Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001703

Physical Location & Seq

Genomic Coordinates Reverse (-)

1441536 .. 1444912

Gene Structure 3377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G031000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCCACCAAAGTCTACATTGTTTACTATTCTATGTATGGACATGTTGAGAAGCTGGCTGAAGAGATACTAAAAGGAGCTGCATCTGTGGAAGGAGTAGAAGCCAAACTATGGCAGGTAGCAGAAACACTGCAAGATGATGTTCTTGGAAAGATGGGTGCACCACCAAAGAGTGAAGTCCCTATAATTTCACCCAATGACCTTTCTGAGGCTGATGGGTTACTTTTCGGTTTCCCTACCAGATTTGGAATGATGGCTGCGCAATTTAAAGCATTTTTCGATTCAACTGGAGGTTTATGGAGAACCCAAGCACTTGCAGGCAAGCCTGCAGGAATTTTCTACAGCACTGGATCTCAAGGGGGTGGACAAGAGACTACGGCCTTGACAGCAATTACTCAGCTTGTTCACCATGGAATGGTCTTTGTGCCTATTGGATACTCATTTGGAGCTGGCATGTTCGAGATGGAGCAGATCAAGGGTGGTAGCCCCTATGGTGCAGGAACTTATGCTGGGGATGGCACAAGACAGCCTTCTGAGCTAGAACTACAACAAGCTTTCCACCAGGGAAAGTACTTCGCTGGCATTGCGAAAAAGCTTAAGGGCTCAACTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

205

Amino Acids

21.74

Weight (kDa)

5.8

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36750
fragaria_vesca	FvH4_1g13950 FvH4_2g08230 FvH4_2g08230 FvH4_2g08230
malus_domestica	MD02G1152700.v1.1 MD05G1334200.v1.1 MD10G1081100.v1.1 MD10G1309100.v1.1
prunus_persica	Prupe.4G031000_v2.0.a1 Prupe.4G031000_v2.0.a1 Prupe.7G149400_v2.0.a1 Prupe.8G102400_v2.0.a1
pyrus_communis	pycom02g12050 pycom05g30590 pycom10g06420 pycom10g26050 pycom15g23270
rosa_chinensis	RchiOBHm_Chr2g0102261 RchiOBHm_Chr6g0263041 RchiOBHm_Chr6g0263101
rosa_laevigata	RLG00000014375 RLG00000014383 RLG00000017140
rosa_multiflora	Rmu_co8453355.1_g000001 Rmu_sc0002146.1_g000009 Rmu_sc0002479.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140620 Rroxscaffold_7G00204680 Rroxscaffold_7G00204780
rosa_rugosa	Rorug02G0106100 Rorug02G0106100 Rorug06G0002900 Rorug06G0003500
rosa_samantha	Rh2AG154000 Rh2BG160000 Rh2CG159600 Rh2DG159600 Rh6AG122100 Rh6BG115200 Rh6BG116700 Rh6CG113900 Rh6CG115200 Rh6DG103000 Rh6DG103800
rosa_wichuraiana	Rw2G012040 Rw6G010470 Rw6G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	261
Acc36I	ACCTGC	1 cut(s)	106
AccB7I	CCANNNNNTGG	2 cut(s)	111, 415
AccI	GTMKAC	1 cut(s)	15
AclWI	GGATC	1 cut(s)	358
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	333
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	1 cut(s)	572
AfiI	CCNNNNNNNGG	3 cut(s)	111, 208, 415
AflII	CTTAAG	1 cut(s)	596
AflIII	ACRYGT	1 cut(s)	43
AgsI	TTSAA	1 cut(s)	285
AjnI	CCWGG	1 cut(s)	561
AluBI	AGCT	7 cut(s)	55, 80, 400, 449, 538, 554, 595
AluI	AGCT	7 cut(s)	55, 80, 400, 449, 538, 554, 595
Alw21I	GWGCWC	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	365
Alw44I	GTGCAC	1 cut(s)	159
AlwI	GGATC	1 cut(s)	358
AoxI	GGCC	2 cut(s)	3, 378
ApaLI	GTGCAC	1 cut(s)	159
ApeKI	GCWGC	2 cut(s)	80, 257
ApoI	RAATTY	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	262
AsuHPI	GGTGA	2 cut(s)	183, 398
BaeGI	GKGCMC	1 cut(s)	163
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	605
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	67, 244
BccI	CCATC	5 cut(s)	148, 209, 247, 457, 509
BceAI	ACGGC	1 cut(s)	393
BciT130I	CCWGG	1 cut(s)	563
BciVI	GTATCC	1 cut(s)	428
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	1 cut(s)	539
BfmI	CTRYAG	2 cut(s)	327, 340
BfrI	CTTAAG	1 cut(s)	596
BfuAI	ACCTGC	1 cut(s)	106
BfuI	GTATCC	1 cut(s)	428
BisI	GCNGC	2 cut(s)	81, 258
BlsI	GCNGC	2 cut(s)	82, 259
BmcAI	AGTACT	1 cut(s)	572
Bme1390I	CCNGG	1 cut(s)	563
BmrFI	CCNGG	1 cut(s)	563
BmsI	GCATC	1 cut(s)	92
BpmI	CTGGAG	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	409, 562
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 208, 415
Bse1I	ACTGG	2 cut(s)	292, 352
Bse3DI	GCAATG	1 cut(s)	582
BseBI	CCWGG	1 cut(s)	563
BseDI	CCNNGG	2 cut(s)	409, 562
BseGI	GGATG	1 cut(s)	520
BseLI	CCNNNNNNNGG	3 cut(s)	111, 208, 415
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	3 cut(s)	198, 410, 525
BseNI	ACTGG	2 cut(s)	292, 352
BseSI	GKGCMC	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	67, 244
BseYI	CCCAGC	1 cut(s)	509
BsgI	GTGCAG	1 cut(s)	516
BshFI	GGCC	2 cut(s)	5, 380
BsiHKAI	GWGCWC	1 cut(s)	163
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	3 cut(s)	111, 208, 415
BsmAI	GTCTC	1 cut(s)	365
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	2 cut(s)	5, 380
Bsp1286I	GDGCHC	2 cut(s)	163, 605
Bsp143I	GATC	2 cut(s)	350, 471
Bsp19I	CCATGG	1 cut(s)	409
BspANI	GGCC	2 cut(s)	5, 380
BspCNI	CTCAG	3 cut(s)	199, 409, 526
BspMAI	CTGCAG	1 cut(s)	331
BspMI	ACCTGC	1 cut(s)	106
BspPI	GGATC	1 cut(s)	358
BspTI	CTTAAG	1 cut(s)	596
BsrDI	GCAATG	1 cut(s)	582
BsrI	ACTGG	2 cut(s)	292, 352
BssECI	CCNNGG	2 cut(s)	409, 562
BssMI	GATC	2 cut(s)	350, 471
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	1 cut(s)	563
Bst4CI	ACNGT	1 cut(s)	610
Bst6I	CTCTTC	1 cut(s)	57
BstAFI	CTTAAG	1 cut(s)	596
BstC8I	GCNNGC	6 cut(s)	57, 319, 323, 327, 451, 580
BstDEI	CTNAG	3 cut(s)	207, 396, 534
BstDSI	CCRYGG	1 cut(s)	409
BstENI	CCTNNNNNAGG	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	520
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	2 cut(s)	353, 474
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	2 cut(s)	350, 471
BstMWI	GCNNNNNNNGC	3 cut(s)	386, 535, 584
BstNI	CCWGG	1 cut(s)	563
BstNSI	RCATGY	2 cut(s)	47, 457
BstSCI	CCNGG	1 cut(s)	561
BstSFI	CTRYAG	2 cut(s)	327, 340
BstSLI	GKGCMC	1 cut(s)	163
BstV1I	GCAGC	2 cut(s)	67, 244
BstX2I	RGATCY	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	350
BsuI	GTATCC	1 cut(s)	428
BsuRI	GGCC	2 cut(s)	5, 380
BtgI	CCRYGG	1 cut(s)	409
BtsCI	GGATG	1 cut(s)	520
BtsI	GCAGTG	1 cut(s)	128
BtsIMutI	CAGTG	2 cut(s)	128, 345
BveI	ACCTGC	1 cut(s)	106
Cac8I	GCNNGC	6 cut(s)	57, 319, 323, 327, 451, 580
CfoI	GCGC	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	571
CviAII	CATG	3 cut(s)	44, 410, 454
CviQI	GTAC	1 cut(s)	571
DdeI	CTNAG	3 cut(s)	207, 396, 534
DpnI	GATC	2 cut(s)	352, 473
DpnII	GATC	2 cut(s)	350, 471
DraI	TTTAAA	1 cut(s)	268
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	409
Eco24I	GRGCYC	1 cut(s)	605
Eco57I	CTGAAG	1 cut(s)	81
EcoNI	CCTNNNNNAGG	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	561
EcoT14I	CCWWGG	1 cut(s)	409
EcoT38I	GRGCYC	1 cut(s)	605
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	3 cut(s)	47, 413, 457
FalI	AAGNNNNNCTT	2 cut(s)	514, 546
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	3 cut(s)	43, 409, 453
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	2 cut(s)	81, 258
FokI	GGATG	1 cut(s)	527
FriOI	GRGCYC	1 cut(s)	605
Fsp4HI	GCNGC	2 cut(s)	81, 258
FspBI	CTAG	1 cut(s)	539
FspI	TGCGCA	1 cut(s)	261
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	2 cut(s)	81, 258
GsaI	CCCAGC	1 cut(s)	513
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	2 cut(s)	5, 380
HhaI	GCGC	1 cut(s)	262
Hin1II	CATG	3 cut(s)	47, 413, 457
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HindIII	AAGCTT	2 cut(s)	552, 593
HinfI	GANTC	1 cut(s)	281
HphI	GGTGA	2 cut(s)	183, 398
Hpy166II	GTNNAC	5 cut(s)	16, 25, 161, 365, 406
Hpy188I	TCNGA	3 cut(s)	208, 535, 614
Hpy188III	TCNNGA	1 cut(s)	460
Hpy8I	GTNNAC	5 cut(s)	16, 25, 161, 365, 406
HpyAV	CCTTC	2 cut(s)	86, 540
HpyCH4III	ACNGT	1 cut(s)	610
HpyCH4V	TGCA	6 cut(s)	83, 133, 161, 317, 329, 497
HpyF10VI	GCNNNNNNNGC	3 cut(s)	386, 535, 584
HpyF3I	CTNAG	3 cut(s)	207, 396, 534
Hsp92II	CATG	3 cut(s)	47, 413, 457
HspAI	GCGC	1 cut(s)	260
Kzo9I	GATC	2 cut(s)	350, 471
LmnI	GCTCC	3 cut(s)	77, 446, 466
Lsp1109I	GCAGC	2 cut(s)	67, 244
LweI	GCATC	1 cut(s)	92
MaeI	CTAG	1 cut(s)	539
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	2 cut(s)	352, 473
MboI	GATC	2 cut(s)	350, 471
MboII	GAAGA	1 cut(s)	74
MflI	RGATCY	1 cut(s)	350
MhlI	GDGCHC	2 cut(s)	163, 605
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	186, 263, 333, 390
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	2 cut(s)	202, 284
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	267, 597
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	596
MspR9I	CCNGG	1 cut(s)	563
MvaI	CCWGG	1 cut(s)	563
MwoI	GCNNNNNNNGC	3 cut(s)	386, 535, 584
NcoI	CCATGG	1 cut(s)	409
NdeII	GATC	2 cut(s)	350, 471
NlaIII	CATG	3 cut(s)	47, 413, 457
NsbI	TGCGCA	1 cut(s)	261
NspI	RCATGY	2 cut(s)	47, 457
PciI	ACATGT	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	281
PflMI	CCANNNNNTGG	2 cut(s)	111, 415
PkrI	GCNGC	2 cut(s)	82, 259
PscI	ACATGT	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	561
PspFI	CCCAGC	1 cut(s)	509
PspGI	CCWGG	1 cut(s)	561
PstI	CTGCAG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	350
RsaI	GTAC	1 cut(s)	572
RsaNI	GTAC	1 cut(s)	571
SaqAI	TTAA	2 cut(s)	267, 597
SatI	GCNGC	2 cut(s)	81, 258
Sau3AI	GATC	2 cut(s)	350, 471
SbfI	CCTGCAGG	1 cut(s)	331
ScaI	AGTACT	1 cut(s)	572
ScrFI	CCNGG	1 cut(s)	563
SdaI	CCTGCAGG	1 cut(s)	331
SduI	GDGCHC	2 cut(s)	163, 605
SfaNI	GCATC	1 cut(s)	92
SfcI	CTRYAG	2 cut(s)	327, 340
SmlI	CTYRAG	2 cut(s)	354, 596
SmoI	CTYRAG	2 cut(s)	354, 596
Sse8387I	CCTGCAGG	1 cut(s)	331
Sse9I	AATT	4 cut(s)	186, 263, 333, 390
SspMI	CTAG	1 cut(s)	539
StyD4I	CCNGG	1 cut(s)	561
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	1 cut(s)	610
TaqI	TCGA	2 cut(s)	279, 459
TasI	AATT	4 cut(s)	186, 263, 333, 390
TatI	WGTACW	1 cut(s)	570
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	2 cut(s)	267, 597
Tru9I	TTAA	2 cut(s)	267, 597
TscAI	CASTG	2 cut(s)	135, 352
TseI	GCWGC	2 cut(s)	80, 257
TspRI	CASTG	2 cut(s)	135, 352
Van91I	CCANNNNNTGG	2 cut(s)	111, 415
Vha464I	CTTAAG	1 cut(s)	596
VneI	GTGCAC	1 cut(s)	159
XagI	CCTNNNNNAGG	1 cut(s)	206
XapI	RAATTY	1 cut(s)	333
XceI	RCATGY	2 cut(s)	47, 457
XmiI	GTMKAC	1 cut(s)	15
XspI	CTAG	1 cut(s)	539
ZrmI	AGTACT	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.