Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8453355.1

Orthogroup ID

OG0001703

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1690

Gene Structure 1690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8453355.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 422 bp

atgaaagtgcccaagaaggatgatcatggggtgcctgtgatagtgcctgagagactggtggaggctgatggggtgttgttcgggtttcctacccggtatgggtcaatggctgctcagatgaaggcgtttttcgactccacgggggagctttggagggagcagaagcttgcaggggtgcctgctgggttctttgtgagtactggcacacagggtggtggacaggagactaatgcttggacagccattactcagttagcacaccatggaatgatatatgttccaattggctacacctttggtgctggaatgttccaaatggactcccttagaggagggtctccatatggttctggggttctttctggagatggcacaagggcaccaactgagacagagctcgctcttgcagagcatcacggaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

140

Amino Acids

14.86

Weight (kDa)

5.65

Isoelectric Point (pI)

27.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36750
fragaria_vesca	FvH4_1g13950 FvH4_2g08230 FvH4_2g08230 FvH4_2g08230
malus_domestica	MD02G1152700.v1.1 MD05G1334200.v1.1 MD10G1081100.v1.1 MD10G1309100.v1.1
prunus_persica	Prupe.4G031000_v2.0.a1 Prupe.4G031000_v2.0.a1 Prupe.7G149400_v2.0.a1 Prupe.8G102400_v2.0.a1
pyrus_communis	pycom02g12050 pycom05g30590 pycom10g06420 pycom10g26050 pycom15g23270
rosa_chinensis	RchiOBHm_Chr2g0102261 RchiOBHm_Chr6g0263041 RchiOBHm_Chr6g0263101
rosa_laevigata	RLG00000014375 RLG00000014383 RLG00000017140
rosa_multiflora	Rmu_co8453355.1_g000001 Rmu_sc0002146.1_g000009 Rmu_sc0002479.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140620 Rroxscaffold_7G00204680 Rroxscaffold_7G00204780
rosa_rugosa	Rorug02G0106100 Rorug02G0106100 Rorug06G0002900 Rorug06G0003500
rosa_samantha	Rh2AG154000 Rh2BG160000 Rh2CG159600 Rh2DG159600 Rh6AG122100 Rh6BG115200 Rh6BG116700 Rh6CG113900 Rh6CG115200 Rh6DG103000 Rh6DG103800
rosa_wichuraiana	Rw2G012040 Rw6G010470 Rw6G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	31, 175, 379
AdeI	CACNNNGTG	1 cut(s)	212
AfaI	GTAC	1 cut(s)	199
AfiI	CCNNNNNNNGG	1 cut(s)	99
AluBI	AGCT	3 cut(s)	148, 166, 397
AluI	AGCT	3 cut(s)	148, 166, 397
Alw21I	GWGCWC	1 cut(s)	399
Alw26I	GTCTC	4 cut(s)	46, 218, 342, 383
ApeKI	GCWGC	1 cut(s)	110
AsuC2I	CCSGG	1 cut(s)	94
BaeGI	GKGCMC	2 cut(s)	12, 382
BanI	GGYRCC	3 cut(s)	31, 175, 379
BanII	GRGCYC	1 cut(s)	399
Bbv12I	GWGCWC	1 cut(s)	399
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	2 cut(s)	62, 362
BclI	TGATCA	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	4 cut(s)	46, 218, 342, 383
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
BmcAI	AGTACT	1 cut(s)	199
Bme1390I	CCNGG	1 cut(s)	94
BmiI	GGNNCC	3 cut(s)	33, 177, 381
BmrFI	CCNGG	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	384
BpuMI	CCSGG	1 cut(s)	94
BsaI	GGTCTC	1 cut(s)	342
BsaJI	CCNNGG	2 cut(s)	138, 262
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse1I	ACTGG	2 cut(s)	60, 205
BseDI	CCNNGG	2 cut(s)	138, 262
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMII	CTCAG	4 cut(s)	39, 128, 263, 378
BseNI	ACTGG	2 cut(s)	60, 205
BseRI	GAGGAG	1 cut(s)	345
BseSI	GKGCMC	2 cut(s)	12, 382
BseXI	GCAGC	1 cut(s)	97
BseYI	CCCAGC	1 cut(s)	182
BshNI	GGYRCC	3 cut(s)	31, 175, 379
BsiHKAI	GWGCWC	1 cut(s)	399
BsiSI	CCGG	1 cut(s)	94
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmAI	GTCTC	4 cut(s)	46, 218, 342, 383
Bso31I	GGTCTC	1 cut(s)	342
Bsp1286I	GDGCHC	3 cut(s)	12, 382, 399
Bsp143I	GATC	1 cut(s)	22
Bsp19I	CCATGG	1 cut(s)	262
BspCNI	CTCAG	4 cut(s)	40, 127, 262, 379
BspLI	GGNNCC	3 cut(s)	33, 177, 381
BspT107I	GGYRCC	3 cut(s)	31, 175, 379
BspTNI	GGTCTC	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	60, 205
BssECI	CCNNGG	2 cut(s)	138, 262
BssMI	GATC	1 cut(s)	22
BssT1I	CCWWGG	1 cut(s)	262
BstC8I	GCNNGC	3 cut(s)	168, 180, 399
BstDEI	CTNAG	5 cut(s)	48, 114, 249, 326, 387
BstDSI	CCRYGG	2 cut(s)	138, 262
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	1 cut(s)	25
BstMAI	GTCTC	4 cut(s)	46, 218, 342, 383
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	92
BstSLI	GKGCMC	2 cut(s)	12, 382
BstV1I	GCAGC	1 cut(s)	97
BtgI	CCRYGG	2 cut(s)	138, 262
BtsCI	GGATG	1 cut(s)	25
Cac8I	GCNNGC	3 cut(s)	168, 180, 399
Csp6I	GTAC	1 cut(s)	198
CviAII	CATG	2 cut(s)	26, 263
CviJI	RGCY	7 cut(s)	65, 110, 148, 166, 242, 288, 397
CviKI_1	RGCY	7 cut(s)	65, 110, 148, 166, 242, 288, 397
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	5 cut(s)	48, 114, 249, 326, 387
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
DraIII	CACNNNGTG	1 cut(s)	212
Ecl136II	GAGCTC	1 cut(s)	397
Eco130I	CCWWGG	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	399
Eco31I	GGTCTC	1 cut(s)	342
Eco53kI	GAGCTC	1 cut(s)	397
EcoICRI	GAGCTC	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	2 cut(s)	29, 266
FaiI	YATR	7 cut(s)	27, 99, 264, 274, 276, 343, 345
FatI	CATG	2 cut(s)	25, 262
FauNDI	CATATG	1 cut(s)	343
FbaI	TGATCA	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	111
GsaI	CCCAGC	1 cut(s)	186
GsuI	CTGGAG	1 cut(s)	384
HapII	CCGG	1 cut(s)	94
Hin1II	CATG	2 cut(s)	29, 266
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	2 cut(s)	134, 320
HpaII	CCGG	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	1 cut(s)	117
Hpy188III	TCNNGA	1 cut(s)	363
Hpy8I	GTNNAC	1 cut(s)	218
HpyAV	CCTTC	2 cut(s)	10, 115
HpyCH4V	TGCA	2 cut(s)	170, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	5 cut(s)	48, 114, 249, 326, 387
Hsp92II	CATG	2 cut(s)	29, 266
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	22
LmnI	GCTCC	2 cut(s)	145, 157
Lsp1109I	GCAGC	1 cut(s)	97
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MfeI	CAATTG	1 cut(s)	282
MhlI	GDGCHC	3 cut(s)	12, 382, 399
MluCI	AATT	1 cut(s)	282
MlyI	GAGTC	2 cut(s)	128, 314
MnlI	CCTC	4 cut(s)	55, 147, 323, 326
MspI	CCGG	1 cut(s)	94
MspR9I	CCNGG	1 cut(s)	94
MunI	CAATTG	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	239
NciI	CCSGG	1 cut(s)	94
NcoI	CCATGG	1 cut(s)	262
NdeI	CATATG	1 cut(s)	343
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	2 cut(s)	29, 266
NlaIV	GGNNCC	3 cut(s)	33, 177, 381
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	2 cut(s)	128, 314
PpsI	GAGTC	2 cut(s)	128, 314
Psp124BI	GAGCTC	1 cut(s)	399
PspFI	CCCAGC	1 cut(s)	182
PspN4I	GGNNCC	3 cut(s)	33, 177, 381
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
SacI	GAGCTC	1 cut(s)	399
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	1 cut(s)	22
ScaI	AGTACT	1 cut(s)	199
SchI	GAGTC	2 cut(s)	128, 314
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	3 cut(s)	12, 382, 399
SetI	ASST	4 cut(s)	150, 168, 296, 399
Sse9I	AATT	1 cut(s)	282
SstI	GAGCTC	1 cut(s)	399
StyD4I	CCNGG	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	262
TaqI	TCGA	1 cut(s)	132
TasI	AATT	1 cut(s)	282
TatI	WGTACW	1 cut(s)	197
TseI	GCWGC	1 cut(s)	110
TspDTI	ATGAA	2 cut(s)	17, 134
ZrmI	AGTACT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.