Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001703

Physical Location & Seq

Genomic Coordinates Reverse (-)

562392 .. 564841

Gene Structure 2450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0003500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGGCACAATGATGGATTCGATTCAAACTACCGTCTATTACTGTTGTGTATCAAAGAGTAACCGGATCCTCTATGCATATAGCGGTGGAGATCACGAAATTGAGAATTTGGCTACTTTGTGCTTGGAGAAGGCTCCTCCTTTCCATAAATGGTATATTGAAACCTCGGGTAAGAGGACTTATGGGTTTCTAATTGAAGATGGATATGTTTATTTGACTATTGTCGATCAGAGTCTTGGAACTCCTGGGGTTCTTCAGTTTCTAGATCATTTGAGGGACGAGTTCAAGAATATAGACAAGAAGGGTTCAAGGGGAAGTTTGTCGAGTGTGAACTCCGTTGGCATCCAAGAACAGTTGGTTCCTGTTATCAATCGATTGATAACCTCCTTAGAAAGTGTTTCTCAGGTTGGTAGTAATTGGACAGCTGAAACTCACCCATCGCTTCATGCTGGTCTTTCTCCATCACCAGGTACTGCAAACGGACAAATTGAAGTTGCCAGTTCTACAAAAGCGCCTCTACTCGGGAAGTCTAATAAGCAAGAGAAGAAGAAGGCAAAAGATCATGTTATTGCGATGAGAGACATTGAGTTGGAGGAACATAGGAGATCTGCTGACAGAGGAGTCAATCTAGATCCATTGACTTTGGATTCTAATAACCATGGTGTAGCAGGTTCTTCAGTTGCCTTACAAAAGGATTCAGGCTCAATGAGGATTAGATCAGGCTCTCAGAGCATTCGAAAGAAGTGGTGCCGCCAAGTGCGAATTATCCTTGCTATTGATGCGGCTGTTTGTGTAGCACTGCTTGTGATTTGGTTATTGATTTGTCGTGGCATTGAGTGCATCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

282

Amino Acids

31.03

Weight (kDa)

8.62

Isoelectric Point (pI)

50.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36750
fragaria_vesca	FvH4_1g13950 FvH4_2g08230 FvH4_2g08230 FvH4_2g08230
malus_domestica	MD02G1152700.v1.1 MD05G1334200.v1.1 MD10G1081100.v1.1 MD10G1309100.v1.1
prunus_persica	Prupe.4G031000_v2.0.a1 Prupe.4G031000_v2.0.a1 Prupe.7G149400_v2.0.a1 Prupe.8G102400_v2.0.a1
pyrus_communis	pycom02g12050 pycom05g30590 pycom10g06420 pycom10g26050 pycom15g23270
rosa_chinensis	RchiOBHm_Chr2g0102261 RchiOBHm_Chr6g0263041 RchiOBHm_Chr6g0263101
rosa_laevigata	RLG00000014375 RLG00000014383 RLG00000017140
rosa_multiflora	Rmu_co8453355.1_g000001 Rmu_sc0002146.1_g000009 Rmu_sc0002479.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140620 Rroxscaffold_7G00204680 Rroxscaffold_7G00204780
rosa_rugosa	Rorug02G0106100 Rorug02G0106100 Rorug06G0002900 Rorug06G0003500
rosa_samantha	Rh2AG154000 Rh2BG160000 Rh2CG159600 Rh2DG159600 Rh6AG122100 Rh6BG115200 Rh6BG116700 Rh6CG113900 Rh6CG115200 Rh6DG103000 Rh6DG103800
rosa_wichuraiana	Rw2G012040 Rw6G010470 Rw6G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	620
Acc36I	ACCTGC	1 cut(s)	659
AccB1I	GGYRCC	1 cut(s)	747
AciI	CCGC	3 cut(s)	84, 751, 782
AclWI	GGATC	3 cut(s)	61, 74, 626
AcsI	RAATTY	1 cut(s)	106
AcuI	CTGAAG	2 cut(s)	239, 660
AfaI	GTAC	1 cut(s)	472
AfiI	CCNNNNNNNGG	2 cut(s)	467, 521
AgsI	TTSAA	6 cut(s)	26, 161, 197, 286, 309, 491
AjnI	CCWGG	2 cut(s)	244, 466
AluBI	AGCT	1 cut(s)	425
AluI	AGCT	1 cut(s)	425
Alw26I	GTCTC	1 cut(s)	573
AlwI	GGATC	3 cut(s)	61, 74, 626
AlwNI	CAGNNNCTG	1 cut(s)	473
Ama87I	CYCGRG	2 cut(s)	166, 521
ApoI	RAATTY	1 cut(s)	106
AspLEI	GCGC	1 cut(s)	514
AsuHPI	GGTGA	2 cut(s)	425, 456
AsuII	TTCGAA	1 cut(s)	736
AvaI	CYCGRG	2 cut(s)	166, 521
BaeGI	GKGCMC	1 cut(s)	8
BamHI	GGATCC	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	747
BccI	CCATC	4 cut(s)	7, 194, 445, 469
BciT130I	CCWGG	2 cut(s)	246, 468
BcoDI	GTCTC	1 cut(s)	573
BfaI	CTAG	2 cut(s)	263, 629
BfoI	RGCGCY	1 cut(s)	515
BfuAI	ACCTGC	1 cut(s)	659
BglII	AGATCT	1 cut(s)	605
BisI	GCNGC	2 cut(s)	751, 783
BlsI	GCNGC	2 cut(s)	752, 784
Bme1390I	CCNGG	2 cut(s)	246, 468
BmeT110I	CYCGRG	2 cut(s)	166, 521
BmiI	GGNNCC	4 cut(s)	68, 135, 360, 749
BmrFI	CCNGG	2 cut(s)	246, 468
BmsI	GCATC	2 cut(s)	351, 769
BoxI	GACNNNNGTC	1 cut(s)	221
Bpu14I	TTCGAA	1 cut(s)	736
Bsa29I	ATCGAT	1 cut(s)	373
BsaJI	CCNNGG	3 cut(s)	165, 245, 658
BsaWI	WCCGGW	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	2 cut(s)	467, 521
Bse1I	ACTGG	1 cut(s)	498
BseBI	CCWGG	2 cut(s)	246, 468
BseCI	ATCGAT	1 cut(s)	373
BseDI	CCNNGG	3 cut(s)	165, 245, 658
BseGI	GGATG	2 cut(s)	342, 840
BseLI	CCNNNNNNNGG	2 cut(s)	467, 521
BseMII	CTCAG	2 cut(s)	416, 740
BseNI	ACTGG	1 cut(s)	498
BseRI	GAGGAG	2 cut(s)	126, 633
BseSI	GKGCMC	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	747
BshVI	ATCGAT	1 cut(s)	373
BsiHKCI	CYCGRG	2 cut(s)	166, 521
BsiSI	CCGG	1 cut(s)	64
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	2 cut(s)	467, 521
BsmAI	GTCTC	1 cut(s)	573
BsmFI	GGGAC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	732
BsoBI	CYCGRG	2 cut(s)	166, 521
Bsp119I	TTCGAA	1 cut(s)	736
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	8 cut(s)	66, 91, 226, 265, 559, 605, 631, 716
Bsp19I	CCATGG	1 cut(s)	658
BspACI	CCGC	3 cut(s)	84, 751, 782
BspCNI	CTCAG	2 cut(s)	415, 739
BspDI	ATCGAT	1 cut(s)	373
BspLI	GGNNCC	4 cut(s)	68, 135, 360, 749
BspMI	ACCTGC	1 cut(s)	659
BspPI	GGATC	3 cut(s)	61, 74, 626
BspT104I	TTCGAA	1 cut(s)	736
BspT107I	GGYRCC	1 cut(s)	747
BsrI	ACTGG	1 cut(s)	498
BssECI	CCNNGG	3 cut(s)	165, 245, 658
BssMI	GATC	8 cut(s)	66, 91, 226, 265, 559, 605, 631, 716
BssT1I	CCWWGG	1 cut(s)	658
Bst2UI	CCWGG	2 cut(s)	246, 468
Bst4CI	ACNGT	3 cut(s)	34, 44, 354
BstAPI	GCANNNNNTGC	1 cut(s)	837
BstBI	TTCGAA	1 cut(s)	736
BstDEI	CTNAG	3 cut(s)	388, 402, 726
BstDSI	CCRYGG	1 cut(s)	658
BstF5I	GGATG	2 cut(s)	342, 840
BstH2I	RGCGCY	1 cut(s)	515
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	8 cut(s)	69, 94, 229, 268, 562, 608, 634, 719
BstMAI	GTCTC	1 cut(s)	573
BstMBI	GATC	8 cut(s)	66, 91, 226, 265, 559, 605, 631, 716
BstMWI	GCNNNNNNNGC	3 cut(s)	729, 779, 837
BstNI	CCWGG	2 cut(s)	246, 468
BstPAI	GACNNNNGTC	1 cut(s)	221
BstSCI	CCNGG	2 cut(s)	244, 466
BstSLI	GKGCMC	1 cut(s)	8
BstX2I	RGATCY	3 cut(s)	66, 605, 631
BstYI	RGATCY	3 cut(s)	66, 605, 631
Bsu15I	ATCGAT	1 cut(s)	373
BsuTUI	ATCGAT	1 cut(s)	373
BtgI	CCRYGG	1 cut(s)	658
BtgZI	GCGATG	2 cut(s)	423, 587
BtsCI	GGATG	2 cut(s)	342, 840
BtsI	GCAGTG	1 cut(s)	797
BtsIMutI	CAGTG	1 cut(s)	797
BveI	ACCTGC	1 cut(s)	659
CaiI	CAGNNNCTG	1 cut(s)	473
CfoI	GCGC	1 cut(s)	514
ClaI	ATCGAT	1 cut(s)	373
CsiI	ACCWGGT	1 cut(s)	466
Csp6I	GTAC	1 cut(s)	471
CviAII	CATG	3 cut(s)	446, 563, 659
CviJI	RGCY	6 cut(s)	113, 134, 425, 702, 723, 785
CviKI_1	RGCY	6 cut(s)	113, 134, 425, 702, 723, 785
CviQI	GTAC	1 cut(s)	471
DdeI	CTNAG	3 cut(s)	388, 402, 726
DpnI	GATC	8 cut(s)	68, 93, 228, 267, 561, 607, 633, 718
DpnII	GATC	8 cut(s)	66, 91, 226, 265, 559, 605, 631, 716
DrdI	GACNNNNNNGTC	1 cut(s)	620
DseDI	GACNNNNNNGTC	1 cut(s)	620
Eco130I	CCWWGG	1 cut(s)	658
Eco57I	CTGAAG	2 cut(s)	239, 660
Eco88I	CYCGRG	2 cut(s)	166, 521
EcoRII	CCWGG	2 cut(s)	244, 466
EcoT14I	CCWWGG	1 cut(s)	658
EcoT22I	ATGCAT	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	658
FaeI	CATG	3 cut(s)	449, 566, 662
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	3 cut(s)	445, 562, 658
Fnu4HI	GCNGC	2 cut(s)	751, 783
FokI	GGATG	2 cut(s)	329, 827
Fsp4HI	GCNGC	2 cut(s)	751, 783
FspBI	CTAG	2 cut(s)	263, 629
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	2 cut(s)	751, 783
HaeII	RGCGCY	1 cut(s)	515
HapII	CCGG	1 cut(s)	64
HhaI	GCGC	1 cut(s)	514
Hin1II	CATG	3 cut(s)	449, 566, 662
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HinfI	GANTC	6 cut(s)	17, 22, 232, 621, 647, 695
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	2 cut(s)	425, 456
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	2 cut(s)	231, 729
Hpy188III	TCNNGA	5 cut(s)	95, 263, 286, 523, 629
Hpy8I	GTNNAC	1 cut(s)	331
HpyAV	CCTTC	3 cut(s)	124, 295, 544
HpyCH4III	ACNGT	3 cut(s)	34, 44, 354
HpyCH4V	TGCA	3 cut(s)	77, 476, 840
HpyF10VI	GCNNNNNNNGC	3 cut(s)	729, 779, 837
HpyF3I	CTNAG	3 cut(s)	388, 402, 726
Hsp92II	CATG	3 cut(s)	449, 566, 662
HspAI	GCGC	1 cut(s)	512
Kzo9I	GATC	8 cut(s)	66, 91, 226, 265, 559, 605, 631, 716
LmnI	GCTCC	1 cut(s)	139
LweI	GCATC	2 cut(s)	351, 769
MabI	ACCWGGT	1 cut(s)	466
MaeI	CTAG	2 cut(s)	263, 629
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	8 cut(s)	68, 93, 228, 267, 561, 607, 633, 718
MboI	GATC	8 cut(s)	66, 91, 226, 265, 559, 605, 631, 716
MboII	GAAGA	5 cut(s)	209, 245, 556, 559, 666
MflI	RGATCY	3 cut(s)	66, 605, 631
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	6 cut(s)	99, 106, 192, 415, 486, 762
MlyI	GAGTC	2 cut(s)	241, 630
MmeI	TCCRAC	1 cut(s)	570
Mph1103I	ATGCAT	1 cut(s)	79
MslI	CAYNNNNRTG	1 cut(s)	11
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	1 cut(s)	64
MspR9I	CCNGG	2 cut(s)	246, 468
Mva1269I	GAATGC	1 cut(s)	732
MvaI	CCWGG	2 cut(s)	246, 468
MwoI	GCNNNNNNNGC	3 cut(s)	729, 779, 837
NcoI	CCATGG	1 cut(s)	658
NdeII	GATC	8 cut(s)	66, 91, 226, 265, 559, 605, 631, 716
NlaIII	CATG	3 cut(s)	449, 566, 662
NlaIV	GGNNCC	4 cut(s)	68, 135, 360, 749
NsiI	ATGCAT	1 cut(s)	79
NspV	TTCGAA	1 cut(s)	736
PctI	GAATGC	1 cut(s)	732
PfeI	GAWTC	4 cut(s)	17, 22, 647, 695
PkrI	GCNGC	2 cut(s)	752, 784
PleI	GAGTC	2 cut(s)	240, 629
PpsI	GAGTC	2 cut(s)	240, 629
PshAI	GACNNNNGTC	1 cut(s)	221
Psp6I	CCWGG	2 cut(s)	244, 466
PspGI	CCWGG	2 cut(s)	244, 466
PspN4I	GGNNCC	4 cut(s)	68, 135, 360, 749
PstNI	CAGNNNCTG	1 cut(s)	473
PsuI	RGATCY	3 cut(s)	66, 605, 631
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	1 cut(s)	472
RsaNI	GTAC	1 cut(s)	471
RseI	CAYNNNNRTG	1 cut(s)	11
SatI	GCNGC	2 cut(s)	751, 783
Sau3AI	GATC	8 cut(s)	66, 91, 226, 265, 559, 605, 631, 716
SchI	GAGTC	2 cut(s)	241, 630
ScrFI	CCNGG	2 cut(s)	246, 468
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	6 cut(s)	167, 386, 408, 427, 472, 673
SexAI	ACCWGGT	1 cut(s)	466
SfaNI	GCATC	2 cut(s)	351, 769
SfuI	TTCGAA	1 cut(s)	736
SmiMI	CAYNNNNRTG	1 cut(s)	11
Sse9I	AATT	6 cut(s)	99, 106, 192, 415, 486, 762
SsiI	CCGC	3 cut(s)	84, 751, 782
SspMI	CTAG	2 cut(s)	263, 629
StyD4I	CCNGG	2 cut(s)	244, 466
StyI	CCWWGG	1 cut(s)	658
TaaI	ACNGT	3 cut(s)	34, 44, 354
TaqI	TCGA	5 cut(s)	20, 225, 323, 373, 736
TasI	AATT	6 cut(s)	99, 106, 192, 415, 486, 762
TauI	GCSGC	2 cut(s)	753, 785
TfiI	GAWTC	4 cut(s)	17, 22, 647, 695
TscAI	CASTG	1 cut(s)	804
TspDTI	ATGAA	1 cut(s)	434
TspGWI	ACGGA	3 cut(s)	325, 495, 833
TspRI	CASTG	1 cut(s)	804
XapI	RAATTY	1 cut(s)	106
XbaI	TCTAGA	2 cut(s)	262, 628
XspI	CTAG	2 cut(s)	263, 629
Zsp2I	ATGCAT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.