Rmu_sc0005037.1_g000012

Blue-light photoreceptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005037.1
OG0014144
Physical Location & Seq
Forward (+)
44421 .. 46792
2372 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1389 bp
atggaccccaattcccaaatctcggagaacccagaatcatcagaggagcaacaacaacagcaacaaaacgcactggcccttctcctcccttcttcttctccattcgccacggcttcactctcactctccctggcctcaatcctccccacccactttttccaacaacccaaagtggccaccctcttctcctcccagcccaccaaggcgaaaatccccagccaggcctcctccctcgcccacctctccctctccgcctccgccaatgtggccaccccctccaagctctccttcaagtccaccatctccgccaaccccctccaaaaccccctcactctcggcccccgccgccccctcgaccccaacaacggggccggaattcgtcgagcttccatcgtttggttccgcaacgacctccgcgtccacgacaacgagtgcctcaactccgccaacaacgagtccatgtccgtcttgcccgtctactgcttcgacccgcgagactacggcaagtcgtcttccggcttcgacaagaccggcccattccgggcccagttcctcgtcgagtccgtctccgacctgaggaagaatctccaggccagaggctctgacctcgtcgtcagaatcgggaagcccgagacggtcctcgccgagctggccaagactattggggccgatgcaatctatgcccacagggaggtttctcatgatgaggtcaagtctgaggagaagattgagtctgcgatgaaggatgagaatgttgaggttaagtacttctggggaagcactttgtaccatatggaggacttgccgtttaagctggaggacatgcccacgaactatggtgggttcagagagaaggtgaaggggttggaggtgaggaagaccattgaggctttggagcagctcaaggggatgccgtctcgcggcgatgtggagcctggggatgttccttccttgatggatttgggtctcaacccatctgcttccatggctcaggatgggaagccaggtgctgcttctatggtgggaggagaagctgaagccctagagaggcttaagaagtttgcagctgagtgccaagcacaacctcccaaggggagcaaagaaggaagtcagaatagcatttatggtgcaaacttttcgtgcaaaatctcaccatggctggccatgggatgcctctctccccgcagtatgtttgatgagctaaagaaaactgctagcagatctgtttctgcatcctcaaacccggatgatggtggcagcggaacaaactggttaatgtttgagttactgtggagggatttcttcagatttgttaccaagaaatacagtgctggaaagaaacagcttgatgctgctccagcaacagcatgcacgggtgcacttgcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_photolyase

Protein Analysis

462

Amino Acids

50.15

Weight (kDa)

6.37

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_photolyase PF00875 130 - 288 3.9e-44 DNA photolyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014144)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47590
fragaria_vesca FvH4_2g25790
malus_domestica MD03G1288700.v1.1 MD11G1309400.v1.1
prunus_persica Prupe.8G262000_v2.0.a1 Prupe.8G262000_v2.0.a1 Prupe.8G262000_v2.0.a1
pyrus_communis pycom03g22880 pycom11g27050
rosa_chinensis RchiOBHm_Chr6g0294101
rosa_laevigata RLG00000011899
rosa_multiflora Rmu_sc0005037.1_g000012
rosa_roxburghii Rroxscaffold_7G00173650
rosa_rugosa Rorug06G0241100
rosa_samantha Rh6BG360700 Rh6DG354600
rosa_wichuraiana Rw6G030830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 416, 611
AccB7I CCANNNNNTGG 1 cut(s) 396
AccI GTMKAC 1 cut(s) 477
AccII CGCG 3 cut(s) 417, 493, 921
AcoI YGGCCR 4 cut(s) 174, 267, 651, 1161
AcsI RAATTY 1 cut(s) 375
AcuI CTGAAG 2 cut(s) 1056, 1288
AfaI GTAC 2 cut(s) 767, 788
AflII CTTAAG 1 cut(s) 1052
AgsI TTSAA 1 cut(s) 292
AjnI CCWGG 5 cut(s) 129, 219, 588, 934, 1003
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AluBI AGCT 9 cut(s) 283, 386, 649, 814, 901, 1034, 1067, 1201, 1345
AluI AGCT 9 cut(s) 283, 386, 649, 814, 901, 1034, 1067, 1201, 1345
Alw21I GWGCWC 1 cut(s) 1381
Alw26I GTCTC 5 cut(s) 489, 571, 626, 921, 971
Alw44I GTGCAC 1 cut(s) 1377
AlwNI CAGNNNCTG 1 cut(s) 1010
Ama87I CYCGRG 1 cut(s) 629
ApaI GGGCCC 1 cut(s) 547
ApaLI GTGCAC 1 cut(s) 1377
ApeKI GCWGC 5 cut(s) 898, 1010, 1064, 1257, 1352
ApoI RAATTY 1 cut(s) 375
AspS9I GGNCC 9 cut(s) 4, 76, 338, 369, 533, 543, 544, 637, 666
AsuC2I CCSGG 2 cut(s) 542, 1244
AsuHPI GGTGA 3 cut(s) 868, 883, 1143
AsuNHI GCTAGC 1 cut(s) 1214
AvaI CYCGRG 1 cut(s) 629
AvaII GGWCC 2 cut(s) 4, 637
AxyI CCTNAGG 1 cut(s) 575
BaeGI GKGCMC 2 cut(s) 547, 1381
BalI TGGCCA 4 cut(s) 176, 269, 653, 1163
BanII GRGCYC 1 cut(s) 547
BbsI GAAGAC 2 cut(s) 504, 884
Bbv12I GWGCWC 1 cut(s) 1381
BbvI GCAGC 5 cut(s) 910, 997, 1076, 1269, 1339
BccI CCATC 6 cut(s) 308, 398, 949, 982, 989, 1244
BceAI ACGGC 4 cut(s) 126, 517, 790, 898
BcgI CGANNNNNNTGC 2 cut(s) 1119, 1153
BciT130I CCWGG 5 cut(s) 131, 221, 590, 936, 1005
BcnI CCSGG 2 cut(s) 542, 1244
BcoDI GTCTC 5 cut(s) 489, 571, 626, 921, 971
BfaI CTAG 2 cut(s) 1043, 1215
BfrI CTTAAG 1 cut(s) 1052
BglI GCCNNNNNGGC 2 cut(s) 266, 650
BglII AGATCT 1 cut(s) 1220
BisI GCNGC 7 cut(s) 346, 899, 922, 1011, 1065, 1258, 1353
BlsI GCNGC 7 cut(s) 347, 900, 923, 1012, 1066, 1259, 1354
BmcAI AGTACT 1 cut(s) 767
Bme1390I CCNGG 7 cut(s) 131, 221, 542, 590, 936, 1005, 1244
Bme18I GGWCC 2 cut(s) 4, 637
BmeT110I CYCGRG 1 cut(s) 629
BmgT120I GGNCC 9 cut(s) 4, 76, 338, 369, 533, 543, 544, 637, 666
BmiI GGNNCC 7 cut(s) 6, 340, 370, 401, 545, 667, 933
BmrFI CCNGG 7 cut(s) 131, 221, 542, 590, 936, 1005, 1244
BmrI ACTGGG 1 cut(s) 541
BmsI GCATC 5 cut(s) 661, 900, 1160, 1241, 1339
BmtI GCTAGC 1 cut(s) 1218
BmuI ACTGGG 1 cut(s) 541
BpiI GAAGAC 2 cut(s) 504, 884
BplI GAGNNNNNCTC 2 cut(s) 551, 583
BpmI CTGGAG 3 cut(s) 572, 836, 1341
Bpu10I CCTNAGC 1 cut(s) 990
BpuEI CTTGAG 1 cut(s) 887
BpuMI CCSGG 2 cut(s) 542, 1244
BsaI GGTCTC 1 cut(s) 971
BsaJI CCNNGG 8 cut(s) 108, 129, 201, 935, 984, 1089, 1154, 1164
Bse118I RCCGGY 1 cut(s) 530
Bse1I ACTGG 3 cut(s) 78, 547, 1274
Bse21I CCTNAGG 1 cut(s) 575
BseBI CCWGG 5 cut(s) 131, 221, 590, 936, 1005
BseDI CCNNGG 8 cut(s) 108, 129, 201, 935, 984, 1089, 1154, 1164
BseGI GGATG 7 cut(s) 751, 915, 946, 1000, 1175, 1232, 1252
BseMII CTCAG 4 cut(s) 566, 708, 1004, 1059
BseNI ACTGG 3 cut(s) 78, 547, 1274
BseRI GAGGAG 6 cut(s) 59, 74, 178, 217, 734, 1041
BseSI GKGCMC 2 cut(s) 547, 1381
BseXI GCAGC 5 cut(s) 910, 997, 1076, 1269, 1339
BseYI CCCAGC 2 cut(s) 192, 215
Bsh1236I CGCG 3 cut(s) 417, 493, 921
BsiHKAI GWGCWC 1 cut(s) 1381
BsiHKCI CYCGRG 1 cut(s) 629
BsiSI CCGG 5 cut(s) 372, 516, 531, 541, 1244
BsmAI GTCTC 5 cut(s) 489, 571, 626, 921, 971
BsmBI CGTCTC 3 cut(s) 571, 626, 921
Bso31I GGTCTC 1 cut(s) 971
BsoBI CYCGRG 1 cut(s) 629
Bsp120I GGGCCC 1 cut(s) 543
Bsp1286I GDGCHC 2 cut(s) 547, 1381
Bsp143I GATC 1 cut(s) 1220
Bsp19I CCATGG 3 cut(s) 984, 1154, 1164
BspCNI CTCAG 4 cut(s) 567, 709, 1003, 1060
BspFNI CGCG 3 cut(s) 417, 493, 921
BspHI TCATGA 1 cut(s) 700
BspLI GGNNCC 7 cut(s) 6, 340, 370, 401, 545, 667, 933
BspOI GCTAGC 1 cut(s) 1218
BspTI CTTAAG 1 cut(s) 1052
BspTNI GGTCTC 1 cut(s) 971
BsrFI RCCGGY 1 cut(s) 530
BsrI ACTGG 3 cut(s) 78, 547, 1274
BssAI RCCGGY 1 cut(s) 530
BssECI CCNNGG 8 cut(s) 108, 129, 201, 935, 984, 1089, 1154, 1164
BssMI GATC 1 cut(s) 1220
BssT1I CCWWGG 5 cut(s) 201, 984, 1089, 1154, 1164
Bst2UI CCWGG 5 cut(s) 131, 221, 590, 936, 1005
Bst4CI ACNGT 3 cut(s) 637, 1290, 1328
Bst6I CTCTTC 1 cut(s) 188
BstAFI CTTAAG 1 cut(s) 1052
BstAPI GCANNNNNTGC 1 cut(s) 680
BstC8I GCNNGC 4 cut(s) 651, 1161, 1216, 1369
BstDEI CTNAG 4 cut(s) 575, 717, 990, 1068
BstDSI CCRYGG 4 cut(s) 108, 984, 1154, 1164
BstF5I GGATG 7 cut(s) 751, 915, 946, 1000, 1175, 1232, 1252
BstFNI CGCG 3 cut(s) 417, 493, 921
BstKTI GATC 1 cut(s) 1223
BstMAI GTCTC 5 cut(s) 489, 571, 626, 921, 971
BstMBI GATC 1 cut(s) 1220
BstMWI GCNNNNNNNGC 7 cut(s) 266, 345, 650, 680, 811, 986, 1358
BstNI CCWGG 5 cut(s) 131, 221, 590, 936, 1005
BstNSI RCATGY 2 cut(s) 826, 1371
BstSCI CCNGG 7 cut(s) 129, 219, 540, 588, 934, 1003, 1242
BstSLI GKGCMC 2 cut(s) 547, 1381
BstUI CGCG 3 cut(s) 417, 493, 921
BstV1I GCAGC 5 cut(s) 910, 997, 1076, 1269, 1339
BstV2I GAAGAC 2 cut(s) 504, 884
BstX2I RGATCY 1 cut(s) 1220
BstYI RGATCY 1 cut(s) 1220
Bsu36I CCTNAGG 1 cut(s) 575
BtgI CCRYGG 4 cut(s) 108, 984, 1154, 1164
BtgZI GCGATG 2 cut(s) 752, 939
BtsCI GGATG 7 cut(s) 751, 915, 946, 1000, 1175, 1232, 1252
BtsIMutI CAGTG 2 cut(s) 71, 1333
Cac8I GCNNGC 4 cut(s) 651, 1161, 1216, 1369
CaiI CAGNNNCTG 1 cut(s) 1010
CciI TCATGA 1 cut(s) 700
Cfr10I RCCGGY 1 cut(s) 530
Cfr13I GGNCC 9 cut(s) 4, 76, 338, 369, 533, 543, 544, 637, 666
CseI GACGC 1 cut(s) 406
Csp6I GTAC 2 cut(s) 766, 787
CviAII CATG 7 cut(s) 460, 701, 823, 985, 1155, 1165, 1368
CviQI GTAC 2 cut(s) 766, 787
DdeI CTNAG 4 cut(s) 575, 717, 990, 1068
DpnI GATC 1 cut(s) 1222
DpnII GATC 1 cut(s) 1220
DrdI GACNNNNNNGTC 2 cut(s) 416, 611
DseDI GACNNNNNNGTC 2 cut(s) 416, 611
EaeI YGGCCR 4 cut(s) 174, 267, 651, 1161
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
EciI GGCGGA 4 cut(s) 241, 247, 295, 433
Eco130I CCWWGG 5 cut(s) 201, 984, 1089, 1154, 1164
Eco147I AGGCCT 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 547
Eco31I GGTCTC 1 cut(s) 971
Eco47I GGWCC 2 cut(s) 4, 637
Eco57I CTGAAG 2 cut(s) 1056, 1288
Eco81I CCTNAGG 1 cut(s) 575
Eco88I CYCGRG 1 cut(s) 629
EcoRI GAATTC 1 cut(s) 375
EcoRII CCWGG 5 cut(s) 129, 219, 588, 934, 1003
EcoT14I CCWWGG 5 cut(s) 201, 984, 1089, 1154, 1164
EcoT38I GRGCYC 1 cut(s) 547
ErhI CCWWGG 5 cut(s) 201, 984, 1089, 1154, 1164
Esp3I CGTCTC 3 cut(s) 571, 626, 921
FaeI CATG 7 cut(s) 463, 704, 826, 988, 1158, 1168, 1371
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FatI CATG 7 cut(s) 459, 700, 822, 984, 1154, 1164, 1367
FauI CCCGC 3 cut(s) 350, 498, 1190
FauNDI CATATG 1 cut(s) 792
FblI GTMKAC 1 cut(s) 477
Fnu4HI GCNGC 7 cut(s) 346, 899, 922, 1011, 1065, 1258, 1353
FokI GGATG 7 cut(s) 758, 922, 953, 1007, 1182, 1219, 1259
FriOI GRGCYC 1 cut(s) 547
Fsp4HI GCNGC 7 cut(s) 346, 899, 922, 1011, 1065, 1258, 1353
FspBI CTAG 2 cut(s) 1043, 1215
GluI GCNGC 7 cut(s) 346, 899, 922, 1011, 1065, 1258, 1353
GsaI CCCAGC 2 cut(s) 196, 219
GsuI CTGGAG 3 cut(s) 572, 836, 1341
HapII CCGG 5 cut(s) 372, 516, 531, 541, 1244
HgaI GACGC 1 cut(s) 406
Hin1II CATG 7 cut(s) 463, 704, 826, 988, 1158, 1168, 1371
HinfI GANTC 6 cut(s) 35, 455, 560, 583, 618, 731
HpaII CCGG 5 cut(s) 372, 516, 531, 541, 1244
HphI GGTGA 3 cut(s) 868, 883, 1143
Hpy166II GTNNAC 4 cut(s) 297, 421, 478, 1379
Hpy188I TCNGA 9 cut(s) 25, 43, 571, 604, 617, 718, 848, 1113, 1307
Hpy188III TCNNGA 3 cut(s) 622, 701, 992
Hpy8I GTNNAC 4 cut(s) 297, 421, 478, 1379
Hpy99I CGWCG 3 cut(s) 384, 560, 614
HpyAV CCTTC 8 cut(s) 89, 99, 298, 736, 847, 853, 957, 1097
HpyCH4III ACNGT 3 cut(s) 637, 1290, 1328
HpyCH4V TGCA 7 cut(s) 674, 1064, 1130, 1143, 1232, 1371, 1379
HpyF10VI GCNNNNNNNGC 7 cut(s) 266, 345, 650, 680, 811, 986, 1358
HpyF3I CTNAG 4 cut(s) 575, 717, 990, 1068
Hsp92II CATG 7 cut(s) 463, 704, 826, 988, 1158, 1168, 1371
Kzo9I GATC 1 cut(s) 1220
LmnI GCTCC 5 cut(s) 46, 895, 931, 1095, 1360
Lsp1109I GCAGC 5 cut(s) 910, 997, 1076, 1269, 1339
LweI GCATC 5 cut(s) 661, 900, 1160, 1241, 1339
MaeI CTAG 2 cut(s) 1043, 1215
MaeIII GTNAC 2 cut(s) 1284, 1312
MalI GATC 1 cut(s) 1222
MboI GATC 1 cut(s) 1220
MboII GAAGA 8 cut(s) 84, 87, 175, 504, 592, 736, 889, 1294
MflI RGATCY 1 cut(s) 1220
MhlI GDGCHC 2 cut(s) 547, 1381
MlsI TGGCCA 4 cut(s) 176, 269, 653, 1163
MluCI AATT 2 cut(s) 10, 375
MluNI TGGCCA 4 cut(s) 176, 269, 653, 1163
MlyI GAGTC 3 cut(s) 464, 569, 740
MmeI TCCRAC 3 cut(s) 184, 594, 846
Mox20I TGGCCA 4 cut(s) 176, 269, 653, 1163
MscI TGGCCA 4 cut(s) 176, 269, 653, 1163
MseI TTAA 4 cut(s) 762, 810, 1053, 1274
Msp20I TGGCCA 4 cut(s) 176, 269, 653, 1163
MspA1I CMGCKG 2 cut(s) 1067, 1260
MspCI CTTAAG 1 cut(s) 1052
MspI CCGG 5 cut(s) 372, 516, 531, 541, 1244
MspR9I CCNGG 7 cut(s) 131, 221, 542, 590, 936, 1005, 1244
MvaI CCWGG 5 cut(s) 131, 221, 590, 936, 1005
MvnI CGCG 3 cut(s) 417, 493, 921
MwoI GCNNNNNNNGC 7 cut(s) 266, 345, 650, 680, 811, 986, 1358
NciI CCSGG 2 cut(s) 542, 1244
NcoI CCATGG 3 cut(s) 984, 1154, 1164
NdeI CATATG 1 cut(s) 792
NdeII GATC 1 cut(s) 1220
NheI GCTAGC 1 cut(s) 1214
NlaIII CATG 7 cut(s) 463, 704, 826, 988, 1158, 1168, 1371
NlaIV GGNNCC 7 cut(s) 6, 340, 370, 401, 545, 667, 933
NmeAIII GCCGAG 2 cut(s) 315, 670
NspI RCATGY 2 cut(s) 826, 1371
PaeI GCATGC 1 cut(s) 1371
PagI TCATGA 1 cut(s) 700
PceI AGGCCT 1 cut(s) 224
PcsI WCGNNNNNNNCGW 3 cut(s) 414, 561, 627
PfeI GAWTC 3 cut(s) 35, 583, 618
PflFI GACNNNGTC 1 cut(s) 608
PflMI CCANNNNNTGG 1 cut(s) 396
PkrI GCNGC 7 cut(s) 347, 900, 923, 1012, 1066, 1259, 1354
PleI GAGTC 3 cut(s) 463, 568, 739
PpsI GAGTC 3 cut(s) 463, 568, 739
Psp6I CCWGG 5 cut(s) 129, 219, 588, 934, 1003
PspFI CCCAGC 2 cut(s) 192, 215
PspGI CCWGG 5 cut(s) 129, 219, 588, 934, 1003
PspN4I GGNNCC 7 cut(s) 6, 340, 370, 401, 545, 667, 933
PspOMI GGGCCC 1 cut(s) 543
PspPI GGNCC 9 cut(s) 4, 76, 338, 369, 533, 543, 544, 637, 666
PstNI CAGNNNCTG 1 cut(s) 1010
PsuI RGATCY 1 cut(s) 1220
PsyI GACNNNGTC 1 cut(s) 608
PvuII CAGCTG 1 cut(s) 1067
RsaI GTAC 2 cut(s) 767, 788
RsaNI GTAC 2 cut(s) 766, 787
SaqAI TTAA 4 cut(s) 762, 810, 1053, 1274
SatI GCNGC 7 cut(s) 346, 899, 922, 1011, 1065, 1258, 1353
Sau3AI GATC 1 cut(s) 1220
Sau96I GGNCC 9 cut(s) 4, 76, 338, 369, 533, 543, 544, 637, 666
ScaI AGTACT 1 cut(s) 767
SchI GAGTC 3 cut(s) 464, 569, 740
ScrFI CCNGG 7 cut(s) 131, 221, 542, 590, 936, 1005, 1244
SduI GDGCHC 2 cut(s) 547, 1381
SfaNI GCATC 5 cut(s) 661, 900, 1160, 1241, 1339
SinI GGWCC 2 cut(s) 4, 637
SmlI CTYRAG 2 cut(s) 902, 1052
SmoI CTYRAG 2 cut(s) 902, 1052
SphI GCATGC 1 cut(s) 1371
Sse9I AATT 2 cut(s) 10, 375
SseBI AGGCCT 1 cut(s) 224
SspMI CTAG 2 cut(s) 1043, 1215
StuI AGGCCT 1 cut(s) 224
StyD4I CCNGG 7 cut(s) 129, 219, 540, 588, 934, 1003, 1242
StyI CCWWGG 5 cut(s) 201, 984, 1089, 1154, 1164
TaaI ACNGT 3 cut(s) 637, 1290, 1328
TaqI TCGA 5 cut(s) 354, 382, 486, 522, 558
TasI AATT 2 cut(s) 10, 375
TatI WGTACW 1 cut(s) 765
TauI GCSGC 2 cut(s) 348, 924
TfiI GAWTC 3 cut(s) 35, 583, 618
Tru1I TTAA 4 cut(s) 762, 810, 1053, 1274
Tru9I TTAA 4 cut(s) 762, 810, 1053, 1274
TscAI CASTG 2 cut(s) 78, 1333
TseI GCWGC 5 cut(s) 898, 1010, 1064, 1257, 1352
TspDTI ATGAA 1 cut(s) 755
TspGWI ACGGA 2 cut(s) 454, 553
TspRI CASTG 2 cut(s) 78, 1333
Tth111I GACNNNGTC 1 cut(s) 608
Van91I CCANNNNNTGG 1 cut(s) 396
Vha464I CTTAAG 1 cut(s) 1052
VneI GTGCAC 1 cut(s) 1377
VpaK11BI GGWCC 2 cut(s) 4, 637
XapI RAATTY 1 cut(s) 375
XceI RCATGY 2 cut(s) 826, 1371
XcmI CCANNNNNNNNNTGG 1 cut(s) 889
XmiI GTMKAC 1 cut(s) 477
XspI CTAG 2 cut(s) 1043, 1215
ZrmI AGTACT 1 cut(s) 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.