Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004989.1

Orthogroup ID

OG0017445

Physical Location & Seq

Genomic Coordinates Reverse (-)

12110 .. 18877

Gene Structure 6768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004989.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3135 bp

atgtctaatctcagtgaagatcttgtgttcttggtcttaaagtatttggatgaagaaggttataaggaagccgcccacatgcttgagcgtgaaagtgggctttactttgacatgaattactttgaagagctggtgcttagtggaaaatgggatgaagcagagaaatacctcgccggcttcacaaagctcgatgacaataagtactcaactaagatctactttgaaatcaggaagcaacattactttgaggcacttgacaaaaaatgtcgtgccgaggctttagatgtcctcacaaatgatctacaagtttttgctaaaggtaatgaagagctgttcaaagaaatgactcaacttatgacatttgagaacataagggaacatgagtcactgtctatgtatagagatacaaagtctgctaggaaggttatgatgaaagaaatcaggagggtaattgaggcaaatccaattttccgtggtagactggaatttcctatcgtaaaaggcgagagattacggcgtctgattaaccaaagcttgaattggcagcatatgcaatgtgaagatcctcatccaaatccagccattgacaccctttttattgatcatgtttgtgacccacagccttcccggaccacatcatatcaatctccaacttgttctgtgaagtcaagtctatctaccattgcacaatatgcatcgtgtattggaggatctttccctgcaaagaacccagctactgaggttattgaggattctgatgttttatccaaaaggatgcccattgtaactggggatgaggtaacatcaactatcactgatcatggccaaaatcagatttcggaacttgccatatccaaaaatcttcccagtactgttgtcagtacattgaatgagcggtcttctccagtgagcatggattttcatcccgtttggcttactgttcttctagttggaacttctgctggggaaataggactgtgggatattagctgcggtggaaaaatggttgccagaaactttaatgtttgggatcttggagcatgctcaatggccttaaaggtagcactagaaaaagattcacatgtctctgttaatcgtgtgttatggagtccggatggtttcttatttggggttgcatattcaaaacatgttgtgcaattgtattcttatattggaggagatgaactggatcaaatattggaaattgatgctcatttgggtggtgtaaatgatttagcattctcttctcctgaaggggaacttttggtcataacatgtggtgatgacaggaccatcaaggtgtgggatgtggttagtggtaaccgatgctttacttttgaaggtcatgatgctcctgtttattccatctgtcctcatatcaaagacaatatcccttttatcttttcagtctcaacagttggcaggatcaaagtgtggttatatgacaatttaggagacagaattgattatgatgctcctggtcttggttgcaccaaaatggcttacagtgctgatgagaggcttttttcatgtgggaccagtaaaggaggggaatcatatcttgttgaatggaatgatactgttggttgtttcaaaagagtttacaaaggacttgggccaaacccattgtctgccgtgcaattcgatataaccagtaaccagcttttggctgctggtgatgaccatatggttaaattttggcatatggacaacactcaacttttgaataccattgatgctgatggtggattgccagcaaatccacatattcgcttcaacagtgatggcaccctattagctgtttcttcaagtggaaaccaaatcaagatactggcaaatgctaatggtcttgatttgctgcaaggatgtgggaatgattctatcgatgcctctggagttgaatctgaaacttcaagaaagaatgggaatgtggcagaagtgaattcaaaaacaacaggagaagccacttacggagaaaaggcatgggaaactattgagagaccttctcaatgccaatctttgcagctatgtgctgatgtcaaaagaaccaagatatccaagctgatctacaccaatgctggtgacgccattttggcattaacatcaaatgccattcatctactctggaaatggccgcagaacgatcttagttctagtggaaaggcaactaccaaggttcaacctcttttatggcgaccaacgagtggcttacaggagttacagcagatgagcaatgacctttccagcaccaaccctgaagaggccatgccatgctttgctttgtccaagaatgattcatatcttatgtcagcatcaggagggatgatctccctttttaatgttatatcgtttaagacaatgaggaaagtcatggctccaccacctgcagcaacatgccttgcttttgatcctcgagacaacaatgtagttgctattggcatggatgattccacaattatgatatataatgctcacttggataaggtcacaaaaacgcttgctggtcacaccaaaagagtcacttcgcttgccttctctacctctatgaaatcacttgtttcttctggtgctgatgctcagatttttgtgtggaatgatgagtggaaaatacagagaagccaagtgctgcagattccagattggaacaaattgagagcattatcagactcagatacccatgtccagtttcacgaggatcagctgcattttctaatcgtacacaagactcaccttgcaatatacgaagtgaaagaactaggatgtgtaaacaagtgggtctcagattcttctgtaccaatttcccatgcaacgttctcatgtgatagccagaccgtatatgccagctttgtggatggaaccataggcatatttgacgcttctgttcttgtactattctgtctaatcaagccctccgcttaccttcctaccgatataagttatactgtgtacccagtcgtcattgctgggcatccacaaaaaccaacccagtttgccgttggactctctaatggtgaagttcatgtgcttgagcctttagaatcggaaggcaaatggggtatattgcccacggttaaaaggaatttgaagagcagtgcacctgcaaaatctacctttcggggcttcttgtatgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

1044

Amino Acids

115.76

Weight (kDa)

5.38

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017445)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0297391
rosa_laevigata	RLG00000011603
rosa_multiflora	Rmu_sc0004989.1_g000003
rosa_roxburghii	Rroxscaffold_7G00170560
rosa_rugosa	Rorug06G0271300 Rorug06G0271400 Rorug06G0271500 Rorug06G0271600
rosa_samantha	Rh6AG382800 Rh6BG391100 Rh6CG396000 Rh6DG383300
rosa_wichuraiana	Rw6G033340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	63
AarI	CACCTGC	2 cut(s)	2392, 3106
Acc36I	ACCTGC	2 cut(s)	2392, 3106
AccB1I	GGYRCC	1 cut(s)	1787
AccB7I	CCANNNNNTGG	2 cut(s)	1666, 2204
AccBSI	CCGCTC	1 cut(s)	895
AccI	GTMKAC	1 cut(s)	478
AccIII	TCCGGA	1 cut(s)	1111
AciI	CCGC	5 cut(s)	72, 895, 993, 2135, 2913
AclI	AACGTT	1 cut(s)	2810
AclWI	GGATC	7 cut(s)	557, 718, 1038, 1197, 1433, 2402, 2703
AcoI	YGGCCR	2 cut(s)	823, 2132
AcsI	RAATTY	4 cut(s)	485, 1694, 1942, 3079
AcuI	CTGAAG	2 cut(s)	1272, 2277
AcyI	GRCGYC	2 cut(s)	517, 2085
AfaI	GTAC	7 cut(s)	203, 871, 883, 2718, 2793, 2889, 2948
AfiI	CCNNNNNNNGG	4 cut(s)	1484, 1666, 2204, 2260
AflIII	ACRYGT	3 cut(s)	1081, 1147, 1274
AjnI	CCWGG	1 cut(s)	1477
Alw21I	GWGCWC	1 cut(s)	3097
Alw26I	GTCTC	6 cut(s)	1090, 1414, 1449, 1993, 2409, 2782
Alw44I	GTGCAC	1 cut(s)	3093
AlwI	GGATC	7 cut(s)	557, 718, 1038, 1197, 1433, 2402, 2703
AlwNI	CAGNNNCTG	1 cut(s)	737
Ama87I	CYCGRG	1 cut(s)	2412
Aor13HI	TCCGGA	1 cut(s)	1111
AoxI	GGCC	5 cut(s)	823, 1050, 1616, 2132, 2262
ApaLI	GTGCAC	1 cut(s)	3093
ApeKI	GCWGC	8 cut(s)	544, 990, 1670, 1858, 2023, 2387, 2626, 2701
ApoI	RAATTY	4 cut(s)	485, 1694, 1942, 3079
ArsI	GACNNNNNNTTYG	2 cut(s)	1613, 1645
AspS9I	GGNCC	4 cut(s)	630, 1290, 1536, 1616
AsuC2I	CCSGG	1 cut(s)	628
AsuHPI	GGTGA	5 cut(s)	1292, 1688, 2093, 2720, 3023
AvaI	CYCGRG	1 cut(s)	2412
AvaII	GGWCC	3 cut(s)	630, 1290, 1536
BaeGI	GKGCMC	1 cut(s)	3097
BaeI	ACNNNNGTAYC	2 cut(s)	2664, 2697
BalI	TGGCCA	1 cut(s)	825
BanI	GGYRCC	1 cut(s)	1787
BarI	GAAGNNNNNNTAC	2 cut(s)	224, 256
BauI	CACGAG	1 cut(s)	2690
BbsI	GAAGAC	1 cut(s)	891
Bbv12I	GWGCWC	1 cut(s)	3097
BbvI	GCAGC	8 cut(s)	556, 977, 1657, 1845, 2035, 2399, 2613, 2688
BccI	CCATC	6 cut(s)	1109, 1301, 1373, 1736, 1778, 2846
BceAI	ACGGC	3 cut(s)	530, 1619, 2978
BciT130I	CCWGG	1 cut(s)	1479
BclI	TGATCA	2 cut(s)	601, 817
BcnI	CCSGG	1 cut(s)	628
BcoDI	GTCTC	6 cut(s)	1090, 1414, 1449, 1993, 2409, 2782
BfaI	CTAG	5 cut(s)	417, 947, 1067, 2154, 2756
BfmI	CTRYAG	2 cut(s)	2385, 2627
BfuAI	ACCTGC	2 cut(s)	2392, 3106
BglI	GCCNNNNNGGC	1 cut(s)	2093
BglII	AGATCT	2 cut(s)	19, 213
BmcAI	AGTACT	2 cut(s)	203, 871
Bme1390I	CCNGG	2 cut(s)	628, 1479
Bme18I	GGWCC	3 cut(s)	630, 1290, 1536
BmeT110I	CYCGRG	1 cut(s)	2412
BmgT120I	GGNCC	4 cut(s)	630, 1290, 1536, 1616
BmiI	GGNNCC	4 cut(s)	1537, 1789, 2376, 2857
BmrFI	CCNGG	2 cut(s)	628, 1479
BmrI	ACTGGG	4 cut(s)	798, 861, 2945, 2980
BmuI	ACTGGG	4 cut(s)	798, 861, 2945, 2980
BpiI	GAAGAC	1 cut(s)	891
BplI	GAGNNNNNCTC	2 cut(s)	1990, 2022
BpmI	CTGGAG	2 cut(s)	888, 1914
BpuEI	CTTGAG	2 cut(s)	104, 3047
BpuMI	CCSGG	1 cut(s)	628
Bsa29I	ATCGAT	1 cut(s)	1884
BsaBI	GATNNNNATC	3 cut(s)	567, 921, 2298
BsaHI	GRCGYC	2 cut(s)	517, 2085
BsaI	GGTCTC	2 cut(s)	1993, 2782
BsaJI	CCNNGG	4 cut(s)	273, 472, 2172, 3066
BsaWI	WCCGGW	1 cut(s)	1111
Bsc4I	CCNNNNNNNGG	4 cut(s)	1484, 1666, 2204, 2260
Bse118I	RCCGGY	1 cut(s)	173
Bse3DI	GCAATG	4 cut(s)	560, 681, 2239, 2958
Bse8I	GATNNNNATC	3 cut(s)	567, 921, 2298
BseAI	TCCGGA	1 cut(s)	1111
BseBI	CCWGG	1 cut(s)	1479
BseCI	ATCGAT	1 cut(s)	1884
BseDI	CCNNGG	4 cut(s)	273, 472, 2172, 3066
BseJI	GATNNNNATC	3 cut(s)	567, 921, 2298
BseLI	CCNNNNNNNGG	4 cut(s)	1484, 1666, 2204, 2260
BseMI	GCAATG	4 cut(s)	560, 681, 2239, 2958
BseMII	CTCAG	5 cut(s)	25, 729, 2591, 2682, 2793
BseRI	GAGGAG	1 cut(s)	1191
BseSI	GKGCMC	1 cut(s)	3097
BseXI	GCAGC	8 cut(s)	556, 977, 1657, 1845, 2035, 2399, 2613, 2688
BseYI	CCCAGC	3 cut(s)	730, 962, 2963
BshFI	GGCC	5 cut(s)	825, 1052, 1618, 2134, 2264
BshNI	GGYRCC	1 cut(s)	1787
BshVI	ATCGAT	1 cut(s)	1884
BsiHKAI	GWGCWC	1 cut(s)	3097
BsiHKCI	CYCGRG	1 cut(s)	2412
BsiSI	CCGG	3 cut(s)	174, 628, 1112
BslFI	GGGAC	1 cut(s)	1549
BslI	CCNNNNNNNGG	4 cut(s)	1484, 1666, 2204, 2260
BsmAI	GTCTC	6 cut(s)	1090, 1414, 1449, 1993, 2409, 2782
BsmFI	GGGAC	1 cut(s)	1549
BsmI	GAATGC	1 cut(s)	1238
BsnI	GGCC	5 cut(s)	825, 1052, 1618, 2134, 2264
Bso31I	GGTCTC	2 cut(s)	1993, 2782
BsoBI	CYCGRG	1 cut(s)	2412
Bsp1286I	GDGCHC	1 cut(s)	3097
Bsp13I	TCCGGA	1 cut(s)	1111
BspACI	CCGC	5 cut(s)	72, 895, 993, 2135, 2913
BspANI	GGCC	5 cut(s)	825, 1052, 1618, 2134, 2264
BspCNI	CTCAG	5 cut(s)	24, 730, 2590, 2681, 2792
BspDI	ATCGAT	1 cut(s)	1884
BspEI	TCCGGA	1 cut(s)	1111
BspHI	TCATGA	1 cut(s)	1345
BspLI	GGNNCC	4 cut(s)	1537, 1789, 2376, 2857
BspMAI	CTGCAG	2 cut(s)	2389, 2631
BspMI	ACCTGC	2 cut(s)	2392, 3106
BspPI	GGATC	7 cut(s)	557, 718, 1038, 1197, 1433, 2402, 2703
BspQI	GCTCTTC	3 cut(s)	120, 321, 3080
BspT107I	GGYRCC	1 cut(s)	1787
BspTNI	GGTCTC	2 cut(s)	1993, 2782
BsrBI	CCGCTC	1 cut(s)	895
BsrDI	GCAATG	4 cut(s)	560, 681, 2239, 2958
BsrFI	RCCGGY	1 cut(s)	173
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	4 cut(s)	273, 472, 2172, 3066
BssNI	GRCGYC	2 cut(s)	517, 2085
BssSI	CACGAG	1 cut(s)	2690
BssT1I	CCWWGG	1 cut(s)	2172
Bst2BI	CACGAG	1 cut(s)	2690
Bst2UI	CCWGG	1 cut(s)	1479
Bst6I	CTCTTC	5 cut(s)	120, 321, 1249, 2253, 3080
BstACI	GRCGYC	2 cut(s)	517, 2085
BstAPI	GCANNNNNTGC	2 cut(s)	550, 692
BstC8I	GCNNGC	6 cut(s)	175, 1042, 1755, 2499, 2529, 2842
BstDEI	CTNAG	8 cut(s)	11, 137, 210, 738, 2147, 2577, 2668, 2779
BstDSI	CCRYGG	2 cut(s)	472, 3066
BstEII	GGTNACC	1 cut(s)	1319
BstMAI	GTCTC	6 cut(s)	1090, 1414, 1449, 1993, 2409, 2782
BstMWI	GCNNNNNNNGC	5 cut(s)	550, 692, 1508, 2084, 2093
BstNI	CCWGG	1 cut(s)	1479
BstNSI	RCATGY	6 cut(s)	82, 1044, 1085, 1151, 1278, 2397
BstPI	GGTNACC	1 cut(s)	1319
BstSCI	CCNGG	2 cut(s)	626, 1477
BstSFI	CTRYAG	2 cut(s)	2385, 2627
BstSLI	GKGCMC	1 cut(s)	3097
BstV1I	GCAGC	8 cut(s)	556, 977, 1657, 1845, 2035, 2399, 2613, 2688
BstV2I	GAAGAC	1 cut(s)	891
BstX2I	RGATCY	5 cut(s)	19, 213, 562, 710, 1030
BstXI	CCANNNNNNTGG	1 cut(s)	2848
BstYI	RGATCY	5 cut(s)	19, 213, 562, 710, 1030
Bsu15I	ATCGAT	1 cut(s)	1884
BsuRI	GGCC	5 cut(s)	825, 1052, 1618, 2134, 2264
BsuTUI	ATCGAT	1 cut(s)	1884
BtgI	CCRYGG	2 cut(s)	472, 3066
BtsI	GCAGTG	1 cut(s)	3097
BtsIMutI	CAGTG	7 cut(s)	19, 386, 813, 912, 1513, 1786, 3097
BveI	ACCTGC	2 cut(s)	2392, 3106
Cac8I	GCNNGC	6 cut(s)	175, 1042, 1755, 2499, 2529, 2842
CaiI	CAGNNNCTG	1 cut(s)	737
CciI	TCATGA	1 cut(s)	1345
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	4 cut(s)	630, 1290, 1536, 1616
ClaI	ATCGAT	1 cut(s)	1884
CseI	GACGC	3 cut(s)	506, 2093, 2882
Csp6I	GTAC	7 cut(s)	202, 870, 882, 2717, 2792, 2888, 2947
CviQI	GTAC	7 cut(s)	202, 870, 882, 2717, 2792, 2888, 2947
DdeI	CTNAG	8 cut(s)	11, 137, 210, 738, 2147, 2577, 2668, 2779
EaeI	YGGCCR	2 cut(s)	823, 2132
Eam1104I	CTCTTC	5 cut(s)	120, 321, 1249, 2253, 3080
EarI	CTCTTC	5 cut(s)	120, 321, 1249, 2253, 3080
Eco130I	CCWWGG	1 cut(s)	2172
Eco31I	GGTCTC	2 cut(s)	1993, 2782
Eco32I	GATATC	1 cut(s)	2055
Eco47I	GGWCC	3 cut(s)	630, 1290, 1536
Eco57I	CTGAAG	2 cut(s)	1272, 2277
Eco88I	CYCGRG	1 cut(s)	2412
Eco91I	GGTNACC	1 cut(s)	1319
EcoO65I	GGTNACC	1 cut(s)	1319
EcoRI	GAATTC	1 cut(s)	1942
EcoRII	CCWGG	1 cut(s)	1477
EcoRV	GATATC	1 cut(s)	2055
EcoT14I	CCWWGG	1 cut(s)	2172
EcoT22I	ATGCAT	1 cut(s)	697
ErhI	CCWWGG	1 cut(s)	2172
FalI	AAGNNNNNCTT	6 cut(s)	203, 235, 1245, 1277, 2506, 2538
FaqI	GGGAC	1 cut(s)	1549
FauNDI	CATATG	3 cut(s)	549, 1686, 1704
FbaI	TGATCA	2 cut(s)	601, 817
FblI	GTMKAC	1 cut(s)	478
FspBI	CTAG	5 cut(s)	417, 947, 1067, 2154, 2756
GsaI	CCCAGC	3 cut(s)	734, 966, 2967
GsuI	CTGGAG	2 cut(s)	888, 1914
HaeIII	GGCC	5 cut(s)	825, 1052, 1618, 2134, 2264
HapII	CCGG	3 cut(s)	174, 628, 1112
HgaI	GACGC	3 cut(s)	506, 2093, 2882
Hin1I	GRCGYC	2 cut(s)	517, 2085
HindIII	AAGCTT	1 cut(s)	532
HpaII	CCGG	3 cut(s)	174, 628, 1112
HphI	GGTGA	5 cut(s)	1292, 1688, 2093, 2720, 3023
Hpy166II	GTNNAC	6 cut(s)	479, 1603, 2719, 2767, 2947, 3095
Hpy8I	GTNNAC	6 cut(s)	479, 1603, 2719, 2767, 2947, 3095
HpyAV	CCTTC	9 cut(s)	50, 415, 633, 1247, 1334, 2013, 2542, 2930, 3038
HpyCH4IV	ACGT	1 cut(s)	2810
HpyF10VI	GCNNNNNNNGC	5 cut(s)	550, 692, 1508, 2084, 2093
HpyF3I	CTNAG	8 cut(s)	11, 137, 210, 738, 2147, 2577, 2668, 2779
HpySE526I	ACGT	1 cut(s)	2810
Hsp92I	GRCGYC	2 cut(s)	517, 2085
Kpn2I	TCCGGA	1 cut(s)	1111
KroI	GCCGGC	1 cut(s)	173
KroNI	GCCGGC	1 cut(s)	175
Ksp22I	TGATCA	2 cut(s)	601, 817
LguI	GCTCTTC	3 cut(s)	120, 321, 3080
LmnI	GCTCC	4 cut(s)	1037, 1357, 1480, 2380
Lsp1109I	GCAGC	8 cut(s)	556, 977, 1657, 1845, 2035, 2399, 2613, 2688
MaeI	CTAG	5 cut(s)	417, 947, 1067, 2154, 2756
MaeII	ACGT	1 cut(s)	2810
MbiI	CCGCTC	1 cut(s)	895
MfeI	CAATTG	1 cut(s)	1157
MflI	RGATCY	5 cut(s)	19, 213, 562, 710, 1030
MhlI	GDGCHC	1 cut(s)	3097
MlsI	TGGCCA	1 cut(s)	825
MluNI	TGGCCA	1 cut(s)	825
MlyI	GAGTC	7 cut(s)	340, 392, 1117, 2526, 2660, 2719, 2994
MmeI	TCCRAC	3 cut(s)	674, 931, 2977
Mox20I	TGGCCA	1 cut(s)	825
Mph1103I	ATGCAT	1 cut(s)	697
MroI	TCCGGA	1 cut(s)	1111
MroNI	GCCGGC	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	825
MslI	CAYNNNNRTG	5 cut(s)	609, 1218, 1298, 1496, 2456
Msp20I	TGGCCA	1 cut(s)	825
MspA1I	CMGCKG	1 cut(s)	2701
MspI	CCGG	3 cut(s)	174, 628, 1112
MspR9I	CCNGG	2 cut(s)	628, 1479
MunI	CAATTG	1 cut(s)	1157
Mva1269I	GAATGC	1 cut(s)	1238
MvaI	CCWGG	1 cut(s)	1479
MwoI	GCNNNNNNNGC	5 cut(s)	550, 692, 1508, 2084, 2093
NaeI	GCCGGC	1 cut(s)	175
NciI	CCSGG	1 cut(s)	628
NdeI	CATATG	3 cut(s)	549, 1686, 1704
NgoMIV	GCCGGC	1 cut(s)	173
NlaIV	GGNNCC	4 cut(s)	1537, 1789, 2376, 2857
NmeAIII	GCCGAG	1 cut(s)	298
NmuCI	GTSAC	6 cut(s)	384, 611, 2081, 2485, 2504, 2518
NsiI	ATGCAT	1 cut(s)	697
NspI	RCATGY	6 cut(s)	82, 1044, 1085, 1151, 1278, 2397
PaeI	GCATGC	1 cut(s)	1044
PaeR7I	CTCGAG	1 cut(s)	2412
PagI	TCATGA	1 cut(s)	1345
PaqCI	CACCTGC	2 cut(s)	2392, 3106
PciI	ACATGT	3 cut(s)	1081, 1147, 1274
PciSI	GCTCTTC	3 cut(s)	120, 321, 3080
PcsI	WCGNNNNNNNCGW	1 cut(s)	501
PctI	GAATGC	1 cut(s)	1238
PdiI	GCCGGC	1 cut(s)	175
PflMI	CCANNNNNTGG	2 cut(s)	1666, 2204
PfoI	TCCNGGA	1 cut(s)	626
PleI	GAGTC	7 cut(s)	340, 391, 1116, 2525, 2660, 2719, 2994
PpsI	GAGTC	7 cut(s)	340, 391, 1116, 2525, 2660, 2719, 2994
PscI	ACATGT	3 cut(s)	1081, 1147, 1274
PsiI	TTATAA	1 cut(s)	63
Psp1406I	AACGTT	1 cut(s)	2810
Psp6I	CCWGG	1 cut(s)	1477
PspEI	GGTNACC	1 cut(s)	1319
PspFI	CCCAGC	3 cut(s)	730, 962, 2963
PspGI	CCWGG	1 cut(s)	1477
PspN4I	GGNNCC	4 cut(s)	1537, 1789, 2376, 2857
PspPI	GGNCC	4 cut(s)	630, 1290, 1536, 1616
PstI	CTGCAG	2 cut(s)	2389, 2631
PstNI	CAGNNNCTG	1 cut(s)	737
PsuI	RGATCY	5 cut(s)	19, 213, 562, 710, 1030
PvuII	CAGCTG	1 cut(s)	2701
RsaI	GTAC	7 cut(s)	203, 871, 883, 2718, 2793, 2889, 2948
RsaNI	GTAC	7 cut(s)	202, 870, 882, 2717, 2792, 2888, 2947
RseI	CAYNNNNRTG	5 cut(s)	609, 1218, 1298, 1496, 2456
SapI	GCTCTTC	3 cut(s)	120, 321, 3080
Sau96I	GGNCC	4 cut(s)	630, 1290, 1536, 1616
ScaI	AGTACT	2 cut(s)	203, 871
SchI	GAGTC	7 cut(s)	340, 392, 1117, 2526, 2660, 2719, 2994
ScrFI	CCNGG	2 cut(s)	628, 1479
SduI	GDGCHC	1 cut(s)	3097
SfcI	CTRYAG	2 cut(s)	2385, 2627
Sfr274I	CTCGAG	1 cut(s)	2412
SinI	GGWCC	3 cut(s)	630, 1290, 1536
SlaI	CTCGAG	1 cut(s)	2412
SmiMI	CAYNNNNRTG	5 cut(s)	609, 1218, 1298, 1496, 2456
SmlI	CTYRAG	3 cut(s)	83, 2412, 3026
SmoI	CTYRAG	3 cut(s)	83, 2412, 3026
SphI	GCATGC	1 cut(s)	1044
SsiI	CCGC	5 cut(s)	72, 895, 993, 2135, 2913
SspI	AATATT	1 cut(s)	1197
SspMI	CTAG	5 cut(s)	417, 947, 1067, 2154, 2756
StyD4I	CCNGG	2 cut(s)	626, 1477
StyI	CCWWGG	1 cut(s)	2172
TaiI	ACGT	1 cut(s)	2813
TaqI	TCGA	4 cut(s)	189, 1644, 1884, 2413
TatI	WGTACW	4 cut(s)	201, 869, 881, 2887
TauI	GCSGC	2 cut(s)	74, 2137
TscAI	CASTG	7 cut(s)	19, 393, 820, 912, 1513, 1786, 3097
TseFI	GTSAC	6 cut(s)	384, 611, 2081, 2485, 2504, 2518
TseI	GCWGC	8 cut(s)	544, 990, 1670, 1858, 2023, 2387, 2626, 2701
Tsp45I	GTSAC	6 cut(s)	384, 611, 2081, 2485, 2504, 2518
TspGWI	ACGGA	2 cut(s)	461, 1986
TspRI	CASTG	7 cut(s)	19, 393, 820, 912, 1513, 1786, 3097
Van91I	CCANNNNNTGG	2 cut(s)	1666, 2204
VneI	GTGCAC	1 cut(s)	3093
VpaK11BI	GGWCC	3 cut(s)	630, 1290, 1536
XapI	RAATTY	4 cut(s)	485, 1694, 1942, 3079
XceI	RCATGY	6 cut(s)	82, 1044, 1085, 1151, 1278, 2397
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2993
XhoI	CTCGAG	1 cut(s)	2412
XmiI	GTMKAC	1 cut(s)	478
XspI	CTAG	5 cut(s)	417, 947, 1067, 2154, 2756
ZrmI	AGTACT	2 cut(s)	203, 871
Zsp2I	ATGCAT	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.