Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001703

Physical Location & Seq

Genomic Coordinates Forward (+)

9058580 .. 9060538

Gene Structure 1959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0106100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGATTACAAGGTGTTTTTTTTCAAGGAATTATGCAGTACTGATACCCATGCAGGAAAGTGAACGTCAGGCTGCAATATATCATTTAAGTTCTAATTCATGGAAAAAGCTAAGTGCTCCTTTGCTTGAGCATGTTATTCTATATTTTCGAGATTATTTTCGAGATTGTAATATTACTGACACCTATGTCAACGGAAATGTTCACTGGTTGGGTTTTGAGGACTACCCTGGTCGCAGAGCAATGTGTATTCTTTCTTTTGACATGGTTAGTGAAGTGTTTGCAAAGATAAAGCTTCCAGACTGGGACGAAACTGAATATCTCCTTGCAGTGTTTAATGAATCTCTTTCTCTTATTCTTTATCCAAAGACGCCAGATTATCCCATGTTTACAGGTTACATTAAATGTTTTGACATATGGGTTATGAATGACTATGGTAACGACAGATCTTGGACTAAGCTTTTCACAACTGGACCAGTTGCATCTGCTTACAGACTACTAGGTTTTTGGCGAAATGGCGACTTTCTTATACAACATGATTTTGGATACACCATCTCTTACGACCCAGGTACCCAAGAGATCGAGCAGCTTTGTTTTGGTGAAGGGCTTCATTTGAACCAATCTTGTATCTACTCAGAGAGCCTAGTTTCAGTGACGGGGATTGCACGAAATGATTTTGAAATAGTAGTTGAAGACTTTCCCTTCGTCATGACTCCAGACATGAAGAGAGTCCTAGACTATGTAGATAAATGTCCATCTTGTTCCCGTTTAACTTCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006807 GO:0006810 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008270 GO:0009914 GO:0009926 GO:0010013 GO:0010817 GO:0016020 GO:0016787 GO:0019538 GO:0030145 GO:0031406 GO:0033218 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0071944 GO:0097159 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Creatinase_N Creatinase_N_2 Peptidase_M24 Peptidase_M24_C

Protein Analysis

259

Amino Acids

30.16

Weight (kDa)

4.83

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	10 - 185	1.4e-14	F-box associated beta propeller domain
FBA_3	PF08268	11 - 158	1.1e-06	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36750
fragaria_vesca	FvH4_1g13950 FvH4_2g08230 FvH4_2g08230 FvH4_2g08230
malus_domestica	MD02G1152700.v1.1 MD05G1334200.v1.1 MD10G1081100.v1.1 MD10G1309100.v1.1
prunus_persica	Prupe.4G031000_v2.0.a1 Prupe.4G031000_v2.0.a1 Prupe.7G149400_v2.0.a1 Prupe.8G102400_v2.0.a1
pyrus_communis	pycom02g12050 pycom05g30590 pycom10g06420 pycom10g26050 pycom15g23270
rosa_chinensis	RchiOBHm_Chr2g0102261 RchiOBHm_Chr6g0263041 RchiOBHm_Chr6g0263101
rosa_laevigata	RLG00000014375 RLG00000014383 RLG00000017140
rosa_multiflora	Rmu_co8453355.1_g000001 Rmu_sc0002146.1_g000009 Rmu_sc0002479.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140620 Rroxscaffold_7G00204680 Rroxscaffold_7G00204780
rosa_rugosa	Rorug02G0106100 Rorug02G0106100 Rorug06G0002900 Rorug06G0003500
rosa_samantha	Rh2AG154000 Rh2BG160000 Rh2CG159600 Rh2DG159600 Rh6AG122100 Rh6BG115200 Rh6BG116700 Rh6CG113900 Rh6CG115200 Rh6DG103000 Rh6DG103800
rosa_wichuraiana	Rw2G012040 Rw6G010470 Rw6G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
Acc65I	GGTACC	1 cut(s)	566
AccB1I	GGYRCC	1 cut(s)	566
AcyI	GRCGYC	1 cut(s)	368
AfaI	GTAC	2 cut(s)	39, 568
AgsI	TTSAA	4 cut(s)	24, 613, 677, 689
AjnI	CCWGG	2 cut(s)	226, 562
AluBI	AGCT	4 cut(s)	109, 292, 457, 586
AluI	AGCT	4 cut(s)	109, 292, 457, 586
Alw21I	GWGCWC	1 cut(s)	118
ApeKI	GCWGC	2 cut(s)	71, 583
ArsI	GACNNNNNNTTYG	2 cut(s)	683, 715
Asp700I	GAANNNNTTC	2 cut(s)	603, 693
Asp718I	GGTACC	1 cut(s)	566
AspS9I	GGNCC	1 cut(s)	470
AsuHPI	GGTGA	1 cut(s)	608
AvaII	GGWCC	1 cut(s)	470
BaeI	ACNNNNGTAYC	2 cut(s)	550, 583
BanI	GGYRCC	1 cut(s)	566
BbsI	GAAGAC	1 cut(s)	696
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	2 cut(s)	58, 595
BccI	CCATC	2 cut(s)	557, 760
BciT130I	CCWGG	2 cut(s)	228, 564
BciVI	GTATCC	1 cut(s)	536
BfaI	CTAG	3 cut(s)	497, 641, 731
BfuI	GTATCC	1 cut(s)	536
BglII	AGATCT	1 cut(s)	443
BisI	GCNGC	2 cut(s)	72, 584
BlsI	GCNGC	2 cut(s)	73, 585
BmcAI	AGTACT	1 cut(s)	39
Bme1390I	CCNGG	2 cut(s)	228, 564
Bme18I	GGWCC	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	1 cut(s)	568
BmrFI	CCNGG	2 cut(s)	228, 564
BmrI	ACTGGG	1 cut(s)	310
BmsI	GCATC	1 cut(s)	488
BmuI	ACTGGG	1 cut(s)	310
BpiI	GAAGAC	1 cut(s)	696
BpmI	CTGGAG	1 cut(s)	696
BpuEI	CTTGAG	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	226, 562
Bse1I	ACTGG	4 cut(s)	209, 305, 472, 473
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	2 cut(s)	228, 564
BseDI	CCNNGG	2 cut(s)	226, 562
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	645
BseNI	ACTGG	4 cut(s)	209, 305, 472, 473
BseXI	GCAGC	2 cut(s)	58, 595
BshNI	GGYRCC	1 cut(s)	566
BsiHKAI	GWGCWC	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	2 cut(s)	443, 576
BspCNI	CTCAG	1 cut(s)	644
BspHI	TCATGA	1 cut(s)	705
BspLI	GGNNCC	1 cut(s)	568
BspT107I	GGYRCC	1 cut(s)	566
BsrDI	GCAATG	1 cut(s)	246
BsrI	ACTGG	4 cut(s)	209, 305, 472, 473
BssECI	CCNNGG	2 cut(s)	226, 562
BssMI	GATC	2 cut(s)	443, 576
BssNI	GRCGYC	1 cut(s)	368
Bst2UI	CCWGG	2 cut(s)	228, 564
Bst6I	CTCTTC	1 cut(s)	716
BstACI	GRCGYC	1 cut(s)	368
BstDEI	CTNAG	3 cut(s)	110, 453, 631
BstKTI	GATC	2 cut(s)	446, 579
BstMBI	GATC	2 cut(s)	443, 576
BstNI	CCWGG	2 cut(s)	228, 564
BstNSI	RCATGY	1 cut(s)	134
BstSCI	CCNGG	2 cut(s)	226, 562
BstV1I	GCAGC	2 cut(s)	58, 595
BstV2I	GAAGAC	1 cut(s)	696
BstX2I	RGATCY	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	443
BsuI	GTATCC	1 cut(s)	536
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	3 cut(s)	202, 333, 654
CciI	TCATGA	1 cut(s)	705
Cfr13I	GGNCC	1 cut(s)	470
CseI	GACGC	1 cut(s)	376
Csp6I	GTAC	2 cut(s)	38, 567
CviAII	CATG	8 cut(s)	49, 99, 131, 262, 382, 533, 706, 718
CviJI	RGCY	7 cut(s)	71, 109, 292, 457, 586, 604, 639
CviKI_1	RGCY	7 cut(s)	71, 109, 292, 457, 586, 604, 639
CviQI	GTAC	2 cut(s)	38, 567
DdeI	CTNAG	3 cut(s)	110, 453, 631
DpnI	GATC	2 cut(s)	445, 578
DpnII	GATC	2 cut(s)	443, 576
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	716
EarI	CTCTTC	1 cut(s)	716
Eco47I	GGWCC	1 cut(s)	470
EcoRII	CCWGG	2 cut(s)	226, 562
FaeI	CATG	8 cut(s)	52, 102, 134, 265, 385, 536, 709, 721
FalI	AAGNNNNNCTT	2 cut(s)	103, 135
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	8 cut(s)	48, 98, 130, 261, 381, 532, 705, 717
FauNDI	CATATG	1 cut(s)	413
Fnu4HI	GCNGC	2 cut(s)	72, 584
Fsp4HI	GCNGC	2 cut(s)	72, 584
FspBI	CTAG	3 cut(s)	497, 641, 731
GluI	GCNGC	2 cut(s)	72, 584
GsuI	CTGGAG	1 cut(s)	696
HgaI	GACGC	1 cut(s)	376
Hin1I	GRCGYC	1 cut(s)	368
Hin1II	CATG	8 cut(s)	52, 102, 134, 265, 385, 536, 709, 721
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HindIII	AAGCTT	2 cut(s)	290, 455
HinfI	GANTC	3 cut(s)	338, 709, 726
HphI	GGTGA	1 cut(s)	608
Hpy166II	GTNNAC	4 cut(s)	62, 190, 202, 387
Hpy188I	TCNGA	2 cut(s)	634, 775
Hpy188III	TCNNGA	5 cut(s)	149, 161, 296, 706, 713
Hpy8I	GTNNAC	4 cut(s)	62, 190, 202, 387
HpyAV	CCTTC	2 cut(s)	593, 709
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	7 cut(s)	35, 52, 74, 281, 326, 479, 662
HpyF3I	CTNAG	3 cut(s)	110, 453, 631
HpySE526I	ACGT	1 cut(s)	64
Hsp92I	GRCGYC	1 cut(s)	368
Hsp92II	CATG	8 cut(s)	52, 102, 134, 265, 385, 536, 709, 721
KpnI	GGTACC	1 cut(s)	570
Kzo9I	GATC	2 cut(s)	443, 576
LmnI	GCTCC	1 cut(s)	121
Lsp1109I	GCAGC	2 cut(s)	58, 595
LweI	GCATC	1 cut(s)	488
MaeI	CTAG	3 cut(s)	497, 641, 731
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	3 cut(s)	392, 434, 649
MalI	GATC	2 cut(s)	445, 578
MboI	GATC	2 cut(s)	443, 576
MboII	GAAGA	2 cut(s)	701, 733
MflI	RGATCY	1 cut(s)	443
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	2 cut(s)	28, 94
MlyI	GAGTC	2 cut(s)	703, 735
MnlI	CCTC	1 cut(s)	211
MroXI	GAANNNNTTC	2 cut(s)	603, 693
MseI	TTAA	4 cut(s)	86, 333, 399, 767
MspR9I	CCNGG	2 cut(s)	228, 564
MvaI	CCWGG	2 cut(s)	228, 564
NdeI	CATATG	1 cut(s)	413
NdeII	GATC	2 cut(s)	443, 576
NlaIII	CATG	8 cut(s)	52, 102, 134, 265, 385, 536, 709, 721
NlaIV	GGNNCC	1 cut(s)	568
NmuCI	GTSAC	1 cut(s)	649
NspI	RCATGY	1 cut(s)	134
PagI	TCATGA	1 cut(s)	705
PdmI	GAANNNNTTC	2 cut(s)	603, 693
PfeI	GAWTC	1 cut(s)	338
PkrI	GCNGC	2 cut(s)	73, 585
PleI	GAGTC	2 cut(s)	703, 734
PpsI	GAGTC	2 cut(s)	703, 734
Psp6I	CCWGG	2 cut(s)	226, 562
PspGI	CCWGG	2 cut(s)	226, 562
PspN4I	GGNNCC	1 cut(s)	568
PspPI	GGNCC	1 cut(s)	470
PsuI	RGATCY	1 cut(s)	443
RsaI	GTAC	2 cut(s)	39, 568
RsaNI	GTAC	2 cut(s)	38, 567
SaqAI	TTAA	4 cut(s)	86, 333, 399, 767
SatI	GCNGC	2 cut(s)	72, 584
Sau3AI	GATC	2 cut(s)	443, 576
Sau96I	GGNCC	1 cut(s)	470
ScaI	AGTACT	1 cut(s)	39
SchI	GAGTC	2 cut(s)	703, 735
ScrFI	CCNGG	2 cut(s)	228, 564
SduI	GDGCHC	1 cut(s)	118
SfaNI	GCATC	1 cut(s)	488
SinI	GGWCC	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	2 cut(s)	28, 94
SspI	AATATT	1 cut(s)	172
SspMI	CTAG	3 cut(s)	497, 641, 731
StyD4I	CCNGG	2 cut(s)	226, 562
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	3 cut(s)	148, 160, 579
TasI	AATT	2 cut(s)	28, 94
TatI	WGTACW	1 cut(s)	37
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	4 cut(s)	86, 333, 399, 767
Tru9I	TTAA	4 cut(s)	86, 333, 399, 767
TscAI	CASTG	3 cut(s)	209, 333, 654
TseFI	GTSAC	1 cut(s)	649
TseI	GCWGC	2 cut(s)	71, 583
Tsp45I	GTSAC	1 cut(s)	649
TspDTI	ATGAA	5 cut(s)	87, 351, 437, 596, 734
TspGWI	ACGGA	1 cut(s)	207
TspRI	CASTG	3 cut(s)	209, 333, 654
VpaK11BI	GGWCC	1 cut(s)	470
XceI	RCATGY	1 cut(s)	134
XmnI	GAANNNNTTC	2 cut(s)	603, 693
XspI	CTAG	3 cut(s)	497, 641, 731
ZrmI	AGTACT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.