Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001703

Physical Location & Seq

Genomic Coordinates Forward (+)

7679007 .. 7681185

Gene Structure 2179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g13950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGGGAAAGGTGGGGGCTGCGTCCCAAGCAAGAAGAAGGTCCCGTCCGACGTAGTCGCCACCGAAGACGCCACGCGCGCCTCACGTGACGCCCCGATCGCCGCCGAGGACACTTCCGCCTCCAATTCCAATCCCATTCCGGACTCCAGCCAAAACGACGCCGTCTCGGAGGCGTCGCGTCCGATTGCGGCGGCGAAATTGAGGATATTCATCGTGTTCTACTCGATGTACGGACACGTGGAGGAGCTGGCGCGGAGGATCAAGAAGGGGGTGGACGGCGTGGAGGGAGTGGAGGGGGTGCTGTACAGGGTGCCGGAGACGCTGACGCCGGAGGTTCTGGAGGCGATGAAGGCGCCTTCGAAGGATGATGGAATTCCGGAGATTTCGGCGGCGGAGATGGCGGCGGCGGATGGGTTATTGTTTGGGTTTCCGACGAGGTATGGCTGCATGGCGGCGCAGATGAAGGCGTTTTTCGACTCGACCGGAGGGTTGTGGAAGGAGCAGAGCCTCGCCGGAAAGCCGGCCGGGTTTTTTGTCAGTACGGGGACTCAGGGCGGTGGCCAAGAAACCACAGCTTGGACAGCAATCACGCAATTAGCACACCATGGAATGCTATTTGTTCCCATTGGGTATACTTTTGGAGCTGGAATGTTCAAGATGGACTCAGTAAGAGGGGGTTCTCCATATGGTGCAGGTGTTTTTGCTGGCGATGGCTCAAGACAGCCAAGTGAAACAGAGTTGGGGCTCGCAGAGCATCAAGGGAAGTATATGGCAGCAGTAGTCAAGAAGCTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003955 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0010181 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044464 GO:0048037 GO:0050662 GO:0055114 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

266

Amino Acids

27.72

Weight (kDa)

5.65

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavodoxin_1	PF00258	71 - 203	4.7e-13	Flavodoxin
FMN_red	PF03358	82 - 210	3e-13	NADPH-dependent FMN reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36750
fragaria_vesca	FvH4_1g13950 FvH4_2g08230 FvH4_2g08230 FvH4_2g08230
malus_domestica	MD02G1152700.v1.1 MD05G1334200.v1.1 MD10G1081100.v1.1 MD10G1309100.v1.1
prunus_persica	Prupe.4G031000_v2.0.a1 Prupe.4G031000_v2.0.a1 Prupe.7G149400_v2.0.a1 Prupe.8G102400_v2.0.a1
pyrus_communis	pycom02g12050 pycom05g30590 pycom10g06420 pycom10g26050 pycom15g23270
rosa_chinensis	RchiOBHm_Chr2g0102261 RchiOBHm_Chr6g0263041 RchiOBHm_Chr6g0263101
rosa_laevigata	RLG00000014375 RLG00000014383 RLG00000017140
rosa_multiflora	Rmu_co8453355.1_g000001 Rmu_sc0002146.1_g000009 Rmu_sc0002479.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140620 Rroxscaffold_7G00204680 Rroxscaffold_7G00204780
rosa_rugosa	Rorug02G0106100 Rorug02G0106100 Rorug06G0002900 Rorug06G0003500
rosa_samantha	Rh2AG154000 Rh2BG160000 Rh2CG159600 Rh2DG159600 Rh6AG122100 Rh6BG115200 Rh6BG116700 Rh6CG113900 Rh6CG115200 Rh6DG103000 Rh6DG103800
rosa_wichuraiana	Rw2G012040 Rw6G010470 Rw6G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	683
Acc36I	ACCTGC	1 cut(s)	683
AccB1I	GGYRCC	2 cut(s)	310, 352
AccB7I	CCANNNNNTGG	1 cut(s)	576
AccI	GTMKAC	1 cut(s)	632
AccII	CGCG	4 cut(s)	76, 78, 178, 253
AccIII	TCCGGA	2 cut(s)	139, 376
AclWI	GGATC	1 cut(s)	266
AcoI	YGGCCR	2 cut(s)	522, 559
AcsI	RAATTY	1 cut(s)	372
AcvI	CACGTG	2 cut(s)	86, 238
AcyI	GRCGYC	6 cut(s)	69, 90, 159, 173, 326, 353
AfaI	GTAC	3 cut(s)	230, 305, 541
AfiI	CCNNNNNNNGG	1 cut(s)	576
AflIII	ACRYGT	1 cut(s)	235
AgsI	TTSAA	1 cut(s)	655
AluBI	AGCT	4 cut(s)	247, 575, 644, 790
AluI	AGCT	4 cut(s)	247, 575, 644, 790
Alw26I	GTCTC	2 cut(s)	169, 311
AlwI	GGATC	1 cut(s)	266
Aor13HI	TCCGGA	2 cut(s)	139, 376
AoxI	GGCC	2 cut(s)	522, 559
ApeKI	GCWGC	3 cut(s)	18, 444, 773
ApoI	RAATTY	1 cut(s)	372
AspLEI	GCGC	5 cut(s)	78, 80, 253, 355, 457
AspS9I	GGNCC	1 cut(s)	40
AsuC2I	CCSGG	1 cut(s)	526
AsuII	TTCGAA	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	561
BanI	GGYRCC	2 cut(s)	310, 352
BanII	GRGCYC	1 cut(s)	747
BbrPI	CACGTG	2 cut(s)	86, 238
BbsI	GAAGAC	1 cut(s)	72
BbvI	GCAGC	3 cut(s)	5, 431, 785
BccI	CCATC	5 cut(s)	362, 391, 404, 652, 704
BceAI	ACGGC	2 cut(s)	146, 292
BcnI	CCSGG	1 cut(s)	526
BcoDI	GTCTC	2 cut(s)	169, 311
BfoI	RGCGCY	1 cut(s)	356
BfuAI	ACCTGC	1 cut(s)	683
Bme1390I	CCNGG	1 cut(s)	526
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	3 cut(s)	42, 312, 354
BmrFI	CCNGG	1 cut(s)	526
BmsI	GCATC	1 cut(s)	763
BpiI	GAAGAC	1 cut(s)	72
BpmI	CTGGAG	2 cut(s)	130, 359
Bpu14I	TTCGAA	1 cut(s)	359
BpuEI	CTTGAG	1 cut(s)	700
BpuMI	CCSGG	1 cut(s)	526
BsaAI	YACGTR	2 cut(s)	86, 238
BsaBI	GATNNNNATC	1 cut(s)	209
BsaHI	GRCGYC	6 cut(s)	69, 90, 159, 173, 326, 353
BsaJI	CCNNGG	2 cut(s)	105, 604
BsaWI	WCCGGW	3 cut(s)	139, 376, 482
Bsc4I	CCNNNNNNNGG	1 cut(s)	576
Bse118I	RCCGGY	1 cut(s)	520
Bse8I	GATNNNNATC	1 cut(s)	209
BseAI	TCCGGA	2 cut(s)	139, 376
BseDI	CCNNGG	2 cut(s)	105, 604
BseGI	GGATG	2 cut(s)	370, 415
BseJI	GATNNNNATC	1 cut(s)	209
BseLI	CCNNNNNNNGG	1 cut(s)	576
BseMII	CTCAG	2 cut(s)	563, 678
BsePI	GCGCGC	1 cut(s)	76
BseRI	GAGGAG	1 cut(s)	257
BseX3I	CGGCCG	1 cut(s)	522
BseXI	GCAGC	3 cut(s)	5, 431, 785
BsgI	GTGCAG	1 cut(s)	711
Bsh1236I	CGCG	4 cut(s)	76, 78, 178, 253
Bsh1285I	CGRYCG	3 cut(s)	99, 483, 525
BshFI	GGCC	2 cut(s)	524, 561
BshNI	GGYRCC	2 cut(s)	310, 352
BsiEI	CGRYCG	3 cut(s)	99, 483, 525
BsiSI	CCGG	8 cut(s)	140, 314, 329, 377, 483, 513, 521, 525
BslFI	GGGAC	3 cut(s)	8, 26, 559
BslI	CCNNNNNNNGG	1 cut(s)	576
BsmAI	GTCTC	2 cut(s)	169, 311
BsmBI	CGTCTC	2 cut(s)	169, 311
BsmFI	GGGAC	3 cut(s)	8, 26, 559
BsmI	GAATGC	1 cut(s)	615
BsnI	GGCC	2 cut(s)	524, 561
Bsp119I	TTCGAA	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	747
Bsp13I	TCCGGA	2 cut(s)	139, 376
Bsp1407I	TGTACA	1 cut(s)	303
Bsp143I	GATC	2 cut(s)	96, 258
Bsp19I	CCATGG	1 cut(s)	604
BspANI	GGCC	2 cut(s)	524, 561
BspCNI	CTCAG	2 cut(s)	562, 677
BspEI	TCCGGA	2 cut(s)	139, 376
BspFNI	CGCG	4 cut(s)	76, 78, 178, 253
BspLI	GGNNCC	3 cut(s)	42, 312, 354
BspMI	ACCTGC	1 cut(s)	683
BspPI	GGATC	1 cut(s)	266
BspT104I	TTCGAA	1 cut(s)	359
BspT107I	GGYRCC	2 cut(s)	310, 352
BsrFI	RCCGGY	1 cut(s)	520
BsrGI	TGTACA	1 cut(s)	303
BssAI	RCCGGY	1 cut(s)	520
BssECI	CCNNGG	2 cut(s)	105, 604
BssHII	GCGCGC	1 cut(s)	76
BssMI	GATC	2 cut(s)	96, 258
BssNAI	GTATAC	1 cut(s)	633
BssNI	GRCGYC	6 cut(s)	69, 90, 159, 173, 326, 353
BssT1I	CCWWGG	1 cut(s)	604
Bst1107I	GTATAC	1 cut(s)	633
BstACI	GRCGYC	6 cut(s)	69, 90, 159, 173, 326, 353
BstAUI	TGTACA	1 cut(s)	303
BstBAI	YACGTR	2 cut(s)	86, 238
BstBI	TTCGAA	1 cut(s)	359
BstC8I	GCNNGC	6 cut(s)	78, 249, 522, 706, 747, 792
BstDEI	CTNAG	2 cut(s)	549, 664
BstDSI	CCRYGG	1 cut(s)	604
BstF5I	GGATG	2 cut(s)	370, 415
BstFNI	CGCG	4 cut(s)	76, 78, 178, 253
BstH2I	RGCGCY	1 cut(s)	356
BstHHI	GCGC	5 cut(s)	78, 80, 253, 355, 457
BstKTI	GATC	2 cut(s)	99, 261
BstMAI	GTCTC	2 cut(s)	169, 311
BstMBI	GATC	2 cut(s)	96, 258
BstMCI	CGRYCG	3 cut(s)	99, 483, 525
BstMWI	GCNNNNNNNGC	8 cut(s)	27, 77, 98, 319, 350, 398, 581, 751
BstSCI	CCNGG	1 cut(s)	524
BstUI	CGCG	4 cut(s)	76, 78, 178, 253
BstV1I	GCAGC	3 cut(s)	5, 431, 785
BstV2I	GAAGAC	1 cut(s)	72
BstZ17I	GTATAC	1 cut(s)	633
BstZI	CGGCCG	1 cut(s)	522
BsuRI	GGCC	2 cut(s)	524, 561
BtgI	CCRYGG	1 cut(s)	604
BtgZI	GCGATG	2 cut(s)	359, 723
BtsCI	GGATG	2 cut(s)	370, 415
BveI	ACCTGC	1 cut(s)	683
Cac8I	GCNNGC	6 cut(s)	78, 249, 522, 706, 747, 792
CfoI	GCGC	5 cut(s)	78, 80, 253, 355, 457
Cfr10I	RCCGGY	1 cut(s)	520
Cfr13I	GGNCC	1 cut(s)	40
CseI	GACGC	8 cut(s)	10, 77, 98, 162, 167, 167, 328, 334
Csp6I	GTAC	3 cut(s)	229, 304, 540
CviAII	CATG	2 cut(s)	448, 605
CviQI	GTAC	3 cut(s)	229, 304, 540
DdeI	CTNAG	2 cut(s)	549, 664
DinI	GGCGCC	1 cut(s)	354
DpnI	GATC	2 cut(s)	98, 260
DpnII	GATC	2 cut(s)	96, 258
EaeI	YGGCCR	2 cut(s)	522, 559
EagI	CGGCCG	1 cut(s)	522
EciI	GGCGGA	3 cut(s)	106, 407, 422
EclXI	CGGCCG	1 cut(s)	522
Eco130I	CCWWGG	1 cut(s)	604
Eco24I	GRGCYC	1 cut(s)	747
Eco47I	GGWCC	1 cut(s)	40
Eco52I	CGGCCG	1 cut(s)	522
Eco72I	CACGTG	2 cut(s)	86, 238
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	372
EcoT14I	CCWWGG	1 cut(s)	604
EcoT38I	GRGCYC	1 cut(s)	747
EgeI	GGCGCC	1 cut(s)	354
EheI	GGCGCC	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	604
Esp3I	CGTCTC	2 cut(s)	169, 311
FaeI	CATG	2 cut(s)	451, 608
FaiI	YATR	8 cut(s)	441, 449, 606, 633, 685, 687, 768, 770
FaqI	GGGAC	3 cut(s)	8, 26, 559
FatI	CATG	2 cut(s)	447, 604
FauNDI	CATATG	1 cut(s)	685
FblI	GTMKAC	1 cut(s)	632
FokI	GGATG	2 cut(s)	377, 422
FriOI	GRGCYC	1 cut(s)	747
GlaI	GCGC	5 cut(s)	77, 79, 252, 354, 456
GsuI	CTGGAG	2 cut(s)	130, 359
HaeII	RGCGCY	1 cut(s)	356
HaeIII	GGCC	2 cut(s)	524, 561
HapII	CCGG	8 cut(s)	140, 314, 329, 377, 483, 513, 521, 525
HgaI	GACGC	8 cut(s)	10, 77, 98, 162, 167, 167, 328, 334
HhaI	GCGC	5 cut(s)	78, 80, 253, 355, 457
Hin1I	GRCGYC	6 cut(s)	69, 90, 159, 173, 326, 353
Hin1II	CATG	2 cut(s)	451, 608
Hin6I	GCGC	5 cut(s)	76, 78, 251, 353, 455
HinP1I	GCGC	5 cut(s)	76, 78, 251, 353, 455
HindIII	AAGCTT	1 cut(s)	788
HinfI	GANTC	4 cut(s)	143, 476, 547, 662
HpaII	CCGG	8 cut(s)	140, 314, 329, 377, 483, 513, 521, 525
Hpy166II	GTNNAC	2 cut(s)	274, 633
Hpy188I	TCNGA	4 cut(s)	49, 169, 183, 432
Hpy188III	TCNNGA	7 cut(s)	140, 262, 338, 377, 655, 717, 784
Hpy8I	GTNNAC	2 cut(s)	274, 633
Hpy99I	CGWCG	4 cut(s)	53, 161, 178, 436
HpyAV	CCTTC	7 cut(s)	31, 259, 343, 355, 366, 457, 490
HpyCH4IV	ACGT	3 cut(s)	51, 85, 237
HpyCH4V	TGCA	2 cut(s)	447, 692
HpyF10VI	GCNNNNNNNGC	8 cut(s)	27, 77, 98, 319, 350, 398, 581, 751
HpyF3I	CTNAG	2 cut(s)	549, 664
HpySE526I	ACGT	3 cut(s)	51, 85, 237
Hsp92I	GRCGYC	6 cut(s)	69, 90, 159, 173, 326, 353
Hsp92II	CATG	2 cut(s)	451, 608
HspAI	GCGC	5 cut(s)	76, 78, 251, 353, 455
KasI	GGCGCC	1 cut(s)	352
Kpn2I	TCCGGA	2 cut(s)	139, 376
KroI	GCCGGC	1 cut(s)	520
KroNI	GCCGGC	1 cut(s)	522
Kzo9I	GATC	2 cut(s)	96, 258
LmnI	GCTCC	3 cut(s)	244, 499, 641
Lsp1109I	GCAGC	3 cut(s)	5, 431, 785
LweI	GCATC	1 cut(s)	763
MaeII	ACGT	3 cut(s)	51, 85, 237
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	2 cut(s)	98, 260
MboI	GATC	2 cut(s)	96, 258
MboII	GAAGA	2 cut(s)	46, 77
MhlI	GDGCHC	1 cut(s)	747
MlsI	TGGCCA	1 cut(s)	561
MluCI	AATT	4 cut(s)	124, 197, 372, 593
MluNI	TGGCCA	1 cut(s)	561
Mly113I	GGCGCC	1 cut(s)	353
MlyI	GAGTC	4 cut(s)	137, 470, 541, 656
MmeI	TCCRAC	2 cut(s)	72, 455
Mox20I	TGGCCA	1 cut(s)	561
MroI	TCCGGA	2 cut(s)	139, 376
MroNI	GCCGGC	1 cut(s)	520
MscI	TGGCCA	1 cut(s)	561
Msp20I	TGGCCA	1 cut(s)	561
MspI	CCGG	8 cut(s)	140, 314, 329, 377, 483, 513, 521, 525
MspR9I	CCNGG	1 cut(s)	526
Mva1269I	GAATGC	1 cut(s)	615
MvnI	CGCG	4 cut(s)	76, 78, 178, 253
MwoI	GCNNNNNNNGC	8 cut(s)	27, 77, 98, 319, 350, 398, 581, 751
NaeI	GCCGGC	1 cut(s)	522
NarI	GGCGCC	1 cut(s)	353
NciI	CCSGG	1 cut(s)	526
NcoI	CCATGG	1 cut(s)	604
NdeI	CATATG	1 cut(s)	685
NdeII	GATC	2 cut(s)	96, 258
NgoMIV	GCCGGC	1 cut(s)	520
NlaIII	CATG	2 cut(s)	451, 608
NlaIV	GGNNCC	3 cut(s)	42, 312, 354
NmeAIII	GCCGAG	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	86
NspV	TTCGAA	1 cut(s)	359
PaqCI	CACCTGC	1 cut(s)	683
PauI	GCGCGC	1 cut(s)	76
PctI	GAATGC	1 cut(s)	615
PdiI	GCCGGC	1 cut(s)	522
PflFI	GACNNNGTC	2 cut(s)	53, 161
PflMI	CCANNNNNTGG	1 cut(s)	576
Ple19I	CGATCG	1 cut(s)	99
PleI	GAGTC	4 cut(s)	137, 470, 541, 656
PluTI	GGCGCC	1 cut(s)	356
PmaCI	CACGTG	2 cut(s)	86, 238
PmlI	CACGTG	2 cut(s)	86, 238
PpsI	GAGTC	4 cut(s)	137, 470, 541, 656
Ppu21I	YACGTR	2 cut(s)	86, 238
PpuMI	RGGWCCY	1 cut(s)	40
Psp5II	RGGWCCY	1 cut(s)	40
PspCI	CACGTG	2 cut(s)	86, 238
PspN4I	GGNNCC	3 cut(s)	42, 312, 354
PspPI	GGNCC	1 cut(s)	40
PspPPI	RGGWCCY	1 cut(s)	40
PsyI	GACNNNGTC	2 cut(s)	53, 161
PteI	GCGCGC	1 cut(s)	76
PvuI	CGATCG	1 cut(s)	99
RsaI	GTAC	3 cut(s)	230, 305, 541
RsaNI	GTAC	3 cut(s)	229, 304, 540
Sau3AI	GATC	2 cut(s)	96, 258
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	4 cut(s)	137, 470, 541, 656
ScrFI	CCNGG	1 cut(s)	526
SduI	GDGCHC	1 cut(s)	747
SfaNI	GCATC	1 cut(s)	763
SfoI	GGCGCC	1 cut(s)	354
SfuI	TTCGAA	1 cut(s)	359
SinI	GGWCC	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	715
SmoI	CTYRAG	1 cut(s)	715
Sse9I	AATT	4 cut(s)	124, 197, 372, 593
SspDI	GGCGCC	1 cut(s)	352
StyD4I	CCNGG	1 cut(s)	524
StyI	CCWWGG	1 cut(s)	604
TaiI	ACGT	3 cut(s)	54, 88, 240
TaqI	TCGA	4 cut(s)	224, 359, 474, 479
TasI	AATT	4 cut(s)	124, 197, 372, 593
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	7 cut(s)	104, 191, 194, 392, 404, 407, 455
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	3 cut(s)	18, 444, 773
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	3 cut(s)	199, 362, 476
TspGWI	ACGGA	1 cut(s)	246
Tth111I	GACNNNGTC	2 cut(s)	53, 161
Van91I	CCANNNNNTGG	1 cut(s)	576
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	1 cut(s)	372
XmiI	GTMKAC	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.