Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001703

Physical Location & Seq

Genomic Coordinates Forward (+)

39385368 .. 39389029

Gene Structure 3662 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1309100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCTACCAAAGTCTACATTGTGTACTATTCTATGTACGGACATGTTGCCAGGTTGGCTGAAGAGATACTAAAAGGAGTTCAATCTGTCGAAGGAGTAGAAGCCAAACTGTGGCAGGTACCAGAAACACTGCCAGCAGAAGTTCTTGGAAAAATGGGTGCACCACCAAAGAGTGAAGTGCCTGTAATTTCACCTGAGGAACTTGTGGAGGCTGATGGGATAATCTTCGGTTTCCCTACCAGATTTGGAATGATGGCTGCACAGTTTAAAGCATTTTTCGATTCAACTGGAGGCTTATGGAGAACTCAAGCACTTGCTGGCAAGCCCGCTGGAATTTTCTACAGCACTGGATCTCAAGGTGGTGGACAAGAGACTACCCCCTTGACGACCATTACACAGCTTGTTCACCACGGAATGCTCTTTGTGCCTATCGGATACACGAGTGGAGCTGGCATGTTCGAGATGGAGCAGGTCAAGGGTGGAAGCCCCTATGGTGCGGGAACTTATGCTGGGGATGGCACAAGACAACCTTCTGATCTAGAACTAGAAACAGCTAGCCACCAGGGAAAGTACTTTGCTGGCATCGCAAAGAAGCTTAAGGGATCTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

204

Amino Acids

21.56

Weight (kDa)

5.82

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavodoxin_2	PF02525	4 - 131	2.6e-07	Flavodoxin-like fold
Flavodoxin_1	PF00258	7 - 138	2.3e-08	Flavodoxin
FMN_red	PF03358	17 - 145	2.7e-13	NADPH-dependent FMN reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36750
fragaria_vesca	FvH4_1g13950 FvH4_2g08230 FvH4_2g08230 FvH4_2g08230
malus_domestica	MD02G1152700.v1.1 MD05G1334200.v1.1 MD10G1081100.v1.1 MD10G1309100.v1.1
prunus_persica	Prupe.4G031000_v2.0.a1 Prupe.4G031000_v2.0.a1 Prupe.7G149400_v2.0.a1 Prupe.8G102400_v2.0.a1
pyrus_communis	pycom02g12050 pycom05g30590 pycom10g06420 pycom10g26050 pycom15g23270
rosa_chinensis	RchiOBHm_Chr2g0102261 RchiOBHm_Chr6g0263041 RchiOBHm_Chr6g0263101
rosa_laevigata	RLG00000014375 RLG00000014383 RLG00000017140
rosa_multiflora	Rmu_co8453355.1_g000001 Rmu_sc0002146.1_g000009 Rmu_sc0002479.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140620 Rroxscaffold_7G00204680 Rroxscaffold_7G00204780
rosa_rugosa	Rorug02G0106100 Rorug02G0106100 Rorug06G0002900 Rorug06G0003500
rosa_samantha	Rh2AG154000 Rh2BG160000 Rh2CG159600 Rh2DG159600 Rh6AG122100 Rh6BG115200 Rh6BG116700 Rh6CG113900 Rh6CG115200 Rh6DG103000 Rh6DG103800
rosa_wichuraiana	Rw2G012040 Rw6G010470 Rw6G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	106, 460
Acc65I	GGTACC	1 cut(s)	118
AccB1I	GGYRCC	1 cut(s)	118
AccB7I	CCANNNNNTGG	1 cut(s)	111
AccI	GTMKAC	1 cut(s)	15
AciI	CCGC	2 cut(s)	327, 497
AclWI	GGATC	2 cut(s)	358, 610
AcsI	RAATTY	1 cut(s)	333
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	4 cut(s)	26, 38, 120, 572
AfiI	CCNNNNNNNGG	1 cut(s)	111
AflII	CTTAAG	1 cut(s)	596
AflIII	ACRYGT	1 cut(s)	43
AgsI	TTSAA	2 cut(s)	83, 285
AjnI	CCWGG	2 cut(s)	50, 561
AluBI	AGCT	4 cut(s)	400, 449, 554, 595
AluI	AGCT	4 cut(s)	400, 449, 554, 595
Alw21I	GWGCWC	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	365
Alw44I	GTGCAC	1 cut(s)	159
AlwI	GGATC	2 cut(s)	358, 610
ApaLI	GTGCAC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	333
Asp718I	GGTACC	1 cut(s)	118
AsuHPI	GGTGA	2 cut(s)	183, 398
AsuNHI	GCTAGC	1 cut(s)	554
AxyI	CCTNAGG	1 cut(s)	195
BaeGI	GKGCMC	1 cut(s)	163
BaeI	ACNNNNGTAYC	2 cut(s)	427, 460
BanI	GGYRCC	1 cut(s)	118
BauI	CACGAG	1 cut(s)	439
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	4 cut(s)	209, 247, 457, 509
BciT130I	CCWGG	2 cut(s)	52, 563
BciVI	GTATCC	1 cut(s)	428
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	3 cut(s)	539, 545, 555
BfmI	CTRYAG	1 cut(s)	340
BfrI	CTTAAG	1 cut(s)	596
BfuAI	ACCTGC	2 cut(s)	106, 460
BfuI	GTATCC	1 cut(s)	428
BglI	GCCNNNNNGGC	1 cut(s)	56
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
BmcAI	AGTACT	1 cut(s)	572
Bme1390I	CCNGG	2 cut(s)	52, 563
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	2 cut(s)	52, 563
BmsI	GCATC	1 cut(s)	591
BmtI	GCTAGC	1 cut(s)	558
BpmI	CTGGAG	1 cut(s)	309
BpuEI	CTTGAG	2 cut(s)	291, 339
BsaJI	CCNNGG	2 cut(s)	409, 562
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse1I	ACTGG	2 cut(s)	292, 352
Bse21I	CCTNAGG	1 cut(s)	195
BseBI	CCWGG	2 cut(s)	52, 563
BseDI	CCNNGG	2 cut(s)	409, 562
BseGI	GGATG	1 cut(s)	520
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	2 cut(s)	292, 352
BseSI	GKGCMC	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	244
BseYI	CCCAGC	1 cut(s)	509
BsgI	GTGCAG	1 cut(s)	243
BshNI	GGYRCC	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmAI	GTCTC	1 cut(s)	365
BsmI	GAATGC	1 cut(s)	420
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	3 cut(s)	350, 535, 602
BspACI	CCGC	2 cut(s)	327, 497
BspCNI	CTCAG	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	120
BspMI	ACCTGC	2 cut(s)	106, 460
BspOI	GCTAGC	1 cut(s)	558
BspPI	GGATC	2 cut(s)	358, 610
BspT107I	GGYRCC	1 cut(s)	118
BspTI	CTTAAG	1 cut(s)	596
BsrI	ACTGG	2 cut(s)	292, 352
BssECI	CCNNGG	2 cut(s)	409, 562
BssMI	GATC	3 cut(s)	350, 535, 602
BssSI	CACGAG	1 cut(s)	439
Bst2BI	CACGAG	1 cut(s)	439
Bst2UI	CCWGG	2 cut(s)	52, 563
Bst4CI	ACNGT	2 cut(s)	111, 264
Bst6I	CTCTTC	1 cut(s)	57
BstAFI	CTTAAG	1 cut(s)	596
BstC8I	GCNNGC	7 cut(s)	135, 319, 323, 327, 451, 556, 580
BstDEI	CTNAG	1 cut(s)	195
BstDSI	CCRYGG	1 cut(s)	409
BstF5I	GGATG	1 cut(s)	520
BstKTI	GATC	3 cut(s)	353, 538, 605
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	3 cut(s)	350, 535, 602
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 424, 584
BstNI	CCWGG	2 cut(s)	52, 563
BstNSI	RCATGY	2 cut(s)	47, 457
BstSCI	CCNGG	2 cut(s)	50, 561
BstSFI	CTRYAG	1 cut(s)	340
BstSLI	GKGCMC	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	244
BstX2I	RGATCY	2 cut(s)	350, 602
BstYI	RGATCY	2 cut(s)	350, 602
Bsu36I	CCTNAGG	1 cut(s)	195
BsuI	GTATCC	1 cut(s)	428
BtgI	CCRYGG	1 cut(s)	409
BtgZI	GCGATG	1 cut(s)	568
BtsCI	GGATG	1 cut(s)	520
BtsI	GCAGTG	1 cut(s)	128
BtsIMutI	CAGTG	2 cut(s)	128, 345
BveI	ACCTGC	2 cut(s)	106, 460
Cac8I	GCNNGC	7 cut(s)	135, 319, 323, 327, 451, 556, 580
Csp6I	GTAC	4 cut(s)	25, 37, 119, 571
CviAII	CATG	2 cut(s)	44, 454
CviQI	GTAC	4 cut(s)	25, 37, 119, 571
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	3 cut(s)	352, 537, 604
DpnII	GATC	3 cut(s)	350, 535, 602
DraI	TTTAAA	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	81
Eco81I	CCTNAGG	1 cut(s)	195
EcoRII	CCWGG	2 cut(s)	50, 561
FaeI	CATG	2 cut(s)	47, 457
FaiI	YATR	6 cut(s)	35, 45, 298, 455, 492, 507
FalI	AAGNNNNNCTT	2 cut(s)	514, 546
FatI	CATG	2 cut(s)	43, 453
FauI	CCCGC	2 cut(s)	334, 490
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	1 cut(s)	527
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	3 cut(s)	539, 545, 555
GluI	GCNGC	1 cut(s)	258
GsaI	CCCAGC	1 cut(s)	513
GsuI	CTGGAG	1 cut(s)	309
Hin1II	CATG	2 cut(s)	47, 457
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	1 cut(s)	281
HphI	GGTGA	2 cut(s)	183, 398
Hpy166II	GTNNAC	5 cut(s)	16, 25, 161, 365, 406
Hpy188I	TCNGA	2 cut(s)	434, 535
Hpy188III	TCNNGA	2 cut(s)	460, 539
Hpy8I	GTNNAC	5 cut(s)	16, 25, 161, 365, 406
HpyAV	CCTTC	2 cut(s)	86, 540
HpyCH4III	ACNGT	2 cut(s)	111, 264
HpyCH4V	TGCA	2 cut(s)	161, 260
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 424, 584
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	47, 457
KpnI	GGTACC	1 cut(s)	122
Kzo9I	GATC	3 cut(s)	350, 535, 602
LmnI	GCTCC	2 cut(s)	446, 466
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	1 cut(s)	591
MaeI	CTAG	3 cut(s)	539, 545, 555
MalI	GATC	3 cut(s)	352, 537, 604
MboI	GATC	3 cut(s)	350, 535, 602
MboII	GAAGA	2 cut(s)	74, 217
MflI	RGATCY	2 cut(s)	350, 602
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	2 cut(s)	186, 333
MnlI	CCTC	3 cut(s)	190, 202, 284
MseI	TTAA	2 cut(s)	267, 597
MspA1I	CMGCKG	1 cut(s)	329
MspCI	CTTAAG	1 cut(s)	596
MspR9I	CCNGG	2 cut(s)	52, 563
Mva1269I	GAATGC	1 cut(s)	420
MvaI	CCWGG	2 cut(s)	52, 563
MwoI	GCNNNNNNNGC	3 cut(s)	56, 424, 584
NdeII	GATC	3 cut(s)	350, 535, 602
NheI	GCTAGC	1 cut(s)	554
NlaIII	CATG	2 cut(s)	47, 457
NlaIV	GGNNCC	1 cut(s)	120
NspI	RCATGY	2 cut(s)	47, 457
PciI	ACATGT	1 cut(s)	43
PctI	GAATGC	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	281
PflMI	CCANNNNNTGG	1 cut(s)	111
PkrI	GCNGC	1 cut(s)	259
PscI	ACATGT	1 cut(s)	43
Psp6I	CCWGG	2 cut(s)	50, 561
PspFI	CCCAGC	1 cut(s)	509
PspGI	CCWGG	2 cut(s)	50, 561
PspN4I	GGNNCC	1 cut(s)	120
PsuI	RGATCY	2 cut(s)	350, 602
RsaI	GTAC	4 cut(s)	26, 38, 120, 572
RsaNI	GTAC	4 cut(s)	25, 37, 119, 571
SaqAI	TTAA	2 cut(s)	267, 597
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	3 cut(s)	350, 535, 602
ScaI	AGTACT	1 cut(s)	572
ScrFI	CCNGG	2 cut(s)	52, 563
SduI	GDGCHC	1 cut(s)	163
SfaNI	GCATC	1 cut(s)	591
SfcI	CTRYAG	1 cut(s)	340
SmlI	CTYRAG	3 cut(s)	306, 354, 596
SmoI	CTYRAG	3 cut(s)	306, 354, 596
Sse9I	AATT	2 cut(s)	186, 333
SsiI	CCGC	2 cut(s)	327, 497
SspMI	CTAG	3 cut(s)	539, 545, 555
StyD4I	CCNGG	2 cut(s)	50, 561
TaaI	ACNGT	2 cut(s)	111, 264
TaqI	TCGA	3 cut(s)	90, 279, 459
TasI	AATT	2 cut(s)	186, 333
TatI	WGTACW	2 cut(s)	24, 570
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	2 cut(s)	267, 597
Tru9I	TTAA	2 cut(s)	267, 597
TscAI	CASTG	2 cut(s)	135, 352
TseI	GCWGC	1 cut(s)	257
TspGWI	ACGGA	2 cut(s)	54, 426
TspRI	CASTG	2 cut(s)	135, 352
Van91I	CCANNNNNTGG	1 cut(s)	111
Vha464I	CTTAAG	1 cut(s)	596
VneI	GTGCAC	1 cut(s)	159
XapI	RAATTY	1 cut(s)	333
XbaI	TCTAGA	1 cut(s)	538
XceI	RCATGY	2 cut(s)	47, 457
XmiI	GTMKAC	1 cut(s)	15
XspI	CTAG	3 cut(s)	539, 545, 555
ZrmI	AGTACT	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.