, 390, 624, 1241
BstC8I	GCNNGC	2 cut(s)	615, 972
BstDEI	CTNAG	2 cut(s)	175, 1181
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	5 cut(s)	193, 358, 388, 695, 774
BstKTI	GATC	4 cut(s)	14, 868, 922, 1075
BstMAI	GTCTC	2 cut(s)	165, 384
BstMBI	GATC	4 cut(s)	11, 865, 919, 1072
BstMWI	GCNNNNNNNGC	1 cut(s)	467
BstNI	CCWGG	1 cut(s)	345
BstNSI	RCATGY	3 cut(s)	46, 617, 953
BstSCI	CCNGG	3 cut(s)	343, 451, 764
BstSFI	CTRYAG	1 cut(s)	484
BstSLI	GKGCMC	2 cut(s)	336, 962
BstV1I	GCAGC	3 cut(s)	470, 811, 1027
BstV2I	GAAGAC	3 cut(s)	39, 210, 746
BstX2I	RGATCY	3 cut(s)	11, 919, 1072
BstYI	RGATCY	3 cut(s)	11, 919, 1072
BstZ17I	GTATAC	1 cut(s)	936
BsuRI	GGCC	3 cut(s)	103, 137, 974
BtgI	CCRYGG	1 cut(s)	336
BtsCI	GGATG	5 cut(s)	193, 358, 388, 695, 774
BtsI	GCAGTG	1 cut(s)	493
BtsIMutI	CAGTG	1 cut(s)	493
BveI	ACCTGC	1 cut(s)	995
Cac8I	GCNNGC	2 cut(s)	615, 972
CaiI	CAGNNNCTG	1 cut(s)	1060
CciI	TCATGA	1 cut(s)	601
Cfr13I	GGNCC	1 cut(s)	973
CsiI	ACCWGGT	1 cut(s)	343
Csp6I	GTAC	3 cut(s)	430, 663, 712
CviAII	CATG	7 cut(s)	43, 337, 354, 602, 614, 950, 1124
CviJI	RGCY	6 cut(s)	103, 137, 483, 571, 974, 1060
CviKI_1	RGCY	6 cut(s)	103, 137, 483, 571, 974, 1060
CviQI	GTAC	3 cut(s)	430, 663, 712
DdeI	CTNAG	2 cut(s)	175, 1181
DpnI	GATC	4 cut(s)	13, 867, 921, 1074
DpnII	GATC	4 cut(s)	11, 865, 919, 1072
DraI	TTTAAA	1 cut(s)	288
DraIII	CACNNNGTG	1 cut(s)	347
Eam1104I	CTCTTC	4 cut(s)	244, 390, 624, 1241
EarI	CTCTTC	4 cut(s)	244, 390, 624, 1241
Eco130I	CCWWGG	2 cut(s)	182, 336
Eco147I	AGGCCT	1 cut(s)	137
Eco57I	CTGAAG	2 cut(s)	225, 414
EcoRII	CCWGG	1 cut(s)	343
EcoT14I	CCWWGG	2 cut(s)	182, 336
ErhI	CCWWGG	2 cut(s)	182, 336
FaeI	CATG	7 cut(s)	46, 340, 357, 605, 617, 953, 1127
FaqI	GGGAC	1 cut(s)	1199
FatI	CATG	7 cut(s)	42, 336, 353, 601, 613, 949, 1123
FbaI	TGATCA	1 cut(s)	865
FblI	GTMKAC	1 cut(s)	935
Fnu4HI	GCNGC	4 cut(s)	484, 825, 858, 1041
FokI	GGATG	5 cut(s)	200, 345, 375, 682, 761
Fsp4HI	GCNGC	4 cut(s)	484, 825, 858, 1041
FspBI	CTAG	1 cut(s)	939
GluI	GCNGC	4 cut(s)	484, 825, 858, 1041
HaeIII	GGCC	3 cut(s)	103, 137, 974
HapII	CCGG	2 cut(s)	452, 765
Hin1II	CATG	7 cut(s)	46, 340, 357, 605, 617, 953, 1127
HincII	GTYRAC	1 cut(s)	1086
HindII	GTYRAC	1 cut(s)	1086
HinfI	GANTC	6 cut(s)	236, 302, 350, 794, 978, 1177
HpaI	GTTAAC	1 cut(s)	1086
HpaII	CCGG	2 cut(s)	452, 765
HphI	GGTGA	4 cut(s)	45, 359, 413, 977
Hpy166II	GTNNAC	2 cut(s)	936, 1086
Hpy188I	TCNGA	4 cut(s)	162, 496, 924, 993
Hpy188III	TCNNGA	8 cut(s)	142, 362, 392, 602, 636, 677, 1067, 1208
Hpy8I	GTNNAC	2 cut(s)	936, 1086
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	2 cut(s)	148, 998
HpyCH4III	ACNGT	5 cut(s)	31, 284, 565, 1001, 1190
HpyCH4IV	ACGT	3 cut(s)	320, 330, 841
HpyCH4V	TGCA	9 cut(s)	79, 317, 470, 486, 534, 802, 809, 838, 1004
HpyF10VI	GCNNNNNNNGC	1 cut(s)	467
HpyF3I	CTNAG	2 cut(s)	175, 1181
HpySE526I	ACGT	3 cut(s)	320, 330, 841
Hsp92II	CATG	7 cut(s)	46, 340, 357, 605, 617, 953, 1127
KpnI	GGTACC	1 cut(s)	666
Ksp22I	TGATCA	1 cut(s)	865
KspAI	GTTAAC	1 cut(s)	1086
Kzo9I	GATC	4 cut(s)	11, 865, 919, 1072
LguI	GCTCTTC	1 cut(s)	624
LmnI	GCTCC	1 cut(s)	883
Lsp1109I	GCAGC	3 cut(s)	470, 811, 1027
LweI	GCATC	2 cut(s)	260, 367
MabI	ACCWGGT	1 cut(s)	343
MaeI	CTAG	1 cut(s)	939
MaeII	ACGT	3 cut(s)	320, 330, 841
MaeIII	GTNAC	2 cut(s)	227, 1016
MalI	GATC	4 cut(s)	13, 867, 921, 1074
MboI	GATC	4 cut(s)	11, 865, 919, 1072
MboII	GAAGA	9 cut(s)	39, 210, 231, 407, 534, 537, 611, 751, 1082
MflI	RGATCY	3 cut(s)	11, 919, 1072
MhlI	GDGCHC	4 cut(s)	336, 372, 463, 962
MluCI	AATT	9 cut(s)	23, 129, 471, 535, 553, 584, 785, 994, 1112
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	2 cut(s)	723, 923
MnlI	CCTC	7 cut(s)	109, 184, 391, 561, 910, 949, 1190
MseI	TTAA	7 cut(s)	123, 132, 287, 474, 1085, 1103, 1154
MslI	CAYNNNNRTG	3 cut(s)	206, 363, 1128
MspA1I	CMGCKG	1 cut(s)	860
MspI	CCGG	2 cut(s)	452, 765
MspR9I	CCNGG	3 cut(s)	345, 453, 766
MvaI	CCWGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	1 cut(s)	467
NciI	CCSGG	2 cut(s)	453, 766
NcoI	CCATGG	1 cut(s)	336
NdeII	GATC	4 cut(s)	11, 865, 919, 1072
NlaIII	CATG	7 cut(s)	46, 340, 357, 605, 617, 953, 1127
NlaIV	GGNNCC	4 cut(s)	342, 664, 1096, 1132
NmeAIII	GCCGAG	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	227
NspI	RCATGY	3 cut(s)	46, 617, 953
PaeI	GCATGC	1 cut(s)	617
PagI	TCATGA	1 cut(s)	601
PceI	AGGCCT	1 cut(s)	137
PciI	ACATGT	1 cut(s)	42
PciSI	GCTCTTC	1 cut(s)	624
PfeI	GAWTC	5 cut(s)	302, 350, 794, 978, 1177
PkrI	GCNGC	4 cut(s)	485, 826, 859, 1042
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
PscI	ACATGT	1 cut(s)	42
Psp1406I	AACGTT	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	4 cut(s)	342, 664, 1096, 1132
PspPI	GGNCC	1 cut(s)	973
PstI	CTGCAG	1 cut(s)	488
PstNI	CAGNNNCTG	1 cut(s)	1060
PsuI	RGATCY	3 cut(s)	11, 919, 1072
RsaI	GTAC	3 cut(s)	431, 664, 713
RsaNI	GTAC	3 cut(s)	430, 663, 712
RseI	CAYNNNNRTG	3 cut(s)	206, 363, 1128
SapI	GCTCTTC	1 cut(s)	624
SaqAI	TTAA	7 cut(s)	123, 132, 287, 474, 1085, 1103, 1154
SatI	GCNGC	4 cut(s)	484, 825, 858, 1041
Sau3AI	GATC	4 cut(s)	11, 865, 919, 1072
Sau96I	GGNCC	1 cut(s)	973
ScaI	AGTACT	1 cut(s)	713
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	3 cut(s)	345, 453, 766
SduI	GDGCHC	4 cut(s)	336, 372, 463, 962
SexAI	ACCWGGT	1 cut(s)	343
SfaNI	GCATC	2 cut(s)	260, 367
SfcI	CTRYAG	1 cut(s)	484
SmiMI	CAYNNNNRTG	3 cut(s)	206, 363, 1128
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
SpeI	ACTAGT	1 cut(s)	938
SphI	GCATGC	1 cut(s)	617
Sse9I	AATT	9 cut(s)	23, 129, 471, 535, 553, 584, 785, 994, 1112
SseBI	AGGCCT	1 cut(s)	137
SsiI	CCGC	2 cut(s)	858, 1128
SspMI	CTAG	1 cut(s)	939
StuI	AGGCCT	1 cut(s)	137
StyD4I	CCNGG	3 cut(s)	343, 451, 764
StyI	CCWWGG	2 cut(s)	182, 336
TaaI	ACNGT	5 cut(s)	31, 284, 565, 1001, 1190
TaiI	ACGT	3 cut(s)	323, 333, 844
TaqI	TCGA	2 cut(s)	279, 730
TasI	AATT	9 cut(s)	23, 129, 471, 535, 553, 584, 785, 994, 1112
TatI	WGTACW	2 cut(s)	429, 711
TauI	GCSGC	1 cut(s)	860
TfiI	GAWTC	5 cut(s)	302, 350, 794, 978, 1177
Tru1I	TTAA	7 cut(s)	123, 132, 287, 474, 1085, 1103, 1154
Tru9I	TTAA	7 cut(s)	123, 132, 287, 474, 1085, 1103, 1154
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	3 cut(s)	483, 824, 1040
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	8 cut(s)	39, 227, 314, 546, 590, 611, 1245, 1250
TspGWI	ACGGA	1 cut(s)	656
TspRI	CASTG	1 cut(s)	493
XapI	RAATTY	2 cut(s)	23, 1112
XceI	RCATGY	3 cut(s)	46, 617, 953
XcmI	CCANNNNNNNNNTGG	1 cut(s)	351
XmiI	GTMKAC	1 cut(s)	935
XspI	CTAG	1 cut(s)	939
ZrmI	AGTACT	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.