Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001703

Physical Location & Seq

Genomic Coordinates Reverse (-)

7156039 .. 7159621

Gene Structure 3583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g08230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGCCAGCGAAGTTCCTACCTTCTTGGTCATCTGAGAGAGCCTATTGTCCACTAAATTCCAGTCTGTCCAAAGACAGCTCTGGGTTTCAAGTCAAACGTAGTTCATGCTCGTTGCCCACTAACACTCTCTTTCTCCTTTTGTCAAGTTTCATGGGTTGTGTGCCCAGCAAGAATAGGCCACCGGCGGGAGTCTCCGGCGATGATCTTCCTAACCCAGAAAGCGATGCTCTTGTTTCAGACCAAAACCAAACCCAACCCACAGACCCAGTTGAGGCTGATGGGGTTGTTGCAGAGCAAGAACAAGAAAACAAGAAGAAGAAGCTGAGGGTGTTCATAGTGTTCTACTCAATGTATGGTCATGTGGAGATGATGGCCAGAGAGATTAAGAAAGGGGTTGATTCCACTGAAGGGGTTGAAGGAGTTTTGTACCGGGTTCCGGAGACTCTGTCGTCTGGGGTGTTGGAGCAGATGAAGGTGCCCAAAAATGATGATGGGGTGGTGCCTGTGATAGTGCCTGAGAAACTGGTGGAGGCTGATGGGGTGTTGTTCGGGTTTCCGACACGGTATGGGTCAATGGCTGCTCAGATGAAGGCCTTTTTTGACTCCACGGGGGAGCTGTGGAAGGAGCAGAAGCTTGCAGGGGTGCCTGCTGGGTTCTTTGTCAGTACTGGCACACAGGGCGGTGGACAGGAGACAACTGTTTGGACAGCCATTACTCAGTTAGCACACCATGGAATGATTTATGTTCCAATTGGCTACACCTTTGGTGCTGGAATGTTCCAAATGGACTCCCTTAGAGGAGGGTCTCCATATGGTTCTGGAGTTCTTTCTGGAGATGGCACGAGGAAACCAACTGAGACAGAGCTCGCTCTTGCAGAGCATCACGGAAAATACATGGCTACTATTGTCAAGAAGCTTGCACGGCCATCTAGTTTTCATGTGCCAGTTGGACAAAATGTTGAAAGGAAAAGACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

326

Amino Acids

35.24

Weight (kDa)

6.33

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavodoxin_1	PF00258	112 - 245	3.8e-10	Flavodoxin
FMN_red	PF03358	124 - 252	1.5e-11	NADPH-dependent FMN reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36750
fragaria_vesca	FvH4_1g13950 FvH4_2g08230 FvH4_2g08230 FvH4_2g08230
malus_domestica	MD02G1152700.v1.1 MD05G1334200.v1.1 MD10G1081100.v1.1 MD10G1309100.v1.1
prunus_persica	Prupe.4G031000_v2.0.a1 Prupe.4G031000_v2.0.a1 Prupe.7G149400_v2.0.a1 Prupe.8G102400_v2.0.a1
pyrus_communis	pycom02g12050 pycom05g30590 pycom10g06420 pycom10g26050 pycom15g23270
rosa_chinensis	RchiOBHm_Chr2g0102261 RchiOBHm_Chr6g0263041 RchiOBHm_Chr6g0263101
rosa_laevigata	RLG00000014375 RLG00000014383 RLG00000017140
rosa_multiflora	Rmu_co8453355.1_g000001 Rmu_sc0002146.1_g000009 Rmu_sc0002479.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140620 Rroxscaffold_7G00204680 Rroxscaffold_7G00204780
rosa_rugosa	Rorug02G0106100 Rorug02G0106100 Rorug06G0002900 Rorug06G0003500
rosa_samantha	Rh2AG154000 Rh2BG160000 Rh2CG159600 Rh2DG159600 Rh6AG122100 Rh6BG115200 Rh6BG116700 Rh6CG113900 Rh6CG115200 Rh6DG103000 Rh6DG103800
rosa_wichuraiana	Rw2G012040 Rw6G010470 Rw6G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	448
AccB1I	GGYRCC	3 cut(s)	475, 499, 643
AccIII	TCCGGA	1 cut(s)	436
AciI	CCGC	2 cut(s)	185, 681
AcoI	YGGCCR	2 cut(s)	372, 923
AcsI	RAATTY	1 cut(s)	55
AcuI	CTGAAG	1 cut(s)	426
AfaI	GTAC	2 cut(s)	428, 667
AfiI	CCNNNNNNNGG	4 cut(s)	185, 271, 408, 436
AgsI	TTSAA	3 cut(s)	89, 416, 962
AluBI	AGCT	6 cut(s)	78, 322, 616, 634, 865, 916
AluI	AGCT	6 cut(s)	78, 322, 616, 634, 865, 916
Alw21I	GWGCWC	1 cut(s)	867
Alw26I	GTCTC	5 cut(s)	196, 434, 686, 810, 851
Aor13HI	TCCGGA	1 cut(s)	436
AoxI	GGCC	4 cut(s)	176, 372, 591, 923
ApeKI	GCWGC	1 cut(s)	578
ApoI	RAATTY	1 cut(s)	55
AsuC2I	CCSGG	1 cut(s)	431
BaeGI	GKGCMC	2 cut(s)	165, 480
BalI	TGGCCA	1 cut(s)	374
BanI	GGYRCC	3 cut(s)	475, 499, 643
BanII	GRGCYC	1 cut(s)	867
BauI	CACGAG	1 cut(s)	841
Bbv12I	GWGCWC	1 cut(s)	867
BbvCI	CCTCAGC	1 cut(s)	323
BbvI	GCAGC	1 cut(s)	565
BccI	CCATC	6 cut(s)	272, 364, 485, 530, 830, 934
BceAI	ACGGC	1 cut(s)	938
BcnI	CCSGG	1 cut(s)	431
BcoDI	GTCTC	5 cut(s)	196, 434, 686, 810, 851
BfaI	CTAG	1 cut(s)	930
BisI	GCNGC	1 cut(s)	579
BlsI	GCNGC	1 cut(s)	580
BmcAI	AGTACT	1 cut(s)	667
Bme1390I	CCNGG	1 cut(s)	431
BmiI	GGNNCC	4 cut(s)	435, 477, 501, 645
BmrFI	CCNGG	1 cut(s)	431
BmrI	ACTGGG	1 cut(s)	260
BmsI	GCATC	2 cut(s)	214, 889
BmuI	ACTGGG	1 cut(s)	260
BpmI	CTGGAG	2 cut(s)	840, 852
Bpu10I	CCTNAGC	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	431
BsaI	GGTCTC	1 cut(s)	810
BsaJI	CCNNGG	2 cut(s)	606, 730
BsaWI	WCCGGW	1 cut(s)	436
BsaXI	ACNNNNNCTCC	2 cut(s)	431, 461
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 271, 408, 436
Bse118I	RCCGGY	1 cut(s)	181
Bse1I	ACTGG	5 cut(s)	60, 266, 528, 673, 944
BseAI	TCCGGA	1 cut(s)	436
BseDI	CCNNGG	2 cut(s)	606, 730
BseLI	CCNNNNNNNGG	4 cut(s)	185, 271, 408, 436
BseMII	CTCAG	6 cut(s)	24, 314, 507, 596, 731, 846
BseNI	ACTGG	5 cut(s)	60, 266, 528, 673, 944
BseRI	GAGGAG	1 cut(s)	813
BseSI	GKGCMC	2 cut(s)	165, 480
BseXI	GCAGC	1 cut(s)	565
BseYI	CCCAGC	2 cut(s)	164, 650
BshFI	GGCC	4 cut(s)	178, 374, 593, 925
BshNI	GGYRCC	3 cut(s)	475, 499, 643
BsiHKAI	GWGCWC	1 cut(s)	867
BsiSI	CCGG	4 cut(s)	182, 195, 430, 437
BslI	CCNNNNNNNGG	4 cut(s)	185, 271, 408, 436
BsmAI	GTCTC	5 cut(s)	196, 434, 686, 810, 851
BsnI	GGCC	4 cut(s)	178, 374, 593, 925
Bso31I	GGTCTC	1 cut(s)	810
Bsp1286I	GDGCHC	3 cut(s)	165, 480, 867
Bsp13I	TCCGGA	1 cut(s)	436
Bsp143I	GATC	1 cut(s)	202
Bsp19I	CCATGG	1 cut(s)	730
BspACI	CCGC	2 cut(s)	185, 681
BspANI	GGCC	4 cut(s)	178, 374, 593, 925
BspCNI	CTCAG	6 cut(s)	25, 315, 508, 595, 730, 847
BspEI	TCCGGA	1 cut(s)	436
BspLI	GGNNCC	4 cut(s)	435, 477, 501, 645
BspT107I	GGYRCC	3 cut(s)	475, 499, 643
BspTNI	GGTCTC	1 cut(s)	810
BsrFI	RCCGGY	1 cut(s)	181
BsrI	ACTGG	5 cut(s)	60, 266, 528, 673, 944
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	2 cut(s)	606, 730
BssMI	GATC	1 cut(s)	202
BssSI	CACGAG	1 cut(s)	841
BssT1I	CCWWGG	1 cut(s)	730
Bst2BI	CACGAG	1 cut(s)	841
Bst4CI	ACNGT	3 cut(s)	564, 700, 975
BstC8I	GCNNGC	5 cut(s)	6, 636, 648, 867, 918
BstDEI	CTNAG	7 cut(s)	33, 323, 516, 582, 717, 794, 855
BstDSI	CCRYGG	2 cut(s)	606, 730
BstKTI	GATC	1 cut(s)	205
BstMAI	GTCTC	5 cut(s)	196, 434, 686, 810, 851
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	2 cut(s)	678, 922
BstSCI	CCNGG	1 cut(s)	429
BstSLI	GKGCMC	2 cut(s)	165, 480
BstV1I	GCAGC	1 cut(s)	565
BsuRI	GGCC	4 cut(s)	178, 374, 593, 925
BtgI	CCRYGG	2 cut(s)	606, 730
BtgZI	GCGATG	2 cut(s)	213, 237
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	5 cut(s)	6, 636, 648, 867, 918
Cfr10I	RCCGGY	1 cut(s)	181
Csp6I	GTAC	2 cut(s)	427, 666
CviAII	CATG	6 cut(s)	105, 151, 359, 731, 895, 938
CviQI	GTAC	2 cut(s)	427, 666
DdeI	CTNAG	7 cut(s)	33, 323, 516, 582, 717, 794, 855
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
DrdI	GACNNNNNNGTC	1 cut(s)	448
DseDI	GACNNNNNNGTC	1 cut(s)	448
EaeI	YGGCCR	2 cut(s)	372, 923
Ecl136II	GAGCTC	1 cut(s)	865
Eco130I	CCWWGG	1 cut(s)	730
Eco147I	AGGCCT	1 cut(s)	593
Eco24I	GRGCYC	1 cut(s)	867
Eco31I	GGTCTC	1 cut(s)	810
Eco53kI	GAGCTC	1 cut(s)	865
Eco57I	CTGAAG	1 cut(s)	426
EcoICRI	GAGCTC	1 cut(s)	865
EcoT14I	CCWWGG	1 cut(s)	730
EcoT38I	GRGCYC	1 cut(s)	867
ErhI	CCWWGG	1 cut(s)	730
FaeI	CATG	6 cut(s)	108, 154, 362, 734, 898, 941
FatI	CATG	6 cut(s)	104, 150, 358, 730, 894, 937
FauI	CCCGC	1 cut(s)	178
FauNDI	CATATG	1 cut(s)	811
Fnu4HI	GCNGC	1 cut(s)	579
FriOI	GRGCYC	1 cut(s)	867
Fsp4HI	GCNGC	1 cut(s)	579
FspBI	CTAG	1 cut(s)	930
GluI	GCNGC	1 cut(s)	579
GsaI	CCCAGC	2 cut(s)	168, 654
GsuI	CTGGAG	2 cut(s)	840, 852
HaeIII	GGCC	4 cut(s)	178, 374, 593, 925
HapII	CCGG	4 cut(s)	182, 195, 430, 437
Hin1II	CATG	6 cut(s)	108, 154, 362, 734, 898, 941
HindIII	AAGCTT	2 cut(s)	632, 914
HinfI	GANTC	5 cut(s)	189, 398, 442, 602, 788
HpaII	CCGG	4 cut(s)	182, 195, 430, 437
Hpy166II	GTNNAC	2 cut(s)	50, 686
Hpy188I	TCNGA	4 cut(s)	34, 238, 558, 585
Hpy188III	TCNNGA	4 cut(s)	437, 819, 831, 910
Hpy8I	GTNNAC	2 cut(s)	50, 686
HpyAV	CCTTC	6 cut(s)	30, 401, 410, 466, 583, 616
HpyCH4III	ACNGT	3 cut(s)	564, 700, 975
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	4 cut(s)	290, 638, 875, 920
HpyF10VI	GCNNNNNNNGC	2 cut(s)	678, 922
HpyF3I	CTNAG	7 cut(s)	33, 323, 516, 582, 717, 794, 855
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	6 cut(s)	108, 154, 362, 734, 898, 941
Kpn2I	TCCGGA	1 cut(s)	436
Kzo9I	GATC	1 cut(s)	202
LmnI	GCTCC	3 cut(s)	463, 613, 625
Lsp1109I	GCAGC	1 cut(s)	565
LweI	GCATC	2 cut(s)	214, 889
MaeI	CTAG	1 cut(s)	930
MaeII	ACGT	1 cut(s)	97
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	3 cut(s)	197, 325, 328
MfeI	CAATTG	1 cut(s)	750
MhlI	GDGCHC	3 cut(s)	165, 480, 867
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	2 cut(s)	55, 750
MluNI	TGGCCA	1 cut(s)	374
MlyI	GAGTC	4 cut(s)	198, 436, 596, 782
MmeI	TCCRAC	3 cut(s)	441, 581, 928
MnlI	CCTC	6 cut(s)	265, 318, 523, 791, 794, 837
Mox20I	TGGCCA	1 cut(s)	374
MroI	TCCGGA	1 cut(s)	436
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	1 cut(s)	384
Msp20I	TGGCCA	1 cut(s)	374
MspI	CCGG	4 cut(s)	182, 195, 430, 437
MspR9I	CCNGG	1 cut(s)	431
MunI	CAATTG	1 cut(s)	750
MwoI	GCNNNNNNNGC	2 cut(s)	678, 922
NciI	CCSGG	1 cut(s)	431
NcoI	CCATGG	1 cut(s)	730
NdeI	CATATG	1 cut(s)	811
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	6 cut(s)	108, 154, 362, 734, 898, 941
NlaIV	GGNNCC	4 cut(s)	435, 477, 501, 645
PceI	AGGCCT	1 cut(s)	593
PfeI	GAWTC	1 cut(s)	398
PflFI	GACNNNGTC	1 cut(s)	445
PkrI	GCNGC	1 cut(s)	580
PleI	GAGTC	4 cut(s)	197, 436, 596, 782
PpsI	GAGTC	4 cut(s)	197, 436, 596, 782
Psp124BI	GAGCTC	1 cut(s)	867
PspFI	CCCAGC	2 cut(s)	164, 650
PspN4I	GGNNCC	4 cut(s)	435, 477, 501, 645
PsyI	GACNNNGTC	1 cut(s)	445
RsaI	GTAC	2 cut(s)	428, 667
RsaNI	GTAC	2 cut(s)	427, 666
SacI	GAGCTC	1 cut(s)	867
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	1 cut(s)	579
Sau3AI	GATC	1 cut(s)	202
ScaI	AGTACT	1 cut(s)	667
SchI	GAGTC	4 cut(s)	198, 436, 596, 782
ScrFI	CCNGG	1 cut(s)	431
SduI	GDGCHC	3 cut(s)	165, 480, 867
SfaNI	GCATC	2 cut(s)	214, 889
SgrAI	CRCCGGYG	1 cut(s)	181
Sse9I	AATT	2 cut(s)	55, 750
SseBI	AGGCCT	1 cut(s)	593
SsiI	CCGC	2 cut(s)	185, 681
SspMI	CTAG	1 cut(s)	930
SstI	GAGCTC	1 cut(s)	867
StuI	AGGCCT	1 cut(s)	593
StyD4I	CCNGG	1 cut(s)	429
StyI	CCWWGG	1 cut(s)	730
TaaI	ACNGT	3 cut(s)	564, 700, 975
TaiI	ACGT	1 cut(s)	100
TasI	AATT	2 cut(s)	55, 750
TatI	WGTACW	1 cut(s)	665
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	1 cut(s)	409
TseI	GCWGC	1 cut(s)	578
TspDTI	ATGAA	6 cut(s)	93, 139, 322, 485, 602, 926
TspGWI	ACGGA	1 cut(s)	900
TspRI	CASTG	1 cut(s)	409
Tth111I	GACNNNGTC	1 cut(s)	445
XapI	RAATTY	1 cut(s)	55
XspI	CTAG	1 cut(s)	930
ZrmI	AGTACT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.