Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001703

Physical Location & Seq

Genomic Coordinates Forward (+)

8598425 .. 8599847

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g12050.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGGGAAAGGCGGGGGCTGCTTCCCAAGCAAGAAGAAAGTCCCCTCCGGTGACAGAAATCCTGACGCCGCCAGCCATGCCTCCGCGGCGCCGATTTCCACTGATGGCAATCCGAATTCCGCTGCCAAGCCAAATGACGACGTTGTCGTCGCCCAGTCGCAACCGAATCCCGACCGGGTTCCGAAATTGAGGATATTCATAGTGTTCTACTCGATGTACGGGCACGTGGAGGGGCTGGCGCGGCGGATGAAGAAGGGGGTTGACGACGTGGAGGGGGCGGAGGGGGTGCTGTACCGGGTGCCCGAGACCCTGCCGGCTGAGGTTTTGGAGGCTATGAAGGCGCCGCCGAAGGACCCTGAAATTCCAGAGATTTCTGCGGCGGAGTTGGTGGCTGCGGACGGGGTTTTGTTTGGGTTTCCGACGAGGTTCGGGAGCATGGCGGCGCAGATGAAGGCGTTTTTCGACTCGACGGGGCAGCTGTGGAAGGAGCAGAGCCTGGCTGGGAAGCCTGGTGGGTTTTTTGTCAGTACCGGGACTCAAGGCGGCGGCCAAGAAACCACTCTATGGACGGCAATCACCCAGTTAGCACACCATGGAATGCTGTTTGTTCCTGTTGGGTATACTTTTGGAGCTGGCATGTTTAAGATGGACTCTGTACGAGGGGGTTCTCCATATGGTGCCGGTGTCTTTGCTGGCGACGGCACAAGAGGGCCAAGTGAAACTGAGTTGGCCCTTGCGGAGCATCAGGGGAAGTATATGGCATCAGTAGTCAAGAAGCTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003955 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0010181 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044464 GO:0048037 GO:0050662 GO:0055114 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

262

Amino Acids

27.41

Weight (kDa)

6.53

Isoelectric Point (pI)

36.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36750
fragaria_vesca	FvH4_1g13950 FvH4_2g08230 FvH4_2g08230 FvH4_2g08230
malus_domestica	MD02G1152700.v1.1 MD05G1334200.v1.1 MD10G1081100.v1.1 MD10G1309100.v1.1
prunus_persica	Prupe.4G031000_v2.0.a1 Prupe.4G031000_v2.0.a1 Prupe.7G149400_v2.0.a1 Prupe.8G102400_v2.0.a1
pyrus_communis	pycom02g12050 pycom05g30590 pycom10g06420 pycom10g26050 pycom15g23270
rosa_chinensis	RchiOBHm_Chr2g0102261 RchiOBHm_Chr6g0263041 RchiOBHm_Chr6g0263101
rosa_laevigata	RLG00000014375 RLG00000014383 RLG00000017140
rosa_multiflora	Rmu_co8453355.1_g000001 Rmu_sc0002146.1_g000009 Rmu_sc0002479.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140620 Rroxscaffold_7G00204680 Rroxscaffold_7G00204780
rosa_rugosa	Rorug02G0106100 Rorug02G0106100 Rorug06G0002900 Rorug06G0003500
rosa_samantha	Rh2AG154000 Rh2BG160000 Rh2CG159600 Rh2DG159600 Rh6AG122100 Rh6BG115200 Rh6BG116700 Rh6CG113900 Rh6CG115200 Rh6DG103000 Rh6DG103800
rosa_wichuraiana	Rw2G012040 Rw6G010470 Rw6G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	143, 146
AccB1I	GGYRCC	4 cut(s)	88, 298, 340, 677
AccB7I	CCANNNNNTGG	1 cut(s)	564
AccI	GTMKAC	1 cut(s)	620
AccII	CGCG	2 cut(s)	86, 241
AcoI	YGGCCR	1 cut(s)	547
AcsI	RAATTY	2 cut(s)	115, 360
AcvI	CACGTG	1 cut(s)	226
AcyI	GRCGYC	3 cut(s)	66, 89, 341
AfaI	GTAC	4 cut(s)	218, 293, 529, 657
AfiI	CCNNNNNNNGG	1 cut(s)	564
AjiI	CACGTC	1 cut(s)	268
AjnI	CCWGG	2 cut(s)	495, 508
AluBI	AGCT	3 cut(s)	478, 632, 778
AluI	AGCT	3 cut(s)	478, 632, 778
Alw26I	GTCTC	1 cut(s)	299
AlwNI	CAGNNNCTG	1 cut(s)	496
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	3 cut(s)	547, 710, 729
ApeKI	GCWGC	4 cut(s)	18, 122, 392, 475
ApoI	RAATTY	2 cut(s)	115, 360
AspLEI	GCGC	4 cut(s)	91, 241, 343, 445
AspS9I	GGNCC	3 cut(s)	352, 710, 730
AsuC2I	CCSGG	3 cut(s)	176, 296, 532
AsuHPI	GGTGA	2 cut(s)	62, 568
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	352
BaeGI	GKGCMC	2 cut(s)	225, 303
BanI	GGYRCC	4 cut(s)	88, 298, 340, 677
BbrPI	CACGTG	1 cut(s)	226
BbvCI	CCTCAGC	1 cut(s)	318
BbvI	GCAGC	4 cut(s)	5, 109, 379, 487
BccI	CCATC	2 cut(s)	98, 640
BceAI	ACGGC	2 cut(s)	585, 715
BciT130I	CCWGG	2 cut(s)	497, 510
BcnI	CCSGG	3 cut(s)	176, 296, 532
BcoDI	GTCTC	1 cut(s)	299
BfoI	RGCGCY	2 cut(s)	92, 344
BglI	GCCNNNNNGGC	1 cut(s)	86
Bme1390I	CCNGG	5 cut(s)	176, 296, 497, 510, 532
Bme18I	GGWCC	1 cut(s)	352
BmeT110I	CYCGRG	1 cut(s)	302
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	3 cut(s)	352, 710, 730
BmiI	GGNNCC	6 cut(s)	90, 180, 300, 342, 354, 679
BmrFI	CCNGG	5 cut(s)	176, 296, 497, 510, 532
BmrI	ACTGGG	2 cut(s)	148, 574
BmsI	GCATC	2 cut(s)	751, 770
BmuI	ACTGGG	2 cut(s)	148, 574
Bpu10I	CCTNAGC	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	522
BpuMI	CCSGG	3 cut(s)	176, 296, 532
BsaAI	YACGTR	1 cut(s)	226
BsaBI	GATNNNNATC	1 cut(s)	108
BsaHI	GRCGYC	3 cut(s)	66, 89, 341
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	2 cut(s)	84, 592
BsaWI	WCCGGW	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	1 cut(s)	564
Bse118I	RCCGGY	2 cut(s)	313, 680
Bse1I	ACTGG	2 cut(s)	154, 580
Bse8I	GATNNNNATC	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	497, 510
BseDI	CCNNGG	2 cut(s)	84, 592
BseGI	GGATG	1 cut(s)	252
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	564
BseMII	CTCAG	2 cut(s)	309, 714
BseNI	ACTGG	2 cut(s)	154, 580
BseSI	GKGCMC	2 cut(s)	225, 303
BseXI	GCAGC	4 cut(s)	5, 109, 379, 487
BseYI	CCCAGC	1 cut(s)	500
Bsh1236I	CGCG	2 cut(s)	86, 241
Bsh1285I	CGRYCG	1 cut(s)	175
BshFI	GGCC	3 cut(s)	549, 712, 731
BshNI	GGYRCC	4 cut(s)	88, 298, 340, 677
BsiEI	CGRYCG	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	6 cut(s)	48, 175, 295, 314, 531, 681
BslFI	GGGAC	2 cut(s)	26, 547
BslI	CCNNNNNNNGG	1 cut(s)	564
BsmAI	GTCTC	1 cut(s)	299
BsmFI	GGGAC	2 cut(s)	26, 547
BsmI	GAATGC	1 cut(s)	603
BsnI	GGCC	3 cut(s)	549, 712, 731
Bso31I	GGTCTC	1 cut(s)	299
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	2 cut(s)	225, 303
Bsp19I	CCATGG	1 cut(s)	592
BspANI	GGCC	3 cut(s)	549, 712, 731
BspCNI	CTCAG	2 cut(s)	310, 715
BspFNI	CGCG	2 cut(s)	86, 241
BspLI	GGNNCC	6 cut(s)	90, 180, 300, 342, 354, 679
BspT107I	GGYRCC	4 cut(s)	88, 298, 340, 677
BspTNI	GGTCTC	1 cut(s)	299
BsrFI	RCCGGY	2 cut(s)	313, 680
BsrI	ACTGG	2 cut(s)	154, 580
BssAI	RCCGGY	2 cut(s)	313, 680
BssECI	CCNNGG	2 cut(s)	84, 592
BssNAI	GTATAC	1 cut(s)	621
BssNI	GRCGYC	3 cut(s)	66, 89, 341
BssT1I	CCWWGG	1 cut(s)	592
Bst1107I	GTATAC	1 cut(s)	621
Bst2UI	CCWGG	2 cut(s)	497, 510
BstACI	GRCGYC	3 cut(s)	66, 89, 341
BstBAI	YACGTR	1 cut(s)	226
BstC8I	GCNNGC	6 cut(s)	73, 237, 315, 634, 694, 780
BstDEI	CTNAG	2 cut(s)	318, 723
BstDSI	CCRYGG	2 cut(s)	84, 592
BstF5I	GGATG	1 cut(s)	252
BstFNI	CGCG	2 cut(s)	86, 241
BstH2I	RGCGCY	2 cut(s)	92, 344
BstHHI	GCGC	4 cut(s)	91, 241, 343, 445
BstMAI	GTCTC	1 cut(s)	299
BstMCI	CGRYCG	1 cut(s)	175
BstMWI	GCNNNNNNNGC	6 cut(s)	18, 27, 77, 86, 241, 338
BstNI	CCWGG	2 cut(s)	497, 510
BstNSI	RCATGY	1 cut(s)	640
BstSCI	CCNGG	5 cut(s)	174, 294, 495, 508, 530
BstSLI	GKGCMC	2 cut(s)	225, 303
BstUI	CGCG	2 cut(s)	86, 241
BstV1I	GCAGC	4 cut(s)	5, 109, 379, 487
BstZ17I	GTATAC	1 cut(s)	621
BsuRI	GGCC	3 cut(s)	549, 712, 731
BtgI	CCRYGG	2 cut(s)	84, 592
BtrI	CACGTC	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	6 cut(s)	73, 237, 315, 634, 694, 780
CaiI	CAGNNNCTG	1 cut(s)	496
CfoI	GCGC	4 cut(s)	91, 241, 343, 445
Cfr10I	RCCGGY	2 cut(s)	313, 680
Cfr13I	GGNCC	3 cut(s)	352, 710, 730
Cfr42I	CCGCGG	1 cut(s)	87
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	4 cut(s)	217, 292, 528, 656
CviAII	CATG	4 cut(s)	77, 436, 593, 637
CviQI	GTAC	4 cut(s)	217, 292, 528, 656
DdeI	CTNAG	2 cut(s)	318, 723
DinI	GGCGCC	2 cut(s)	90, 342
DrdI	GACNNNNNNGTC	2 cut(s)	143, 146
DseDI	GACNNNNNNGTC	2 cut(s)	143, 146
EaeI	YGGCCR	1 cut(s)	547
EciI	GGCGGA	3 cut(s)	259, 293, 395
Eco130I	CCWWGG	1 cut(s)	592
Eco31I	GGTCTC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	352
Eco72I	CACGTG	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	302
EcoO109I	RGGNCCY	1 cut(s)	352
EcoRI	GAATTC	1 cut(s)	115
EcoRII	CCWGG	2 cut(s)	495, 508
EcoT14I	CCWWGG	1 cut(s)	592
EgeI	GGCGCC	2 cut(s)	90, 342
EheI	GGCGCC	2 cut(s)	90, 342
ErhI	CCWWGG	1 cut(s)	592
FaeI	CATG	4 cut(s)	80, 439, 596, 640
FaqI	GGGAC	2 cut(s)	26, 547
FatI	CATG	4 cut(s)	76, 435, 592, 636
FauI	CCCGC	1 cut(s)	5
FauNDI	CATATG	1 cut(s)	673
FblI	GTMKAC	1 cut(s)	620
FokI	GGATG	1 cut(s)	259
GlaI	GCGC	4 cut(s)	90, 240, 342, 444
GsaI	CCCAGC	1 cut(s)	504
HaeII	RGCGCY	2 cut(s)	92, 344
HaeIII	GGCC	3 cut(s)	549, 712, 731
HapII	CCGG	6 cut(s)	48, 175, 295, 314, 531, 681
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	4 cut(s)	91, 241, 343, 445
Hin1I	GRCGYC	3 cut(s)	66, 89, 341
Hin1II	CATG	4 cut(s)	80, 439, 596, 640
Hin6I	GCGC	4 cut(s)	89, 239, 341, 443
HinP1I	GCGC	4 cut(s)	89, 239, 341, 443
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HindIII	AAGCTT	1 cut(s)	776
HinfI	GANTC	4 cut(s)	166, 464, 535, 650
HpaII	CCGG	6 cut(s)	48, 175, 295, 314, 531, 681
HphI	GGTGA	2 cut(s)	62, 568
Hpy166II	GTNNAC	2 cut(s)	262, 621
Hpy188I	TCNGA	3 cut(s)	114, 183, 420
Hpy188III	TCNNGA	5 cut(s)	62, 170, 365, 430, 772
Hpy8I	GTNNAC	2 cut(s)	262, 621
Hpy99I	CGWCG	6 cut(s)	143, 152, 269, 424, 472, 701
HpyAV	CCTTC	5 cut(s)	247, 331, 343, 445, 478
HpyCH4IV	ACGT	3 cut(s)	141, 225, 267
HpyCH4V	TGCA	1 cut(s)	782
HpyF10VI	GCNNNNNNNGC	6 cut(s)	18, 27, 77, 86, 241, 338
HpyF3I	CTNAG	2 cut(s)	318, 723
HpySE526I	ACGT	3 cut(s)	141, 225, 267
Hsp92I	GRCGYC	3 cut(s)	66, 89, 341
Hsp92II	CATG	4 cut(s)	80, 439, 596, 640
HspAI	GCGC	4 cut(s)	89, 239, 341, 443
KasI	GGCGCC	2 cut(s)	88, 340
KroI	GCCGGC	1 cut(s)	313
KroNI	GCCGGC	1 cut(s)	315
KspI	CCGCGG	1 cut(s)	87
LmnI	GCTCC	4 cut(s)	432, 487, 629, 739
Lsp1109I	GCAGC	4 cut(s)	5, 109, 379, 487
LweI	GCATC	2 cut(s)	751, 770
MaeII	ACGT	3 cut(s)	141, 225, 267
MaeIII	GTNAC	1 cut(s)	50
MboII	GAAGA	2 cut(s)	46, 262
MhlI	GDGCHC	2 cut(s)	225, 303
MluCI	AATT	3 cut(s)	115, 185, 360
Mly113I	GGCGCC	2 cut(s)	89, 341
MlyI	GAGTC	3 cut(s)	458, 529, 644
MmeI	TCCRAC	1 cut(s)	443
MroNI	GCCGGC	1 cut(s)	313
MseI	TTAA	1 cut(s)	642
MspA1I	CMGCKG	3 cut(s)	86, 122, 478
MspI	CCGG	6 cut(s)	48, 175, 295, 314, 531, 681
MspR9I	CCNGG	5 cut(s)	176, 296, 497, 510, 532
Mva1269I	GAATGC	1 cut(s)	603
MvaI	CCWGG	2 cut(s)	497, 510
MvnI	CGCG	2 cut(s)	86, 241
MwoI	GCNNNNNNNGC	6 cut(s)	18, 27, 77, 86, 241, 338
NaeI	GCCGGC	1 cut(s)	315
NarI	GGCGCC	2 cut(s)	89, 341
NciI	CCSGG	3 cut(s)	176, 296, 532
NcoI	CCATGG	1 cut(s)	592
NdeI	CATATG	1 cut(s)	673
NgoMIV	GCCGGC	1 cut(s)	313
NlaIII	CATG	4 cut(s)	80, 439, 596, 640
NlaIV	GGNNCC	6 cut(s)	90, 180, 300, 342, 354, 679
NmuCI	GTSAC	1 cut(s)	50
NspI	RCATGY	1 cut(s)	640
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PctI	GAATGC	1 cut(s)	603
PdiI	GCCGGC	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	166
PflFI	GACNNNGTC	1 cut(s)	143
PflMI	CCANNNNNTGG	1 cut(s)	564
PleI	GAGTC	3 cut(s)	458, 529, 644
PluTI	GGCGCC	2 cut(s)	92, 344
PmaCI	CACGTG	1 cut(s)	226
PmlI	CACGTG	1 cut(s)	226
PpsI	GAGTC	3 cut(s)	458, 529, 644
Ppu21I	YACGTR	1 cut(s)	226
PpuMI	RGGWCCY	1 cut(s)	352
Psp5II	RGGWCCY	1 cut(s)	352
Psp6I	CCWGG	2 cut(s)	495, 508
PspCI	CACGTG	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	500
PspGI	CCWGG	2 cut(s)	495, 508
PspN4I	GGNNCC	6 cut(s)	90, 180, 300, 342, 354, 679
PspPI	GGNCC	3 cut(s)	352, 710, 730
PspPPI	RGGWCCY	1 cut(s)	352
PstNI	CAGNNNCTG	1 cut(s)	496
PsyI	GACNNNGTC	1 cut(s)	143
PvuII	CAGCTG	1 cut(s)	478
RsaI	GTAC	4 cut(s)	218, 293, 529, 657
RsaNI	GTAC	4 cut(s)	217, 292, 528, 656
SacII	CCGCGG	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	642
Sau96I	GGNCC	3 cut(s)	352, 710, 730
SchI	GAGTC	3 cut(s)	458, 529, 644
ScrFI	CCNGG	5 cut(s)	176, 296, 497, 510, 532
SduI	GDGCHC	2 cut(s)	225, 303
SetI	ASST	8 cut(s)	144, 228, 270, 324, 428, 480, 634, 780
SfaNI	GCATC	2 cut(s)	751, 770
SfoI	GGCGCC	2 cut(s)	90, 342
Sfr303I	CCGCGG	1 cut(s)	87
SgrBI	CCGCGG	1 cut(s)	87
SinI	GGWCC	1 cut(s)	352
SmlI	CTYRAG	1 cut(s)	537
SmoI	CTYRAG	1 cut(s)	537
Sse9I	AATT	3 cut(s)	115, 185, 360
SspDI	GGCGCC	2 cut(s)	88, 340
StyD4I	CCNGG	5 cut(s)	174, 294, 495, 508, 530
StyI	CCWWGG	1 cut(s)	592
TaiI	ACGT	3 cut(s)	144, 228, 270
TaqI	TCGA	3 cut(s)	212, 462, 467
TasI	AATT	3 cut(s)	115, 185, 360
TauI	GCSGC	8 cut(s)	71, 89, 244, 346, 380, 443, 546, 549
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	1 cut(s)	642
Tru9I	TTAA	1 cut(s)	642
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	4 cut(s)	18, 122, 392, 475
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	4 cut(s)	187, 263, 350, 464
TspRI	CASTG	1 cut(s)	106
Tth111I	GACNNNGTC	1 cut(s)	143
Van91I	CCANNNNNTGG	1 cut(s)	564
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	2 cut(s)	115, 360
XceI	RCATGY	1 cut(s)	640
XmiI	GTMKAC	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.