Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0017445

Physical Location & Seq

Genomic Coordinates Reverse (-)

41904252 .. 41904867

Gene Structure 616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0271500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGTGGCGTTGAACCATGGAGTCGCAGCTAATAGGAAATTTCTTGACCACCCTGGAGTTGTTGACCCTTGCCAAAGACCCGGTGGACCGCACCCGGGTTGTCTTCCTAGTAACAACAATGATGGGTTGGTGGAGGTGAAGGTGACATCGCCTCCCAAAGTGTATAAGAAGAAAGGTCGGCCTAGGGGACAGCGCAACAAGATTAAGCAGGTGGTGTCTGTGAGCAGAGGCTCTTCCATGGCCTCAATCGAGGAGGGTTCTGGCAGTATGCCTAGGGGAGAGGCAGCTTTGCCTGTTTCCCAGTCCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

103

Amino Acids

10.87

Weight (kDa)

9.93

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017445)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0297391
rosa_laevigata	RLG00000011603
rosa_multiflora	Rmu_sc0004989.1_g000003
rosa_roxburghii	Rroxscaffold_7G00170560
rosa_rugosa	Rorug06G0271300 Rorug06G0271400 Rorug06G0271500 Rorug06G0271600
rosa_samantha	Rh6AG382800 Rh6BG391100 Rh6CG396000 Rh6DG383300
rosa_wichuraiana	Rw6G033340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	199
Acc36I	ACCTGC	1 cut(s)	199
AciI	CCGC	1 cut(s)	89
AcsI	RAATTY	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	52
AluBI	AGCT	2 cut(s)	29, 287
AluI	AGCT	2 cut(s)	29, 287
Ama87I	CYCGRG	1 cut(s)	94
AoxI	GGCC	2 cut(s)	179, 240
ApeKI	GCWGC	2 cut(s)	26, 284
ApoI	RAATTY	1 cut(s)	38
AspA2I	CCTAGG	2 cut(s)	182, 272
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	1 cut(s)	86
AsuC2I	CCSGG	3 cut(s)	81, 95, 96
AsuHPI	GGTGA	2 cut(s)	148, 154
AvaI	CYCGRG	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	86
AvrII	CCTAGG	2 cut(s)	182, 272
BbsI	GAAGAC	1 cut(s)	95
BbvI	GCAGC	2 cut(s)	38, 296
BccI	CCATC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	54
BcnI	CCSGG	3 cut(s)	81, 95, 96
BfaI	CTAG	3 cut(s)	108, 183, 273
BfuAI	ACCTGC	1 cut(s)	199
BisI	GCNGC	2 cut(s)	27, 285
BlnI	CCTAGG	2 cut(s)	182, 272
BlsI	GCNGC	2 cut(s)	28, 286
Bme1390I	CCNGG	4 cut(s)	54, 81, 95, 96
Bme18I	GGWCC	1 cut(s)	86
BmeT110I	CYCGRG	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	86
BmrFI	CCNGG	4 cut(s)	54, 81, 95, 96
BmrI	ACTGGG	1 cut(s)	295
BmuI	ACTGGG	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	95
BpmI	CTGGAG	1 cut(s)	75
BpuMI	CCSGG	3 cut(s)	81, 95, 96
BsaJI	CCNNGG	6 cut(s)	16, 52, 94, 182, 237, 272
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	301
BseBI	CCWGG	1 cut(s)	54
BseDI	CCNNGG	6 cut(s)	16, 52, 94, 182, 237, 272
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	2 cut(s)	38, 296
BshFI	GGCC	2 cut(s)	181, 242
BsiHKCI	CYCGRG	1 cut(s)	94
BsiSI	CCGG	2 cut(s)	81, 95
BslFI	GGGAC	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	201
BsnI	GGCC	2 cut(s)	181, 242
BsoBI	CYCGRG	1 cut(s)	94
Bsp19I	CCATGG	2 cut(s)	16, 237
BspACI	CCGC	1 cut(s)	89
BspANI	GGCC	2 cut(s)	181, 242
BspMI	ACCTGC	1 cut(s)	199
BspQI	GCTCTTC	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	6 cut(s)	16, 52, 94, 182, 237, 272
BssT1I	CCWWGG	4 cut(s)	16, 182, 237, 272
Bst2UI	CCWGG	1 cut(s)	54
Bst6I	CTCTTC	1 cut(s)	238
BstDSI	CCRYGG	2 cut(s)	16, 237
BstHHI	GCGC	1 cut(s)	195
BstNI	CCWGG	1 cut(s)	54
BstSCI	CCNGG	4 cut(s)	52, 79, 93, 94
BstV1I	GCAGC	2 cut(s)	38, 296
BstV2I	GAAGAC	1 cut(s)	95
BsuRI	GGCC	2 cut(s)	181, 242
BtgI	CCRYGG	2 cut(s)	16, 237
BtgZI	GCGATG	1 cut(s)	132
BveI	ACCTGC	1 cut(s)	199
CfoI	GCGC	1 cut(s)	195
Cfr13I	GGNCC	1 cut(s)	86
Cfr9I	CCCGGG	1 cut(s)	94
CviAII	CATG	2 cut(s)	17, 238
CviJI	RGCY	5 cut(s)	29, 181, 231, 242, 287
CviKI_1	RGCY	5 cut(s)	29, 181, 231, 242, 287
Eam1104I	CTCTTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	238
Eco130I	CCWWGG	4 cut(s)	16, 182, 237, 272
Eco47I	GGWCC	1 cut(s)	86
Eco88I	CYCGRG	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	52
EcoT14I	CCWWGG	4 cut(s)	16, 182, 237, 272
ErhI	CCWWGG	4 cut(s)	16, 182, 237, 272
FaeI	CATG	2 cut(s)	20, 241
FaiI	YATR	4 cut(s)	18, 165, 239, 269
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	2 cut(s)	16, 237
Fnu4HI	GCNGC	2 cut(s)	27, 285
Fsp4HI	GCNGC	2 cut(s)	27, 285
FspBI	CTAG	3 cut(s)	108, 183, 273
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	2 cut(s)	27, 285
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	181, 242
HapII	CCGG	2 cut(s)	81, 95
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	20, 241
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	1 cut(s)	21
HpaII	CCGG	2 cut(s)	81, 95
HphI	GGTGA	2 cut(s)	148, 154
Hpy166II	GTNNAC	2 cut(s)	64, 86
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	2 cut(s)	64, 86
HpyAV	CCTTC	1 cut(s)	133
Hsp92II	CATG	2 cut(s)	20, 241
HspAI	GCGC	1 cut(s)	193
LguI	GCTCTTC	1 cut(s)	238
LpnPI	CCDG	7 cut(s)	39, 66, 94, 108, 194, 246, 306
Lsp1109I	GCAGC	2 cut(s)	38, 296
MaeI	CTAG	3 cut(s)	108, 183, 273
MaeIII	GTNAC	2 cut(s)	110, 142
MboII	GAAGA	3 cut(s)	95, 181, 225
MluCI	AATT	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	30
MnlI	CCTC	7 cut(s)	127, 162, 221, 244, 247, 253, 274
MseI	TTAA	1 cut(s)	204
MspI	CCGG	2 cut(s)	81, 95
MspR9I	CCNGG	4 cut(s)	54, 81, 95, 96
MvaI	CCWGG	1 cut(s)	54
NciI	CCSGG	3 cut(s)	81, 95, 96
NcoI	CCATGG	2 cut(s)	16, 237
NlaIII	CATG	2 cut(s)	20, 241
NmuCI	GTSAC	1 cut(s)	142
PaqCI	CACCTGC	1 cut(s)	199
PciSI	GCTCTTC	1 cut(s)	238
PkrI	GCNGC	2 cut(s)	28, 286
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	52
PspPI	GGNCC	1 cut(s)	86
SapI	GCTCTTC	1 cut(s)	238
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	2 cut(s)	27, 285
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	1 cut(s)	30
ScrFI	CCNGG	4 cut(s)	54, 81, 95, 96
SetI	ASST	6 cut(s)	31, 138, 144, 178, 213, 289
SinI	GGWCC	1 cut(s)	86
SmaI	CCCGGG	1 cut(s)	96
Sse9I	AATT	1 cut(s)	38
SsiI	CCGC	1 cut(s)	89
SspMI	CTAG	3 cut(s)	108, 183, 273
StyD4I	CCNGG	4 cut(s)	52, 79, 93, 94
StyI	CCWWGG	4 cut(s)	16, 182, 237, 272
TaqI	TCGA	1 cut(s)	249
TasI	AATT	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	2 cut(s)	26, 284
Tsp45I	GTSAC	1 cut(s)	142
TspMI	CCCGGG	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	86
XapI	RAATTY	1 cut(s)	38
XcmI	CCANNNNNNNNNTGG	1 cut(s)	80
XmaI	CCCGGG	1 cut(s)	94
XmaJI	CCTAGG	2 cut(s)	182, 272
XspI	CTAG	3 cut(s)	108, 183, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.