Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0014557

Physical Location & Seq

Genomic Coordinates Forward (+)

49712198 .. 49714668

Gene Structure 2471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0385600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCAAACTCTGTACCCACCTTCATATATGGCTGATACTAATTGGTTTGTCCAAGAGAGCCAGAGCTCAGATTGGACTAGAGAAGAGAACAAGCAATTTGAGAGTGCTCTGGCTATCTACGATGAGAAAACGCCGGACCGGTGGGGAAAGATTGCGATGATGATTCCGGGGAAGACGGCTGTCGATGTGTTCAAGCAGTACAAGGAGCTGGAAGATGATGTTAGTGACATAGAAGCAGGGCTGGTCGAAATTCCAGGCTACCAACAGCCGTCTTCTTTCACATTGGAGTTGGTGGATGACCGAAATTTCGATGCTAACCGAAAGAGGTCTGCAGCAACTAGAGGTTCTGATCAGGAGAGGAAGAAGGGGATTCCTTGGACAGAAGATGAGCATCTGCGGTTTCTGAAGGGACTTCTAAAATATGGGAAAGGGGATTGGAGAAATATCTCCAGGAACTTTGTTATTTCTAAAACTCCAACTCAAGTTGCTAGCCATGCTCAGAAATACTTTATGAGGCAACACTCAGGAGGAAAAGATAAAAGGAGACCTAGCATCCATGATATAACAACTGTCAACCTCACGAGCACTACCACTACTAGTCCATCACAGAATAATAATAGGCCTCCTTTAGACCAGTCTCCACCACCAGAGCACAATAGCAAGTCCACTGAATCACCAAGAGTCGTACTCGACTGGAATATGCCTAATGATGGATTACCAGGAGCTATGATCTTTGACGCAACACATGGCGATCTTTTTGAGTCATCGTCTCCATTTGATGTTGGATCTCCAGACGATCTTAAGCGACATTGGCAAAAAATTTACGCCAGTGCCACTCATTATGCTGCTCATGCTACATCCCCGAGTTCGATGTATCTAATGCAGACCTCAAGACATCAGATACATGGATGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004177 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008238 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016787 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

305

Amino Acids

34.71

Weight (kDa)

6.42

Isoelectric Point (pI)

58.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	24 - 67	8.8e-06	Myb-like DNA-binding domain
Myb_DNA-binding_2	PF23082	24 - 71	1.7e-07	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	125 - 170	4.4e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51540
fragaria_vesca	FvH4_7g27930 FvH4_7g27930
malus_domestica	MD07G1256400.v1.1
prunus_persica	Prupe.2G280500_v2.0.a1
pyrus_communis	pycom07g22930
rosa_chinensis	RchiOBHm_Chr1g0374891
rosa_laevigata	RLG00000026709
rosa_multiflora	Rmu_sc0003145.1_g000006 Rmu_sc0004947.1_g000033
rosa_roxburghii	Rroxscaffold_4G00283200
rosa_rugosa	Rorug01G0385600
rosa_samantha	Rh1AG397200 Rh1BG361000 Rh1CG374700 Rh1DG392000
rosa_wichuraiana	Rw1G035220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	397, 913
AclWI	GGATC	1 cut(s)	793
AcsI	RAATTY	3 cut(s)	249, 304, 819
AcuI	CTGAAG	1 cut(s)	425
AfaI	GTAC	3 cut(s)	14, 200, 687
AfiI	CCNNNNNNNGG	1 cut(s)	710
AflII	CTTAAG	1 cut(s)	800
AgeI	ACCGGT	1 cut(s)	138
AgsI	TTSAA	1 cut(s)	193
AhlI	ACTAGT	1 cut(s)	596
AjnI	CCWGG	3 cut(s)	253, 449, 718
AluBI	AGCT	3 cut(s)	66, 208, 725
AluI	AGCT	3 cut(s)	66, 208, 725
Alw21I	GWGCWC	4 cut(s)	68, 109, 587, 654
Alw26I	GTCTC	3 cut(s)	538, 642, 774
AlwI	GGATC	1 cut(s)	793
Ama87I	CYCGRG	1 cut(s)	862
AoxI	GGCC	1 cut(s)	620
ApeKI	GCWGC	2 cut(s)	332, 845
ApoI	RAATTY	3 cut(s)	249, 304, 819
ArsI	GACNNNNNNTTYG	2 cut(s)	290, 322
AsiGI	ACCGGT	1 cut(s)	138
AspS9I	GGNCC	1 cut(s)	136
AsuC2I	CCSGG	1 cut(s)	168
AsuHPI	GGTGA	1 cut(s)	666
AsuNHI	GCTAGC	1 cut(s)	488
AvaI	CYCGRG	1 cut(s)	862
AvaII	GGWCC	1 cut(s)	136
BanII	GRGCYC	1 cut(s)	68
BauI	CACGAG	1 cut(s)	580
BbsI	GAAGAC	2 cut(s)	179, 264
Bbv12I	GWGCWC	4 cut(s)	68, 109, 587, 654
BbvI	GCAGC	2 cut(s)	344, 832
BccI	CCATC	2 cut(s)	610, 704
BceAI	ACGGC	2 cut(s)	192, 253
BciT130I	CCWGG	3 cut(s)	255, 451, 720
BclI	TGATCA	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	168
BcoDI	GTCTC	3 cut(s)	538, 642, 774
BcuI	ACTAGT	1 cut(s)	596
BfaI	CTAG	5 cut(s)	78, 339, 489, 549, 597
BfmI	CTRYAG	1 cut(s)	330
BfrI	CTTAAG	1 cut(s)	800
BisI	GCNGC	3 cut(s)	333, 846, 913
BlsI	GCNGC	3 cut(s)	334, 847, 914
Bme1390I	CCNGG	4 cut(s)	168, 255, 451, 720
Bme18I	GGWCC	1 cut(s)	136
BmeT110I	CYCGRG	1 cut(s)	862
BmgT120I	GGNCC	1 cut(s)	136
BmrFI	CCNGG	4 cut(s)	168, 255, 451, 720
BmsI	GCATC	4 cut(s)	301, 400, 561, 899
BmtI	GCTAGC	1 cut(s)	492
BoxI	GACNNNNGTC	1 cut(s)	179
BpiI	GAAGAC	2 cut(s)	179, 264
BplI	GAGNNNNNCTC	2 cut(s)	672, 704
BpmI	CTGGAG	2 cut(s)	433, 774
BpuEI	CTTGAG	2 cut(s)	465, 874
BpuMI	CCSGG	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	390
BsaI	GGTCTC	1 cut(s)	538
BsaJI	CCNNGG	2 cut(s)	167, 374
BsaWI	WCCGGW	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	710
Bse118I	RCCGGY	1 cut(s)	138
Bse1I	ACTGG	3 cut(s)	634, 698, 828
Bse8I	GATNNNNATC	1 cut(s)	390
BseBI	CCWGG	3 cut(s)	255, 451, 720
BseDI	CCNNGG	2 cut(s)	167, 374
BseGI	GGATG	4 cut(s)	301, 552, 857, 914
BseJI	GATNNNNATC	1 cut(s)	390
BseLI	CCNNNNNNNGG	1 cut(s)	710
BseMII	CTCAG	3 cut(s)	81, 512, 537
BseNI	ACTGG	3 cut(s)	634, 698, 828
BseXI	GCAGC	2 cut(s)	344, 832
BshFI	GGCC	1 cut(s)	622
BshTI	ACCGGT	1 cut(s)	138
BsiHKAI	GWGCWC	4 cut(s)	68, 109, 587, 654
BsiHKCI	CYCGRG	1 cut(s)	862
BsiSI	CCGG	3 cut(s)	134, 139, 167
BslFI	GGGAC	1 cut(s)	423
BslI	CCNNNNNNNGG	1 cut(s)	710
BsmAI	GTCTC	3 cut(s)	538, 642, 774
BsmBI	CGTCTC	1 cut(s)	774
BsmFI	GGGAC	1 cut(s)	423
BsnI	GGCC	1 cut(s)	622
Bso31I	GGTCTC	1 cut(s)	538
BsoBI	CYCGRG	1 cut(s)	862
Bsp1286I	GDGCHC	4 cut(s)	68, 109, 587, 654
Bsp143I	GATC	5 cut(s)	349, 729, 751, 785, 796
BspACI	CCGC	2 cut(s)	397, 913
BspANI	GGCC	1 cut(s)	622
BspCNI	CTCAG	3 cut(s)	80, 511, 536
BspMAI	CTGCAG	1 cut(s)	334
BspOI	GCTAGC	1 cut(s)	492
BspPI	GGATC	1 cut(s)	793
BspTI	CTTAAG	1 cut(s)	800
BspTNI	GGTCTC	1 cut(s)	538
BsrFI	RCCGGY	1 cut(s)	138
BsrI	ACTGG	3 cut(s)	634, 698, 828
BssAI	RCCGGY	1 cut(s)	138
BssECI	CCNNGG	2 cut(s)	167, 374
BssMI	GATC	5 cut(s)	349, 729, 751, 785, 796
BssSI	CACGAG	1 cut(s)	580
BssT1I	CCWWGG	1 cut(s)	374
Bst2BI	CACGAG	1 cut(s)	580
Bst2UI	CCWGG	3 cut(s)	255, 451, 720
Bst4CI	ACNGT	1 cut(s)	571
Bst6I	CTCTTC	1 cut(s)	78
BstAFI	CTTAAG	1 cut(s)	800
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	3 cut(s)	67, 498, 523
BstF5I	GGATG	4 cut(s)	301, 552, 857, 914
BstKTI	GATC	5 cut(s)	352, 732, 754, 788, 799
BstMAI	GTCTC	3 cut(s)	538, 642, 774
BstMBI	GATC	5 cut(s)	349, 729, 751, 785, 796
BstMWI	GCNNNNNNNGC	3 cut(s)	494, 811, 851
BstNI	CCWGG	3 cut(s)	255, 451, 720
BstPAI	GACNNNNGTC	1 cut(s)	179
BstSCI	CCNGG	4 cut(s)	166, 253, 449, 718
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	2 cut(s)	344, 832
BstV2I	GAAGAC	2 cut(s)	179, 264
BstX2I	RGATCY	1 cut(s)	785
BstYI	RGATCY	1 cut(s)	785
BsuRI	GGCC	1 cut(s)	622
BtgZI	GCGATG	1 cut(s)	170
BtsCI	GGATG	4 cut(s)	301, 552, 857, 914
BtsIMutI	CAGTG	2 cut(s)	666, 835
Cac8I	GCNNGC	1 cut(s)	490
Cfr10I	RCCGGY	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	136
CpoI	CGGWCCG	1 cut(s)	136
CseI	GACGC	1 cut(s)	746
Csp6I	GTAC	3 cut(s)	13, 199, 686
CspAI	ACCGGT	1 cut(s)	138
CspI	CGGWCCG	1 cut(s)	136
CviAII	CATG	5 cut(s)	494, 557, 746, 851, 905
CviQI	GTAC	3 cut(s)	13, 199, 686
DdeI	CTNAG	3 cut(s)	67, 498, 523
DpnI	GATC	5 cut(s)	351, 731, 753, 787, 798
DpnII	GATC	5 cut(s)	349, 729, 751, 785, 796
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Ecl136II	GAGCTC	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	374
Eco147I	AGGCCT	1 cut(s)	622
Eco24I	GRGCYC	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	136
Eco53kI	GAGCTC	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	425
Eco88I	CYCGRG	1 cut(s)	862
EcoICRI	GAGCTC	1 cut(s)	66
EcoRII	CCWGG	3 cut(s)	253, 449, 718
EcoT14I	CCWWGG	1 cut(s)	374
EcoT38I	GRGCYC	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	374
Esp3I	CGTCTC	1 cut(s)	774
FaeI	CATG	5 cut(s)	497, 560, 749, 854, 908
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	5 cut(s)	493, 556, 745, 850, 904
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	3 cut(s)	333, 846, 913
FokI	GGATG	3 cut(s)	308, 539, 844
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	3 cut(s)	333, 846, 913
FspBI	CTAG	5 cut(s)	78, 339, 489, 549, 597
GluI	GCNGC	3 cut(s)	333, 846, 913
GsuI	CTGGAG	2 cut(s)	433, 774
HaeIII	GGCC	1 cut(s)	622
HapII	CCGG	3 cut(s)	134, 139, 167
HgaI	GACGC	1 cut(s)	746
Hin1II	CATG	5 cut(s)	497, 560, 749, 854, 908
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HinfI	GANTC	5 cut(s)	163, 370, 671, 681, 761
HpaII	CCGG	3 cut(s)	134, 139, 167
HphI	GGTGA	1 cut(s)	666
Hpy166II	GTNNAC	2 cut(s)	574, 666
Hpy188I	TCNGA	5 cut(s)	70, 349, 405, 501, 900
Hpy188III	TCNNGA	5 cut(s)	353, 525, 580, 791, 891
Hpy8I	GTNNAC	2 cut(s)	574, 666
HpyAV	CCTTC	3 cut(s)	30, 358, 400
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4V	TGCA	3 cut(s)	4, 332, 883
HpyF10VI	GCNNNNNNNGC	3 cut(s)	494, 811, 851
HpyF3I	CTNAG	3 cut(s)	67, 498, 523
Hsp92II	CATG	5 cut(s)	497, 560, 749, 854, 908
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	5 cut(s)	349, 729, 751, 785, 796
LmnI	GCTCC	2 cut(s)	205, 722
Lsp1109I	GCAGC	2 cut(s)	344, 832
LweI	GCATC	4 cut(s)	301, 400, 561, 899
MaeI	CTAG	5 cut(s)	78, 339, 489, 549, 597
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	5 cut(s)	351, 731, 753, 787, 798
MboI	GATC	5 cut(s)	349, 729, 751, 785, 796
MboII	GAAGA	6 cut(s)	95, 184, 224, 264, 373, 395
MflI	RGATCY	1 cut(s)	785
MhlI	GDGCHC	4 cut(s)	68, 109, 587, 654
MluCI	AATT	5 cut(s)	40, 95, 249, 304, 819
MlyI	GAGTC	2 cut(s)	690, 770
MmeI	TCCRAC	2 cut(s)	500, 763
MnlI	CCTC	8 cut(s)	318, 335, 351, 507, 521, 587, 633, 898
MseI	TTAA	1 cut(s)	801
MspA1I	CMGCKG	1 cut(s)	915
MspCI	CTTAAG	1 cut(s)	800
MspI	CCGG	3 cut(s)	134, 139, 167
MspR9I	CCNGG	4 cut(s)	168, 255, 451, 720
MvaI	CCWGG	3 cut(s)	255, 451, 720
MwoI	GCNNNNNNNGC	3 cut(s)	494, 811, 851
NciI	CCSGG	1 cut(s)	168
NdeII	GATC	5 cut(s)	349, 729, 751, 785, 796
NheI	GCTAGC	1 cut(s)	488
NlaIII	CATG	5 cut(s)	497, 560, 749, 854, 908
NmuCI	GTSAC	1 cut(s)	224
PceI	AGGCCT	1 cut(s)	622
PfeI	GAWTC	3 cut(s)	163, 370, 671
PfoI	TCCNGGA	1 cut(s)	449
PinAI	ACCGGT	1 cut(s)	138
PkrI	GCNGC	3 cut(s)	334, 847, 914
PleI	GAGTC	2 cut(s)	689, 769
PpsI	GAGTC	2 cut(s)	689, 769
PshAI	GACNNNNGTC	1 cut(s)	179
Psp124BI	GAGCTC	1 cut(s)	68
Psp6I	CCWGG	3 cut(s)	253, 449, 718
PspGI	CCWGG	3 cut(s)	253, 449, 718
PspPI	GGNCC	1 cut(s)	136
PstI	CTGCAG	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	785
RsaI	GTAC	3 cut(s)	14, 200, 687
RsaNI	GTAC	3 cut(s)	13, 199, 686
Rsr2I	CGGWCCG	1 cut(s)	136
RsrII	CGGWCCG	1 cut(s)	136
SacI	GAGCTC	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	801
SatI	GCNGC	3 cut(s)	333, 846, 913
Sau3AI	GATC	5 cut(s)	349, 729, 751, 785, 796
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	2 cut(s)	690, 770
ScrFI	CCNGG	4 cut(s)	168, 255, 451, 720
SduI	GDGCHC	4 cut(s)	68, 109, 587, 654
SetI	ASST	9 cut(s)	22, 68, 210, 329, 346, 550, 579, 727, 890
SfaNI	GCATC	4 cut(s)	301, 400, 561, 899
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	1 cut(s)	136
SmlI	CTYRAG	3 cut(s)	480, 800, 889
SmoI	CTYRAG	3 cut(s)	480, 800, 889
SpeI	ACTAGT	1 cut(s)	596
Sse9I	AATT	5 cut(s)	40, 95, 249, 304, 819
SseBI	AGGCCT	1 cut(s)	622
SsiI	CCGC	2 cut(s)	397, 913
SspMI	CTAG	5 cut(s)	78, 339, 489, 549, 597
SstI	GAGCTC	1 cut(s)	68
StuI	AGGCCT	1 cut(s)	622
StyD4I	CCNGG	4 cut(s)	166, 253, 449, 718
StyI	CCWWGG	1 cut(s)	374
TaaI	ACNGT	1 cut(s)	571
TaqI	TCGA	5 cut(s)	183, 246, 309, 690, 869
TaqII	GACCGA	1 cut(s)	315
TasI	AATT	5 cut(s)	40, 95, 249, 304, 819
TatI	WGTACW	1 cut(s)	198
TauI	GCSGC	1 cut(s)	915
TfiI	GAWTC	3 cut(s)	163, 370, 671
Tru1I	TTAA	1 cut(s)	801
Tru9I	TTAA	1 cut(s)	801
TscAI	CASTG	2 cut(s)	673, 835
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	2 cut(s)	332, 845
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	1 cut(s)	12
TspRI	CASTG	2 cut(s)	673, 835
Vha464I	CTTAAG	1 cut(s)	800
VpaK11BI	GGWCC	1 cut(s)	136
XapI	RAATTY	3 cut(s)	249, 304, 819
XspI	CTAG	5 cut(s)	78, 339, 489, 549, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.