Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005055.1

Orthogroup ID

OG0011160

Physical Location & Seq

Genomic Coordinates Reverse (-)

71654 .. 89758

Gene Structure 18105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005055.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3564 bp

atgggtgccaggaatgaagaagaggagttcaatacaggaccactctcgattctcatgatgagtgtcaagaatcatacacatgtcctcatcaattgccgcaacaacagaaagctttttggcactgcaacatggttctggaaaatgtcaaggagatgtggactgaggttccaaggaccggaaaaggaaagaagaaagcccaagcggagaaatgataaaaatcatactatgatcgggaatggaaaacccattttagagcaacttgaagagtgctaccttatcttcaattattctttcaagatgggaaaaggcgggggctgcgtcccaagcaagaagaaggtcccttccggagtactcgccgccgccgacgaccccacgcgcggctcacgcgacgcgcctattcccgccgattccgccgccaattccaatgtcgttcccgattccggccaaaacgacgccatttcggaggcgtcgcatcccccggcgatggcggcggagaaattgaggatatttatcgtgttctactcgatgtacggacacgtggaggagctggcgaggaggatcaagaagggggtggacggcgtggagggagtggagggggtgctgtacagggtgccggagacgctgacggcggaggtgctggaggcgatgaaggcgccgtccaaggacgacggaattccggagatttcagcggcggagttggcggcggcggatggggtgttgttcgggtttccgacgaggtacgggtgcatggcggcgcagatgaaggcgtttttcgactcgaccggagggttgtggaaggagcagagactcgccggaaagccggccggcttttttgttagtactgggactcaaggaggtggccaagaaaccacagcttggacagctatcacccagttagcacaccatggaatgctatttgttcccattgggtatacttttggagctggcatgttcaagatggactccgtacgagggggttctccatatggtgctggtgtttttgctggcgatggctcaagacggccaagtgaaacagagttggggcttgcagagcatcaagggaagtatatggctgcatgttggttctttctcacatctttacttcgtatcgacgaccccacgcgcggctcacgcgacgcgcctattcccgccgattccgccgccaattccaatgtcgttcccgattccggccaaaacgacgccatttcggaggcgtcgcatcccccggcgatggcggcggagaaattgaggatatttatcgtgttctactcgatgtacggacacgtggaggagctggcgaggaggatcaagaagggggtggacggcgtggagggagtggagggggtgctgtacagggtgccggagacgctgacggcggaggtgctggaggcgatgaaggcgccgtccaaggacgacggaattccggagatttcagcggcggagttggcggcggcggatggggtgttgttcgggtttccgacgaggtacgggtgcatggcggcgcagatgaaggcgtttttcgactcgaccggagggttgtggaaggagcagagactcgccggaaagccggccggcttttttgttagtactgggactcaaggaggtggccaagaaaccacagcttggacagctatcacccagttagcacaccatggaatgctatttgttcccattgggtatacttttggagctggcatgttcaagatggactccgtacgagggggttctccatatggtgctggtgtttttgctggcgatggctcaagacggccaagtgaaacagagttggggcttgcagagcatcaagggaagtatatggctgcaagtgagtatgtttctgacagagacaaaaggcgtcaattcgtttctggcttcactggaagcgccggtttggcgcttataaccaagaatgaagctcggttatggacggatggccgttactttttgcaggcaacgcagcagcttagtgaccagtggcagcttatgcgaatgggggaagaccctgccgtagatgtctggatggcagattatctccctgaaggttcagccattggtatcgacccttggtgtatatcagtagacaccgcacagaaatgggagcgtgcttttgtcaagaatcagcagaagttggttcaaacttccacaaatttggtagatgaagtttggaaaagtcagccccatcaggaaattaatcctgtagttattcatcctttggaatttgctggttgttctgtagcagataagttgaaggatttgagaaaaaagctcgtccaagtgaaagctcatagtataatcatctcagcacttgatgaggtttgctggttgtataatattcgcgggactgatgttgattacagtccagttgttcatgcctttgccatagttactctgaactcagcgttcttctatgtggacaaaaggaaggtttcatctgaggtaaactcatacttggaaacgaacgggattgaagttcgggactataaagcagtgagcgcagatgtcagcttgcttgcatctaatcagcttaaaccttctattcaaggcaagggaactgaaactggaatagcaggaaatggtacaatcaaagcagaagaaagtaataatgacctcatatgggctgacccgggttattgctgttatgctttgtattcaaagctaaatcctgacaaggttctcttgcagccgtcacctttggcccttgcaaaagctctaaagaacccaattgagttggaagggttaaagaatgctcacattcgagatggtgcggctgttgtgcaatatcatgtctggttggataaacagatgcaggagatgtatggagcttctggtttctttttggaggatgaaacagataagaaaaaacagtcgaaaactgcaaaactaactgaggtgactgcaagcgataagctggaaggctttcgagcatcaaaagagaactttagaggattaagcttccctactatctcctcgtatctggatggaacaactgacataacacggacagttcatttcgggaaaccttcagctcatcagaaagcatgctatacggcagtcctcaagggtcacattgctctagggaatgctcgttttcctaatggaaccaatggtcattccctggacattctggctcgagttcctttgtggaaggatggtctcgattatcgacatggtactggtcatgggattggatcttacctaaatgttcatgaaggacctcatttaattagcttcagacctcgaaatgtcccactggaagataccatgactgtaacagatgaacctggatattatgaagatgggaattttggtataagactggagaacgtgcttataatcaagaaagctgaaacaaaattcaactttggtgacaagggctacttgcaatttgagcatataacatgggcaccctaccagaggaagttaattgacgtgggtcttttaacacccgaagagttggaatggctgaacacctaccatgccaattgtagatctattctggactcatacttggatgaatctgagaaggcatggctgaagaaagccactgaacccattagtgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006807 GO:0006810 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008270 GO:0009914 GO:0009926 GO:0010013 GO:0010817 GO:0016020 GO:0016787 GO:0019538 GO:0030145 GO:0031406 GO:0033218 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0071944 GO:0097159 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Creatinase_N Creatinase_N_2 Peptidase_M24 Peptidase_M24_C

Protein Analysis

1187

Amino Acids

130.24

Weight (kDa)

6.28

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36760 AT4G36760 AT4G36760
fragaria_vesca	FvH4_1g13980
malus_domestica	MD02G1152800.v1.1 MD15G1267200.v1.1
prunus_persica	Prupe.7G149300_v2.0.a1
pyrus_communis	pycom02g12060 pycom15g23280
rosa_chinensis	RchiOBHm_Chr2g0102281
rosa_laevigata	RLG00000017142 RLG00000017146
rosa_multiflora	Rmu_sc0005055.1_g000022 Rmu_sc0030874.1_g000002
rosa_roxburghii	Rroxscaffold_2G00140610
rosa_rugosa	Rorug02G0106100
rosa_samantha	Rh2AG154100 Rh2CG159700 Rh2DG159700
rosa_wichuraiana	Rw2G012050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1901, 3332
AccB1I	GGYRCC	6 cut(s)	5, 610, 652, 1357, 1399, 3403
AccB7I	CCANNNNNTGG	2 cut(s)	876, 1623
AccI	GTMKAC	3 cut(s)	932, 1679, 2079
AccII	CGCG	9 cut(s)	376, 378, 387, 392, 1123, 1125, 1134, 1139, 2337
AccIII	TCCGGA	3 cut(s)	344, 676, 1423
AclWI	GGATC	3 cut(s)	566, 1313, 3196
AcoI	YGGCCR	9 cut(s)	442, 822, 859, 1022, 1189, 1569, 1606, 1769, 1933
AcsI	RAATTY	6 cut(s)	672, 1419, 2146, 2216, 3301, 3353
AcuI	CTGAAG	4 cut(s)	2058, 3006, 3214, 3554
AcvI	CACGTG	2 cut(s)	538, 1285
AcyI	GRCGYC	7 cut(s)	453, 467, 653, 1200, 1214, 1400, 1855
AflIII	ACRYGT	3 cut(s)	79, 535, 1282
AjiI	CACGTC	1 cut(s)	3430
AjnI	CCWGG	3 cut(s)	8, 3114, 3280
Alw26I	GTCTC	6 cut(s)	611, 799, 1358, 1546, 1839, 3158
AlwI	GGATC	3 cut(s)	566, 1313, 3196
Ama87I	CYCGRG	2 cut(s)	2623, 3129
Aor13HI	TCCGGA	3 cut(s)	344, 676, 1423
ApeKI	GCWGC	7 cut(s)	315, 1073, 1820, 1957, 1960, 1978, 2680
ApoI	RAATTY	6 cut(s)	672, 1419, 2146, 2216, 3301, 3353
AseI	ATTAAT	1 cut(s)	2190
Asp700I	GAANNNNTTC	1 cut(s)	2916
AspS9I	GGNCC	5 cut(s)	38, 173, 337, 2695, 3212
AsuC2I	CCSGG	4 cut(s)	479, 1226, 2624, 2625
AsuHPI	GGTGA	5 cut(s)	880, 1627, 2679, 2902, 3377
AvaI	CYCGRG	2 cut(s)	2623, 3129
AvaII	GGWCC	4 cut(s)	38, 173, 337, 3212
BaeGI	GKGCMC	1 cut(s)	3406
BalI	TGGCCA	2 cut(s)	861, 1608
BanI	GGYRCC	6 cut(s)	5, 610, 652, 1357, 1399, 3403
BbrPI	CACGTG	2 cut(s)	538, 1285
BbsI	GAAGAC	1 cut(s)	2004
BbvI	GCAGC	7 cut(s)	302, 1060, 1807, 1969, 1972, 1990, 2692
BciT130I	CCWGG	3 cut(s)	10, 3116, 3282
BcnI	CCSGG	4 cut(s)	479, 1226, 2624, 2625
BcoDI	GTCTC	6 cut(s)	611, 799, 1358, 1546, 1839, 3158
BfaI	CTAG	1 cut(s)	3074
BfmI	CTRYAG	2 cut(s)	2196, 2232
BfoI	RGCGCY	4 cut(s)	656, 1403, 1887, 1898
BglI	GCCNNNNNGGC	1 cut(s)	1892
BglII	AGATCT	1 cut(s)	3488
BmcAI	AGTACT	3 cut(s)	351, 841, 1588
Bme1390I	CCNGG	7 cut(s)	10, 479, 1226, 2624, 2625, 3116, 3282
Bme18I	GGWCC	4 cut(s)	38, 173, 337, 3212
BmeT110I	CYCGRG	2 cut(s)	2623, 3129
BmgBI	CACGTC	1 cut(s)	3430
BmgT120I	GGNCC	5 cut(s)	38, 173, 337, 2695, 3212
BmiI	GGNNCC	9 cut(s)	7, 167, 339, 612, 654, 1359, 1401, 3100, 3405
BmrFI	CCNGG	7 cut(s)	10, 479, 1226, 2624, 2625, 3116, 3282
BmrI	ACTGGG	4 cut(s)	852, 886, 1599, 1633
BmsI	GCATC	7 cut(s)	481, 1063, 1228, 1810, 2522, 2793, 2933
BmuI	ACTGGG	4 cut(s)	852, 886, 1599, 1633
BoxI	GACNNNNGTC	1 cut(s)	3432
BpiI	GAAGAC	1 cut(s)	2004
BplI	GAGNNNNNCTC	2 cut(s)	2426, 2458
BpmI	CTGGAG	3 cut(s)	659, 1406, 3338
BpuEI	CTTGAG	5 cut(s)	834, 1000, 1581, 1747, 3041
BpuMI	CCSGG	4 cut(s)	479, 1226, 2624, 2625
BsaAI	YACGTR	2 cut(s)	538, 1285
BsaBI	GATNNNNATC	3 cut(s)	216, 509, 1256
BsaHI	GRCGYC	7 cut(s)	453, 467, 653, 1200, 1214, 1400, 1855
BsaI	GGTCTC	1 cut(s)	3158
BsaWI	WCCGGW	6 cut(s)	175, 344, 676, 782, 1423, 1529
Bse118I	RCCGGY	5 cut(s)	820, 824, 1567, 1571, 1886
Bse3DI	GCAATG	1 cut(s)	3066
Bse8I	GATNNNNATC	3 cut(s)	216, 509, 1256
BseAI	TCCGGA	3 cut(s)	344, 676, 1423
BseBI	CCWGG	3 cut(s)	10, 3116, 3282
BseJI	GATNNNNATC	3 cut(s)	216, 509, 1256
BseMI	GCAATG	1 cut(s)	3066
BseMII	CTCAG	6 cut(s)	152, 2313, 2409, 2424, 2877, 3510
BseRI	GAGGAG	6 cut(s)	38, 557, 568, 1304, 1315, 2956
BseSI	GKGCMC	1 cut(s)	3406
BseX3I	CGGCCG	2 cut(s)	822, 1569
BseXI	GCAGC	7 cut(s)	302, 1060, 1807, 1969, 1972, 1990, 2692
Bsh1236I	CGCG	9 cut(s)	376, 378, 387, 392, 1123, 1125, 1134, 1139, 2337
Bsh1285I	CGRYCG	4 cut(s)	783, 825, 1530, 1572
BshNI	GGYRCC	6 cut(s)	5, 610, 652, 1357, 1399, 3403
BsiEI	CGRYCG	4 cut(s)	783, 825, 1530, 1572
BsiHKCI	CYCGRG	2 cut(s)	2623, 3129
BsiWI	CGTACG	2 cut(s)	967, 1714
BslFI	GGGAC	7 cut(s)	305, 323, 859, 1606, 2353, 2489, 3230
BsmAI	GTCTC	6 cut(s)	611, 799, 1358, 1546, 1839, 3158
BsmBI	CGTCTC	2 cut(s)	611, 1358
BsmFI	GGGAC	7 cut(s)	305, 323, 859, 1606, 2353, 2489, 3230
BsmI	GAATGC	4 cut(s)	915, 1662, 2749, 3085
Bso31I	GGTCTC	1 cut(s)	3158
BsoBI	CYCGRG	2 cut(s)	2623, 3129
Bsp1286I	GDGCHC	1 cut(s)	3406
Bsp13I	TCCGGA	3 cut(s)	344, 676, 1423
Bsp1407I	TGTACA	2 cut(s)	603, 1350
Bsp143I	GATC	5 cut(s)	228, 558, 1305, 3188, 3488
Bsp19I	CCATGG	2 cut(s)	904, 1651
BspCNI	CTCAG	6 cut(s)	153, 2312, 2408, 2425, 2878, 3511
BspEI	TCCGGA	3 cut(s)	344, 676, 1423
BspFNI	CGCG	9 cut(s)	376, 378, 387, 392, 1123, 1125, 1134, 1139, 2337
BspHI	TCATGA	2 cut(s)	54, 3205
BspLI	GGNNCC	9 cut(s)	7, 167, 339, 612, 654, 1359, 1401, 3100, 3405
BspPI	GGATC	3 cut(s)	566, 1313, 3196
BspT107I	GGYRCC	6 cut(s)	5, 610, 652, 1357, 1399, 3403
BspTNI	GGTCTC	1 cut(s)	3158
BsrDI	GCAATG	1 cut(s)	3066
BsrFI	RCCGGY	5 cut(s)	820, 824, 1567, 1571, 1886
BsrGI	TGTACA	2 cut(s)	603, 1350
BssAI	RCCGGY	5 cut(s)	820, 824, 1567, 1571, 1886
BssMI	GATC	5 cut(s)	228, 558, 1305, 3188, 3488
BssNAI	GTATAC	2 cut(s)	933, 1680
BssNI	GRCGYC	7 cut(s)	453, 467, 653, 1200, 1214, 1400, 1855
BssT1I	CCWWGG	6 cut(s)	169, 660, 904, 1407, 1651, 2063
Bst1107I	GTATAC	2 cut(s)	933, 1680
Bst2UI	CCWGG	3 cut(s)	10, 3116, 3282
Bst4CI	ACNGT	4 cut(s)	2357, 2865, 3004, 3268
Bst6I	CTCTTC	3 cut(s)	15, 258, 3444
BstACI	GRCGYC	7 cut(s)	453, 467, 653, 1200, 1214, 1400, 1855
BstAPI	GCANNNNNTGC	1 cut(s)	1984
BstAUI	TGTACA	2 cut(s)	603, 1350
BstBAI	YACGTR	2 cut(s)	538, 1285
BstDEI	CTNAG	7 cut(s)	161, 1964, 2299, 2395, 2433, 2886, 3519
BstDSI	CCRYGG	2 cut(s)	904, 1651
BstENI	CCTNNNNNAGG	1 cut(s)	3412
BstFNI	CGCG	9 cut(s)	376, 378, 387, 392, 1123, 1125, 1134, 1139, 2337
BstH2I	RGCGCY	4 cut(s)	656, 1403, 1887, 1898
BstKTI	GATC	5 cut(s)	231, 561, 1308, 3191, 3491
BstMAI	GTCTC	6 cut(s)	611, 799, 1358, 1546, 1839, 3158
BstMBI	GATC	5 cut(s)	228, 558, 1305, 3188, 3488
BstMCI	CGRYCG	4 cut(s)	783, 825, 1530, 1572
BstNI	CCWGG	3 cut(s)	10, 3116, 3282
BstNSI	RCATGY	5 cut(s)	83, 952, 1080, 1699, 3042
BstPAI	GACNNNNGTC	1 cut(s)	3432
BstSCI	CCNGG	7 cut(s)	8, 477, 1224, 2622, 2623, 3114, 3280
BstSFI	CTRYAG	2 cut(s)	2196, 2232
BstSLI	GKGCMC	1 cut(s)	3406
BstUI	CGCG	9 cut(s)	376, 378, 387, 392, 1123, 1125, 1134, 1139, 2337
BstV1I	GCAGC	7 cut(s)	302, 1060, 1807, 1969, 1972, 1990, 2692
BstV2I	GAAGAC	1 cut(s)	2004
BstX2I	RGATCY	2 cut(s)	3188, 3488
BstXI	CCANNNNNNTGG	1 cut(s)	2149
BstYI	RGATCY	2 cut(s)	3188, 3488
BstZ17I	GTATAC	2 cut(s)	933, 1680
BstZI	CGGCCG	2 cut(s)	822, 1569
BtgI	CCRYGG	2 cut(s)	904, 1651
BtgZI	GCGATG	6 cut(s)	497, 659, 1023, 1244, 1406, 1770
BtrI	CACGTC	1 cut(s)	3430
BtsI	GCAGTG	2 cut(s)	120, 2493
BtsIMutI	CAGTG	6 cut(s)	120, 1875, 1979, 2493, 3248, 3543
CciI	TCATGA	2 cut(s)	54, 3205
Cfr10I	RCCGGY	5 cut(s)	820, 824, 1567, 1571, 1886
Cfr13I	GGNCC	5 cut(s)	38, 173, 337, 2695, 3212
Cfr9I	CCCGGG	1 cut(s)	2623
DdeI	CTNAG	7 cut(s)	161, 1964, 2299, 2395, 2433, 2886, 3519
DinI	GGCGCC	2 cut(s)	654, 1401
DpnI	GATC	5 cut(s)	230, 560, 1307, 3190, 3490
DpnII	GATC	5 cut(s)	228, 558, 1305, 3188, 3488
EaeI	YGGCCR	9 cut(s)	442, 822, 859, 1022, 1189, 1569, 1606, 1769, 1933
EagI	CGGCCG	2 cut(s)	822, 1569
Eam1104I	CTCTTC	3 cut(s)	15, 258, 3444
EarI	CTCTTC	3 cut(s)	15, 258, 3444
EclXI	CGGCCG	2 cut(s)	822, 1569
Eco130I	CCWWGG	6 cut(s)	169, 660, 904, 1407, 1651, 2063
Eco31I	GGTCTC	1 cut(s)	3158
Eco47I	GGWCC	4 cut(s)	38, 173, 337, 3212
Eco52I	CGGCCG	2 cut(s)	822, 1569
Eco57I	CTGAAG	4 cut(s)	2058, 3006, 3214, 3554
Eco72I	CACGTG	2 cut(s)	538, 1285
Eco88I	CYCGRG	2 cut(s)	2623, 3129
EcoNI	CCTNNNNNAGG	1 cut(s)	3412
EcoO109I	RGGNCCY	2 cut(s)	337, 3212
EcoRI	GAATTC	2 cut(s)	672, 1419
EcoRII	CCWGG	3 cut(s)	8, 3114, 3280
EcoT14I	CCWWGG	6 cut(s)	169, 660, 904, 1407, 1651, 2063
EgeI	GGCGCC	2 cut(s)	654, 1401
EheI	GGCGCC	2 cut(s)	654, 1401
ErhI	CCWWGG	6 cut(s)	169, 660, 904, 1407, 1651, 2063
Esp3I	CGTCTC	2 cut(s)	611, 1358
FalI	AAGNNNNNCTT	4 cut(s)	2660, 2692, 3362, 3394
FaqI	GGGAC	7 cut(s)	305, 323, 859, 1606, 2353, 2489, 3230
FauI	CCCGC	4 cut(s)	302, 409, 1156, 2330
FauNDI	CATATG	3 cut(s)	985, 1732, 2612
FblI	GTMKAC	3 cut(s)	932, 1679, 2079
FspBI	CTAG	1 cut(s)	3074
GsuI	CTGGAG	3 cut(s)	659, 1406, 3338
HaeII	RGCGCY	4 cut(s)	656, 1403, 1887, 1898
Hin1I	GRCGYC	7 cut(s)	453, 467, 653, 1200, 1214, 1400, 1855
HindIII	AAGCTT	2 cut(s)	110, 2950
HphI	GGTGA	5 cut(s)	880, 1627, 2679, 2902, 3377
Hpy166II	GTNNAC	8 cut(s)	158, 574, 933, 1321, 1680, 2080, 2413, 2440
Hpy8I	GTNNAC	8 cut(s)	158, 574, 933, 1321, 1680, 2080, 2413, 2440
HpyCH4III	ACNGT	4 cut(s)	2357, 2865, 3004, 3268
HpyCH4IV	ACGT	4 cut(s)	537, 1284, 3324, 3429
HpyF3I	CTNAG	7 cut(s)	161, 1964, 2299, 2395, 2433, 2886, 3519
HpySE526I	ACGT	4 cut(s)	537, 1284, 3324, 3429
Hsp92I	GRCGYC	7 cut(s)	453, 467, 653, 1200, 1214, 1400, 1855
KasI	GGCGCC	2 cut(s)	652, 1399
Kpn2I	TCCGGA	3 cut(s)	344, 676, 1423
KroI	GCCGGC	4 cut(s)	820, 824, 1567, 1571
KroNI	GCCGGC	4 cut(s)	822, 826, 1569, 1573
Kzo9I	GATC	5 cut(s)	228, 558, 1305, 3188, 3488
LmnI	GCTCC	8 cut(s)	544, 799, 941, 1291, 1546, 1688, 2098, 2819
Lsp1109I	GCAGC	7 cut(s)	302, 1060, 1807, 1969, 1972, 1990, 2692
LweI	GCATC	7 cut(s)	481, 1063, 1228, 1810, 2522, 2793, 2933
MaeI	CTAG	1 cut(s)	3074
MaeII	ACGT	4 cut(s)	537, 1284, 3324, 3429
MaeIII	GTNAC	8 cut(s)	1937, 1967, 2383, 2685, 2890, 3062, 3268, 3365
MalI	GATC	5 cut(s)	230, 560, 1307, 3190, 3490
MboI	GATC	5 cut(s)	228, 558, 1305, 3188, 3488
MfeI	CAATTG	3 cut(s)	91, 2721, 3481
MflI	RGATCY	2 cut(s)	3188, 3488
MhlI	GDGCHC	1 cut(s)	3406
MlsI	TGGCCA	2 cut(s)	861, 1608
MluNI	TGGCCA	2 cut(s)	861, 1608
Mly113I	GGCGCC	2 cut(s)	653, 1400
MlyI	GAGTC	9 cut(s)	770, 801, 841, 956, 1517, 1548, 1588, 1703, 3494
MmeI	TCCRAC	5 cut(s)	755, 1502, 2709, 2772, 3435
Mox20I	TGGCCA	2 cut(s)	861, 1608
MroI	TCCGGA	3 cut(s)	344, 676, 1423
MroNI	GCCGGC	4 cut(s)	820, 824, 1567, 1571
MroXI	GAANNNNTTC	1 cut(s)	2916
MscI	TGGCCA	2 cut(s)	861, 1608
MseI	TTAA	7 cut(s)	2190, 2526, 2738, 2948, 3221, 3422, 3440
MslI	CAYNNNNRTG	3 cut(s)	78, 2092, 3557
Msp20I	TGGCCA	2 cut(s)	861, 1608
MspA1I	CMGCKG	2 cut(s)	689, 1436
MspR9I	CCNGG	7 cut(s)	10, 479, 1226, 2624, 2625, 3116, 3282
MunI	CAATTG	3 cut(s)	91, 2721, 3481
Mva1269I	GAATGC	4 cut(s)	915, 1662, 2749, 3085
MvaI	CCWGG	3 cut(s)	10, 3116, 3282
MvnI	CGCG	9 cut(s)	376, 378, 387, 392, 1123, 1125, 1134, 1139, 2337
NaeI	GCCGGC	4 cut(s)	822, 826, 1569, 1573
NarI	GGCGCC	2 cut(s)	653, 1400
NciI	CCSGG	4 cut(s)	479, 1226, 2624, 2625
NcoI	CCATGG	2 cut(s)	904, 1651
NdeI	CATATG	3 cut(s)	985, 1732, 2612
NdeII	GATC	5 cut(s)	228, 558, 1305, 3188, 3488
NgoMIV	GCCGGC	4 cut(s)	820, 824, 1567, 1571
NlaIV	GGNNCC	9 cut(s)	7, 167, 339, 612, 654, 1359, 1401, 3100, 3405
NmuCI	GTSAC	5 cut(s)	1967, 2685, 2890, 3062, 3365
NspI	RCATGY	5 cut(s)	83, 952, 1080, 1699, 3042
PaeI	GCATGC	1 cut(s)	3042
PaeR7I	CTCGAG	1 cut(s)	3129
PagI	TCATGA	2 cut(s)	54, 3205
PciI	ACATGT	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	1 cut(s)	360
PctI	GAATGC	4 cut(s)	915, 1662, 2749, 3085
PdiI	GCCGGC	4 cut(s)	822, 826, 1569, 1573
PdmI	GAANNNNTTC	1 cut(s)	2916
PfeI	GAWTC	8 cut(s)	49, 70, 407, 437, 1154, 1184, 2116, 3515
Pfl23II	CGTACG	2 cut(s)	967, 1714
PflMI	CCANNNNNTGG	2 cut(s)	876, 1623
PleI	GAGTC	9 cut(s)	770, 801, 841, 956, 1517, 1548, 1588, 1703, 3494
PluTI	GGCGCC	2 cut(s)	656, 1403
PmaCI	CACGTG	2 cut(s)	538, 1285
PmlI	CACGTG	2 cut(s)	538, 1285
PpsI	GAGTC	9 cut(s)	770, 801, 841, 956, 1517, 1548, 1588, 1703, 3494
Ppu21I	YACGTR	2 cut(s)	538, 1285
PpuMI	RGGWCCY	2 cut(s)	337, 3212
PscI	ACATGT	1 cut(s)	79
PshAI	GACNNNNGTC	1 cut(s)	3432
PshBI	ATTAAT	1 cut(s)	2190
PsiI	TTATAA	2 cut(s)	1901, 3332
Psp5II	RGGWCCY	2 cut(s)	337, 3212
Psp6I	CCWGG	3 cut(s)	8, 3114, 3280
PspCI	CACGTG	2 cut(s)	538, 1285
PspGI	CCWGG	3 cut(s)	8, 3114, 3280
PspLI	CGTACG	2 cut(s)	967, 1714
PspN4I	GGNNCC	9 cut(s)	7, 167, 339, 612, 654, 1359, 1401, 3100, 3405
PspPI	GGNCC	5 cut(s)	38, 173, 337, 2695, 3212
PspPPI	RGGWCCY	2 cut(s)	337, 3212
PspXI	VCTCGAGB	1 cut(s)	3129
PsuI	RGATCY	2 cut(s)	3188, 3488
RseI	CAYNNNNRTG	3 cut(s)	78, 2092, 3557
SaqAI	TTAA	7 cut(s)	2190, 2526, 2738, 2948, 3221, 3422, 3440
Sau3AI	GATC	5 cut(s)	228, 558, 1305, 3188, 3488
Sau96I	GGNCC	5 cut(s)	38, 173, 337, 2695, 3212
ScaI	AGTACT	3 cut(s)	351, 841, 1588
SchI	GAGTC	9 cut(s)	770, 801, 841, 956, 1517, 1548, 1588, 1703, 3494
ScrFI	CCNGG	7 cut(s)	10, 479, 1226, 2624, 2625, 3116, 3282
SduI	GDGCHC	1 cut(s)	3406
SfaNI	GCATC	7 cut(s)	481, 1063, 1228, 1810, 2522, 2793, 2933
SfcI	CTRYAG	2 cut(s)	2196, 2232
SfoI	GGCGCC	2 cut(s)	654, 1401
Sfr274I	CTCGAG	1 cut(s)	3129
SinI	GGWCC	4 cut(s)	38, 173, 337, 3212
SlaI	CTCGAG	1 cut(s)	3129
SmaI	CCCGGG	1 cut(s)	2625
SmiMI	CAYNNNNRTG	3 cut(s)	78, 2092, 3557
SmlI	CTYRAG	6 cut(s)	849, 1015, 1596, 1762, 3056, 3129
SmoI	CTYRAG	6 cut(s)	849, 1015, 1596, 1762, 3056, 3129
SphI	GCATGC	1 cut(s)	3042
SspDI	GGCGCC	2 cut(s)	652, 1399
SspI	AATATT	1 cut(s)	2332
SspMI	CTAG	1 cut(s)	3074
StyD4I	CCNGG	7 cut(s)	8, 477, 1224, 2622, 2623, 3114, 3280
StyI	CCWWGG	6 cut(s)	169, 660, 904, 1407, 1651, 2063
TaaI	ACNGT	4 cut(s)	2357, 2865, 3004, 3268
TaiI	ACGT	4 cut(s)	540, 1287, 3327, 3432
TatI	WGTACW	5 cut(s)	349, 603, 839, 1350, 1586
TfiI	GAWTC	8 cut(s)	49, 70, 407, 437, 1154, 1184, 2116, 3515
Tru1I	TTAA	7 cut(s)	2190, 2526, 2738, 2948, 3221, 3422, 3440
Tru9I	TTAA	7 cut(s)	2190, 2526, 2738, 2948, 3221, 3422, 3440
TscAI	CASTG	6 cut(s)	127, 1882, 1979, 2493, 3255, 3550
TseFI	GTSAC	5 cut(s)	1967, 2685, 2890, 3062, 3365
TseI	GCWGC	7 cut(s)	315, 1073, 1820, 1957, 1960, 1978, 2680
Tsp45I	GTSAC	5 cut(s)	1967, 2685, 2890, 3062, 3365
TspGWI	ACGGA	8 cut(s)	546, 684, 955, 1293, 1431, 1702, 1943, 3013
TspMI	CCCGGG	1 cut(s)	2623
TspRI	CASTG	6 cut(s)	127, 1882, 1979, 2493, 3255, 3550
Van91I	CCANNNNNTGG	2 cut(s)	876, 1623
VpaK11BI	GGWCC	4 cut(s)	38, 173, 337, 3212
VspI	ATTAAT	1 cut(s)	2190
XagI	CCTNNNNNAGG	1 cut(s)	3412
XapI	RAATTY	6 cut(s)	672, 1419, 2146, 2216, 3301, 3353
XceI	RCATGY	5 cut(s)	83, 952, 1080, 1699, 3042
XhoI	CTCGAG	1 cut(s)	3129
XmaI	CCCGGG	1 cut(s)	2623
XmiI	GTMKAC	3 cut(s)	932, 1679, 2079
XmnI	GAANNNNTTC	1 cut(s)	2916
XspI	CTAG	1 cut(s)	3074
ZrmI	AGTACT	3 cut(s)	351, 841, 1588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.