Rw6G010470

Minor allergen Alt a

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001703
Physical Location & Seq
Reverse (-)
18073752 .. 18075247
1496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G010470.1

Sequence Viewer

Length: 354 bp
ATGGCTGCTCAGATGAAGGCGTTTTTCGACTCCACGGGGGAGCTTTGGAGGGAGCAGAAGCTTGCAGGGGTGCCTGCTGGGTTCTTTGTGAGTACTGGCACACAGGGTGGTGGACAGGAGACTAATGCTTGGACAGCCATTACTCAGTTAGCACACCATGGAATGATATATGTTCCAATTGGCTACACCTTTGGTGCTGGAATGTTCCAAATGGACTCCCTTAGAGGAGGGTCTCCATATGGTTCTGGGGTTCTTTCTGGAGATGGCACAAGGGCACCAACTGAGACAGAGCTCGCTCTTGCAGAGCATCACGGAAAGTACATGGCTACTATTGTCAAGAAGCTTGTACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 ko01110 map00130 map01110
Pfam Domains
Protein Families
FMN_red

Protein Analysis

117

Amino Acids

12.44

Weight (kDa)

6.49

Isoelectric Point (pI)

27.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 70, 274
AdeI CACNNNGTG 1 cut(s) 107
AfaI GTAC 3 cut(s) 94, 320, 348
AluBI AGCT 4 cut(s) 43, 61, 292, 343
AluI AGCT 4 cut(s) 43, 61, 292, 343
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 3 cut(s) 113, 237, 278
ApeKI GCWGC 1 cut(s) 5
BaeGI GKGCMC 1 cut(s) 277
BanI GGYRCC 2 cut(s) 70, 274
BanII GRGCYC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 294
BccI CCATC 1 cut(s) 257
BcoDI GTCTC 3 cut(s) 113, 237, 278
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmcAI AGTACT 1 cut(s) 94
BmiI GGNNCC 2 cut(s) 72, 276
BmsI GCATC 1 cut(s) 316
BpmI CTGGAG 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 33, 157
Bse1I ACTGG 1 cut(s) 100
BseDI CCNNGG 2 cut(s) 33, 157
BseMII CTCAG 3 cut(s) 23, 158, 273
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 240
BseSI GKGCMC 1 cut(s) 277
BseYI CCCAGC 1 cut(s) 77
BshNI GGYRCC 2 cut(s) 70, 274
BsiHKAI GWGCWC 1 cut(s) 294
BsmAI GTCTC 3 cut(s) 113, 237, 278
Bso31I GGTCTC 1 cut(s) 237
Bsp1286I GDGCHC 2 cut(s) 277, 294
Bsp1407I TGTACA 1 cut(s) 346
Bsp19I CCATGG 1 cut(s) 157
BspCNI CTCAG 3 cut(s) 22, 157, 274
BspLI GGNNCC 2 cut(s) 72, 276
BspT107I GGYRCC 2 cut(s) 70, 274
BspTNI GGTCTC 1 cut(s) 237
BsrGI TGTACA 1 cut(s) 346
BsrI ACTGG 1 cut(s) 100
BssECI CCNNGG 2 cut(s) 33, 157
BssT1I CCWWGG 1 cut(s) 157
BstAUI TGTACA 1 cut(s) 346
BstC8I GCNNGC 3 cut(s) 63, 75, 294
BstDEI CTNAG 4 cut(s) 9, 144, 221, 282
BstDSI CCRYGG 2 cut(s) 33, 157
BstMAI GTCTC 3 cut(s) 113, 237, 278
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstSLI GKGCMC 1 cut(s) 277
BtgI CCRYGG 2 cut(s) 33, 157
Cac8I GCNNGC 3 cut(s) 63, 75, 294
Csp6I GTAC 3 cut(s) 93, 319, 347
CviAII CATG 2 cut(s) 158, 322
CviJI RGCY 8 cut(s) 5, 43, 61, 137, 183, 292, 326, 343
CviKI_1 RGCY 8 cut(s) 5, 43, 61, 137, 183, 292, 326, 343
CviQI GTAC 3 cut(s) 93, 319, 347
DdeI CTNAG 4 cut(s) 9, 144, 221, 282
DraIII CACNNNGTG 1 cut(s) 107
Ecl136II GAGCTC 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 294
Eco31I GGTCTC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 292
EcoICRI GAGCTC 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 157
EcoT38I GRGCYC 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 2 cut(s) 161, 325
FaiI YATR 6 cut(s) 159, 169, 171, 238, 240, 323
FatI CATG 2 cut(s) 157, 321
FauNDI CATATG 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 6
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
GsaI CCCAGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 279
Hin1II CATG 2 cut(s) 161, 325
HindIII AAGCTT 2 cut(s) 59, 341
HinfI GANTC 2 cut(s) 29, 215
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 2 cut(s) 258, 337
Hpy8I GTNNAC 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 10
HpyCH4V TGCA 2 cut(s) 65, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 4 cut(s) 9, 144, 221, 282
Hsp92II CATG 2 cut(s) 161, 325
LmnI GCTCC 2 cut(s) 40, 52
LpnPI CCDG 9 cut(s) 51, 63, 81, 87, 89, 101, 183, 231, 243
LweI GCATC 1 cut(s) 316
MfeI CAATTG 1 cut(s) 177
MhlI GDGCHC 2 cut(s) 277, 294
MluCI AATT 1 cut(s) 177
MlyI GAGTC 2 cut(s) 23, 209
MnlI CCTC 3 cut(s) 42, 218, 221
MunI CAATTG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 134
NcoI CCATGG 1 cut(s) 157
NdeI CATATG 1 cut(s) 238
NlaIII CATG 2 cut(s) 161, 325
NlaIV GGNNCC 2 cut(s) 72, 276
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 23, 209
PpsI GAGTC 2 cut(s) 23, 209
Psp124BI GAGCTC 1 cut(s) 294
PspFI CCCAGC 1 cut(s) 77
PspN4I GGNNCC 2 cut(s) 72, 276
RsaI GTAC 3 cut(s) 94, 320, 348
RsaNI GTAC 3 cut(s) 93, 319, 347
SacI GAGCTC 1 cut(s) 294
SatI GCNGC 1 cut(s) 6
ScaI AGTACT 1 cut(s) 94
SchI GAGTC 2 cut(s) 23, 209
SduI GDGCHC 2 cut(s) 277, 294
SetI ASST 5 cut(s) 45, 63, 191, 294, 345
SfaNI GCATC 1 cut(s) 316
Sse9I AATT 1 cut(s) 177
SstI GAGCTC 1 cut(s) 294
StyI CCWWGG 1 cut(s) 157
TaqI TCGA 1 cut(s) 27
TasI AATT 1 cut(s) 177
TatI WGTACW 3 cut(s) 92, 318, 346
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 29
TspGWI ACGGA 1 cut(s) 327
ZrmI AGTACT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.