Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001703

Physical Location & Seq

Genomic Coordinates Forward (+)

54163036 .. 54165284

Gene Structure 2249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00204680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGGTAAAGGAGGTGGCTGTGTGCCCAGCAAGAATAGGCCACCGGCAGGCGTTGCCGGCGCTGATCTTCCGAACCCAAAAAGCGATGATCTTGTTTCAGACCAAAACCAAACCCAAACCACAGAAACAACAAACCCAATTAAGGATGAAGGGGTTGCAGAGAAAAAGCAACAGAGGAAGAAGCTGAGGGTTTTCATAGTGTTTTACTCAATGTATGGGCATGTGGAGCTGTTGGCCAGAGAGATTAAGAAAGGGGTTGATTCCACTGATGGGGTTGAAGGGGTTCTGTACCGGGTTCCGGAAACGCTGTCGTCTGAGGTGTTGGAGCAGATGAAAGTGCCCAAGAAGGATGATCATGGGGTGCCTGTGATAGTGCCTGAGAGACTGGTGGAGGCTGATGGGGTGTTGTTCGGGTTTCCTACCCGGTATGGGTCAATGGCTGCTCAGATGAAGGCGTTTTTCGACTCCACGGGGGAGCTGTGGAGGAGCAGAAGCTTGCAGGGGTGCCTGCTGGGTTCTTTTTGGACAGCCATTACTCAGTTAGCACACCATGGAATGATATATGTTCCAATTGGCTACACCTTTGGTGCTGGAATGTTCCAAATGGACTCCCTTAGAGGAGGGTCTCCATATGGTTCTGGGGTTCTTTCTGGAGATGGCACAAGGGCACCAACTGAGACAGAGCTCGCTCTTGCAGAGCATCACGGAAAGTACATGGCTACTATTGTCAAGAAGCTTGTACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

248

Amino Acids

26.95

Weight (kDa)

7.06

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavodoxin_1	PF00258	66 - 176	2.1e-08	Flavodoxin
FMN_red	PF03358	77 - 168	1.7e-06	NADPH-dependent FMN reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36750
fragaria_vesca	FvH4_1g13950 FvH4_2g08230 FvH4_2g08230 FvH4_2g08230
malus_domestica	MD02G1152700.v1.1 MD05G1334200.v1.1 MD10G1081100.v1.1 MD10G1309100.v1.1
prunus_persica	Prupe.4G031000_v2.0.a1 Prupe.4G031000_v2.0.a1 Prupe.7G149400_v2.0.a1 Prupe.8G102400_v2.0.a1
pyrus_communis	pycom02g12050 pycom05g30590 pycom10g06420 pycom10g26050 pycom15g23270
rosa_chinensis	RchiOBHm_Chr2g0102261 RchiOBHm_Chr6g0263041 RchiOBHm_Chr6g0263101
rosa_laevigata	RLG00000014375 RLG00000014383 RLG00000017140
rosa_multiflora	Rmu_co8453355.1_g000001 Rmu_sc0002146.1_g000009 Rmu_sc0002479.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140620 Rroxscaffold_7G00204680 Rroxscaffold_7G00204780
rosa_rugosa	Rorug02G0106100 Rorug02G0106100 Rorug06G0002900 Rorug06G0003500
rosa_samantha	Rh2AG154000 Rh2BG160000 Rh2CG159600 Rh2DG159600 Rh6AG122100 Rh6BG115200 Rh6BG116700 Rh6CG113900 Rh6CG115200 Rh6DG103000 Rh6DG103800
rosa_wichuraiana	Rw2G012040 Rw6G010470 Rw6G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	361, 504, 667
AccIII	TCCGGA	1 cut(s)	298
AcoI	YGGCCR	1 cut(s)	234
AfaI	GTAC	3 cut(s)	290, 713, 741
AfiI	CCNNNNNNNGG	5 cut(s)	47, 142, 270, 298, 429
AgsI	TTSAA	1 cut(s)	278
AluBI	AGCT	6 cut(s)	184, 229, 478, 495, 685, 736
AluI	AGCT	6 cut(s)	184, 229, 478, 495, 685, 736
Alw21I	GWGCWC	1 cut(s)	687
Alw26I	GTCTC	3 cut(s)	376, 630, 671
Aor13HI	TCCGGA	1 cut(s)	298
AoxI	GGCC	2 cut(s)	38, 234
ApeKI	GCWGC	1 cut(s)	440
Asp700I	GAANNNNTTC	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	62
AsuC2I	CCSGG	2 cut(s)	293, 424
BaeGI	GKGCMC	3 cut(s)	27, 342, 670
BalI	TGGCCA	1 cut(s)	236
BanI	GGYRCC	3 cut(s)	361, 504, 667
BanII	GRGCYC	1 cut(s)	687
Bbv12I	GWGCWC	1 cut(s)	687
BbvCI	CCTCAGC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	3 cut(s)	263, 392, 650
BclI	TGATCA	1 cut(s)	352
BcnI	CCSGG	2 cut(s)	293, 424
BcoDI	GTCTC	3 cut(s)	376, 630, 671
BfoI	RGCGCY	1 cut(s)	63
BisI	GCNGC	1 cut(s)	441
BlsI	GCNGC	1 cut(s)	442
Bme1390I	CCNGG	2 cut(s)	293, 424
BmiI	GGNNCC	4 cut(s)	297, 363, 506, 669
BmrFI	CCNGG	2 cut(s)	293, 424
BmsI	GCATC	1 cut(s)	709
BpmI	CTGGAG	1 cut(s)	672
Bpu10I	CCTNAGC	1 cut(s)	185
BpuMI	CCSGG	2 cut(s)	293, 424
BsaI	GGTCTC	1 cut(s)	630
BsaJI	CCNNGG	2 cut(s)	468, 550
BsaWI	WCCGGW	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	5 cut(s)	47, 142, 270, 298, 429
Bse118I	RCCGGY	2 cut(s)	43, 56
Bse1I	ACTGG	1 cut(s)	390
BseAI	TCCGGA	1 cut(s)	298
BseDI	CCNNGG	2 cut(s)	468, 550
BseGI	GGATG	2 cut(s)	151, 355
BseLI	CCNNNNNNNGG	5 cut(s)	47, 142, 270, 298, 429
BseMII	CTCAG	6 cut(s)	176, 306, 369, 458, 551, 666
BseNI	ACTGG	1 cut(s)	390
BseRI	GAGGAG	2 cut(s)	499, 633
BseSI	GKGCMC	3 cut(s)	27, 342, 670
BseXI	GCAGC	1 cut(s)	427
BseYI	CCCAGC	2 cut(s)	26, 511
BshFI	GGCC	2 cut(s)	40, 236
BshNI	GGYRCC	3 cut(s)	361, 504, 667
BsiHKAI	GWGCWC	1 cut(s)	687
BsiSI	CCGG	5 cut(s)	44, 57, 292, 299, 424
BslI	CCNNNNNNNGG	5 cut(s)	47, 142, 270, 298, 429
BsmAI	GTCTC	3 cut(s)	376, 630, 671
BsnI	GGCC	2 cut(s)	40, 236
Bso31I	GGTCTC	1 cut(s)	630
Bsp1286I	GDGCHC	4 cut(s)	27, 342, 670, 687
Bsp13I	TCCGGA	1 cut(s)	298
Bsp1407I	TGTACA	1 cut(s)	739
Bsp143I	GATC	3 cut(s)	64, 88, 352
Bsp19I	CCATGG	1 cut(s)	550
BspANI	GGCC	2 cut(s)	40, 236
BspCNI	CTCAG	6 cut(s)	177, 307, 370, 457, 550, 667
BspEI	TCCGGA	1 cut(s)	298
BspLI	GGNNCC	4 cut(s)	297, 363, 506, 669
BspT107I	GGYRCC	3 cut(s)	361, 504, 667
BspTNI	GGTCTC	1 cut(s)	630
BsrFI	RCCGGY	2 cut(s)	43, 56
BsrGI	TGTACA	1 cut(s)	739
BsrI	ACTGG	1 cut(s)	390
BssAI	RCCGGY	2 cut(s)	43, 56
BssECI	CCNNGG	2 cut(s)	468, 550
BssMI	GATC	3 cut(s)	64, 88, 352
BssT1I	CCWWGG	1 cut(s)	550
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstAUI	TGTACA	1 cut(s)	739
BstC8I	GCNNGC	5 cut(s)	49, 58, 497, 509, 687
BstDEI	CTNAG	7 cut(s)	185, 315, 378, 444, 537, 614, 675
BstDSI	CCRYGG	2 cut(s)	468, 550
BstF5I	GGATG	2 cut(s)	151, 355
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	3 cut(s)	67, 91, 355
BstMAI	GTCTC	3 cut(s)	376, 630, 671
BstMBI	GATC	3 cut(s)	64, 88, 352
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 57, 226
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	2 cut(s)	291, 422
BstSLI	GKGCMC	3 cut(s)	27, 342, 670
BstV1I	GCAGC	1 cut(s)	427
BsuRI	GGCC	2 cut(s)	40, 236
BtgI	CCRYGG	2 cut(s)	468, 550
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	151, 355
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	5 cut(s)	49, 58, 497, 509, 687
CfoI	GCGC	1 cut(s)	62
Cfr10I	RCCGGY	2 cut(s)	43, 56
Csp6I	GTAC	3 cut(s)	289, 712, 740
CviAII	CATG	4 cut(s)	221, 356, 551, 715
CviQI	GTAC	3 cut(s)	289, 712, 740
DdeI	CTNAG	7 cut(s)	185, 315, 378, 444, 537, 614, 675
DpnI	GATC	3 cut(s)	66, 90, 354
DpnII	GATC	3 cut(s)	64, 88, 352
EaeI	YGGCCR	1 cut(s)	234
Ecl136II	GAGCTC	1 cut(s)	685
Eco130I	CCWWGG	1 cut(s)	550
Eco24I	GRGCYC	1 cut(s)	687
Eco31I	GGTCTC	1 cut(s)	630
Eco53kI	GAGCTC	1 cut(s)	685
EcoICRI	GAGCTC	1 cut(s)	685
EcoT14I	CCWWGG	1 cut(s)	550
EcoT38I	GRGCYC	1 cut(s)	687
ErhI	CCWWGG	1 cut(s)	550
FaeI	CATG	4 cut(s)	224, 359, 554, 718
FatI	CATG	4 cut(s)	220, 355, 550, 714
FauNDI	CATATG	1 cut(s)	631
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	441
FokI	GGATG	2 cut(s)	158, 362
FriOI	GRGCYC	1 cut(s)	687
Fsp4HI	GCNGC	1 cut(s)	441
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	1 cut(s)	441
GsaI	CCCAGC	2 cut(s)	30, 515
GsuI	CTGGAG	1 cut(s)	672
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	2 cut(s)	40, 236
HapII	CCGG	5 cut(s)	44, 57, 292, 299, 424
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	4 cut(s)	224, 359, 554, 718
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HindIII	AAGCTT	2 cut(s)	493, 734
HinfI	GANTC	3 cut(s)	260, 464, 608
HpaII	CCGG	5 cut(s)	44, 57, 292, 299, 424
Hpy188I	TCNGA	4 cut(s)	72, 100, 316, 447
Hpy188III	TCNNGA	3 cut(s)	299, 651, 730
HpyAV	CCTTC	4 cut(s)	143, 272, 340, 445
HpyCH4V	TGCA	3 cut(s)	158, 499, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 57, 226
HpyF3I	CTNAG	7 cut(s)	185, 315, 378, 444, 537, 614, 675
Hsp92II	CATG	4 cut(s)	224, 359, 554, 718
HspAI	GCGC	1 cut(s)	60
Kpn2I	TCCGGA	1 cut(s)	298
KroI	GCCGGC	1 cut(s)	56
KroNI	GCCGGC	1 cut(s)	58
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	64, 88, 352
LmnI	GCTCC	4 cut(s)	226, 325, 475, 486
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	1 cut(s)	709
MalI	GATC	3 cut(s)	66, 90, 354
MboI	GATC	3 cut(s)	64, 88, 352
MboII	GAAGA	2 cut(s)	59, 190
MfeI	CAATTG	1 cut(s)	570
MhlI	GDGCHC	4 cut(s)	27, 342, 670, 687
MlsI	TGGCCA	1 cut(s)	236
MluCI	AATT	2 cut(s)	138, 570
MluNI	TGGCCA	1 cut(s)	236
MlyI	GAGTC	2 cut(s)	458, 602
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	8 cut(s)	5, 168, 180, 310, 385, 477, 611, 614
Mox20I	TGGCCA	1 cut(s)	236
MroI	TCCGGA	1 cut(s)	298
MroNI	GCCGGC	1 cut(s)	56
MroXI	GAANNNNTTC	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	236
MseI	TTAA	2 cut(s)	141, 246
Msp20I	TGGCCA	1 cut(s)	236
MspI	CCGG	5 cut(s)	44, 57, 292, 299, 424
MspR9I	CCNGG	2 cut(s)	293, 424
MunI	CAATTG	1 cut(s)	570
MwoI	GCNNNNNNNGC	3 cut(s)	53, 57, 226
NaeI	GCCGGC	1 cut(s)	58
NciI	CCSGG	2 cut(s)	293, 424
NcoI	CCATGG	1 cut(s)	550
NdeI	CATATG	1 cut(s)	631
NdeII	GATC	3 cut(s)	64, 88, 352
NgoMIV	GCCGGC	1 cut(s)	56
NlaIII	CATG	4 cut(s)	224, 359, 554, 718
NlaIV	GGNNCC	4 cut(s)	297, 363, 506, 669
NspI	RCATGY	1 cut(s)	224
PdiI	GCCGGC	1 cut(s)	58
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	442
PleI	GAGTC	2 cut(s)	458, 602
PpsI	GAGTC	2 cut(s)	458, 602
Psp124BI	GAGCTC	1 cut(s)	687
PspFI	CCCAGC	2 cut(s)	26, 511
PspN4I	GGNNCC	4 cut(s)	297, 363, 506, 669
RsaI	GTAC	3 cut(s)	290, 713, 741
RsaNI	GTAC	3 cut(s)	289, 712, 740
SacI	GAGCTC	1 cut(s)	687
SaqAI	TTAA	2 cut(s)	141, 246
SatI	GCNGC	1 cut(s)	441
Sau3AI	GATC	3 cut(s)	64, 88, 352
SchI	GAGTC	2 cut(s)	458, 602
ScrFI	CCNGG	2 cut(s)	293, 424
SduI	GDGCHC	4 cut(s)	27, 342, 670, 687
SetI	ASST	9 cut(s)	16, 186, 231, 321, 480, 497, 584, 687, 738
SfaNI	GCATC	1 cut(s)	709
Sse9I	AATT	2 cut(s)	138, 570
SstI	GAGCTC	1 cut(s)	687
StyD4I	CCNGG	2 cut(s)	291, 422
StyI	CCWWGG	1 cut(s)	550
TaqI	TCGA	1 cut(s)	462
TasI	AATT	2 cut(s)	138, 570
TatI	WGTACW	2 cut(s)	711, 739
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	2 cut(s)	141, 246
Tru9I	TTAA	2 cut(s)	141, 246
TscAI	CASTG	1 cut(s)	271
TseI	GCWGC	1 cut(s)	440
TspDTI	ATGAA	4 cut(s)	162, 184, 347, 464
TspGWI	ACGGA	1 cut(s)	720
TspRI	CASTG	1 cut(s)	271
XceI	RCATGY	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.