Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002146.1

Orthogroup ID

OG0001703

Physical Location & Seq

Genomic Coordinates Forward (+)

57620 .. 59556

Gene Structure 1937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002146.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atgggtaaaggaggtggctgtgtgcccagcaagaataggccaccggcaggcgttgccggcgctgatcttccgaacccaaaaagcgatgatcttgtttcagaccaaaaccaaaaccaaacccaaaccacagaaacaacaaacccaattaaggatgaaggggttgcagagaaaaagcaacagaggaagaagctgagggttttcatagtgttttactcaatgtatgggcatgtggagctgttggccagagagattaagaaaggggttgattccactgatggggttgaaggggttctgtaccgggttccggaaacgctgtcgtctgaggtgttggagcagatgaaagtgcccaagaaggatgatcatggggtgcctgtgatagtgcctgagagactggtggaggctgatggggtgttgttcgggtttcctacccggtatgggtcaatggctgctcagatgaaggcgtttttcgactccacgggggagctttggagggagcagaagcttgcaggggtgcctgctgggttctttgtgagtactggcacacagggtggtggacaggagactaatgcttggacagccattactcagttagcacaccatggaatgatatatgttccaattggctacacctttggtgctggaatgttccaaatggactcccttagaggagggtctccatatggttctggggttctttctggagatggcacaagggcaccaactgagacagagctcgctcttgcagagcatcacggaaagtacatggctactattgtcaagaagcttgtacattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

264

Amino Acids

28.47

Weight (kDa)

6.39

Isoelectric Point (pI)

29.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36750
fragaria_vesca	FvH4_1g13950 FvH4_2g08230 FvH4_2g08230 FvH4_2g08230
malus_domestica	MD02G1152700.v1.1 MD05G1334200.v1.1 MD10G1081100.v1.1 MD10G1309100.v1.1
prunus_persica	Prupe.4G031000_v2.0.a1 Prupe.4G031000_v2.0.a1 Prupe.7G149400_v2.0.a1 Prupe.8G102400_v2.0.a1
pyrus_communis	pycom02g12050 pycom05g30590 pycom10g06420 pycom10g26050 pycom15g23270
rosa_chinensis	RchiOBHm_Chr2g0102261 RchiOBHm_Chr6g0263041 RchiOBHm_Chr6g0263101
rosa_laevigata	RLG00000014375 RLG00000014383 RLG00000017140
rosa_multiflora	Rmu_co8453355.1_g000001 Rmu_sc0002146.1_g000009 Rmu_sc0002479.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140620 Rroxscaffold_7G00204680 Rroxscaffold_7G00204780
rosa_rugosa	Rorug02G0106100 Rorug02G0106100 Rorug06G0002900 Rorug06G0003500
rosa_samantha	Rh2AG154000 Rh2BG160000 Rh2CG159600 Rh2DG159600 Rh6AG122100 Rh6BG115200 Rh6BG116700 Rh6CG113900 Rh6CG115200 Rh6DG103000 Rh6DG103800
rosa_wichuraiana	Rw2G012040 Rw6G010470 Rw6G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	367, 511, 715
AccIII	TCCGGA	1 cut(s)	304
AcoI	YGGCCR	1 cut(s)	240
AdeI	CACNNNGTG	1 cut(s)	548
AfaI	GTAC	4 cut(s)	296, 535, 761, 789
AfiI	CCNNNNNNNGG	5 cut(s)	47, 148, 276, 304, 435
AgsI	TTSAA	1 cut(s)	284
AluBI	AGCT	6 cut(s)	190, 235, 484, 502, 733, 784
AluI	AGCT	6 cut(s)	190, 235, 484, 502, 733, 784
Alw21I	GWGCWC	1 cut(s)	735
Alw26I	GTCTC	4 cut(s)	382, 554, 678, 719
Aor13HI	TCCGGA	1 cut(s)	304
AoxI	GGCC	2 cut(s)	38, 240
ApeKI	GCWGC	1 cut(s)	446
Asp700I	GAANNNNTTC	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	62
AsuC2I	CCSGG	2 cut(s)	299, 430
BaeGI	GKGCMC	3 cut(s)	27, 348, 718
BalI	TGGCCA	1 cut(s)	242
BanI	GGYRCC	3 cut(s)	367, 511, 715
BanII	GRGCYC	1 cut(s)	735
Bbv12I	GWGCWC	1 cut(s)	735
BbvCI	CCTCAGC	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	3 cut(s)	269, 398, 698
BclI	TGATCA	1 cut(s)	358
BcnI	CCSGG	2 cut(s)	299, 430
BcoDI	GTCTC	4 cut(s)	382, 554, 678, 719
BfoI	RGCGCY	1 cut(s)	63
BisI	GCNGC	1 cut(s)	447
BlsI	GCNGC	1 cut(s)	448
BmcAI	AGTACT	1 cut(s)	535
Bme1390I	CCNGG	2 cut(s)	299, 430
BmiI	GGNNCC	4 cut(s)	303, 369, 513, 717
BmrFI	CCNGG	2 cut(s)	299, 430
BmsI	GCATC	1 cut(s)	757
BpmI	CTGGAG	1 cut(s)	720
Bpu10I	CCTNAGC	1 cut(s)	191
BpuMI	CCSGG	2 cut(s)	299, 430
BsaI	GGTCTC	1 cut(s)	678
BsaJI	CCNNGG	2 cut(s)	474, 598
BsaWI	WCCGGW	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	5 cut(s)	47, 148, 276, 304, 435
Bse118I	RCCGGY	2 cut(s)	43, 56
Bse1I	ACTGG	2 cut(s)	396, 541
BseAI	TCCGGA	1 cut(s)	304
BseDI	CCNNGG	2 cut(s)	474, 598
BseGI	GGATG	2 cut(s)	157, 361
BseLI	CCNNNNNNNGG	5 cut(s)	47, 148, 276, 304, 435
BseMII	CTCAG	6 cut(s)	182, 312, 375, 464, 599, 714
BseNI	ACTGG	2 cut(s)	396, 541
BseRI	GAGGAG	1 cut(s)	681
BseSI	GKGCMC	3 cut(s)	27, 348, 718
BseXI	GCAGC	1 cut(s)	433
BseYI	CCCAGC	2 cut(s)	26, 518
BshFI	GGCC	2 cut(s)	40, 242
BshNI	GGYRCC	3 cut(s)	367, 511, 715
BsiHKAI	GWGCWC	1 cut(s)	735
BsiSI	CCGG	5 cut(s)	44, 57, 298, 305, 430
BslI	CCNNNNNNNGG	5 cut(s)	47, 148, 276, 304, 435
BsmAI	GTCTC	4 cut(s)	382, 554, 678, 719
BsnI	GGCC	2 cut(s)	40, 242
Bso31I	GGTCTC	1 cut(s)	678
Bsp1286I	GDGCHC	4 cut(s)	27, 348, 718, 735
Bsp13I	TCCGGA	1 cut(s)	304
Bsp1407I	TGTACA	1 cut(s)	787
Bsp143I	GATC	3 cut(s)	64, 88, 358
Bsp19I	CCATGG	1 cut(s)	598
BspANI	GGCC	2 cut(s)	40, 242
BspCNI	CTCAG	6 cut(s)	183, 313, 376, 463, 598, 715
BspEI	TCCGGA	1 cut(s)	304
BspLI	GGNNCC	4 cut(s)	303, 369, 513, 717
BspT107I	GGYRCC	3 cut(s)	367, 511, 715
BspTNI	GGTCTC	1 cut(s)	678
BsrFI	RCCGGY	2 cut(s)	43, 56
BsrGI	TGTACA	1 cut(s)	787
BsrI	ACTGG	2 cut(s)	396, 541
BssAI	RCCGGY	2 cut(s)	43, 56
BssECI	CCNNGG	2 cut(s)	474, 598
BssMI	GATC	3 cut(s)	64, 88, 358
BssT1I	CCWWGG	1 cut(s)	598
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstAUI	TGTACA	1 cut(s)	787
BstC8I	GCNNGC	5 cut(s)	49, 58, 504, 516, 735
BstDEI	CTNAG	7 cut(s)	191, 321, 384, 450, 585, 662, 723
BstDSI	CCRYGG	2 cut(s)	474, 598
BstF5I	GGATG	2 cut(s)	157, 361
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	3 cut(s)	67, 91, 361
BstMAI	GTCTC	4 cut(s)	382, 554, 678, 719
BstMBI	GATC	3 cut(s)	64, 88, 358
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 57, 232, 575
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	297, 428
BstSLI	GKGCMC	3 cut(s)	27, 348, 718
BstV1I	GCAGC	1 cut(s)	433
BsuRI	GGCC	2 cut(s)	40, 242
BtgI	CCRYGG	2 cut(s)	474, 598
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	157, 361
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	5 cut(s)	49, 58, 504, 516, 735
CfoI	GCGC	1 cut(s)	62
Cfr10I	RCCGGY	2 cut(s)	43, 56
Csp6I	GTAC	4 cut(s)	295, 534, 760, 788
CviAII	CATG	4 cut(s)	227, 362, 599, 763
CviQI	GTAC	4 cut(s)	295, 534, 760, 788
DdeI	CTNAG	7 cut(s)	191, 321, 384, 450, 585, 662, 723
DpnI	GATC	3 cut(s)	66, 90, 360
DpnII	GATC	3 cut(s)	64, 88, 358
DraIII	CACNNNGTG	1 cut(s)	548
EaeI	YGGCCR	1 cut(s)	240
Ecl136II	GAGCTC	1 cut(s)	733
Eco130I	CCWWGG	1 cut(s)	598
Eco24I	GRGCYC	1 cut(s)	735
Eco31I	GGTCTC	1 cut(s)	678
Eco53kI	GAGCTC	1 cut(s)	733
EcoICRI	GAGCTC	1 cut(s)	733
EcoT14I	CCWWGG	1 cut(s)	598
EcoT38I	GRGCYC	1 cut(s)	735
ErhI	CCWWGG	1 cut(s)	598
FaeI	CATG	4 cut(s)	230, 365, 602, 766
FatI	CATG	4 cut(s)	226, 361, 598, 762
FauNDI	CATATG	1 cut(s)	679
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	1 cut(s)	447
FokI	GGATG	2 cut(s)	164, 368
FriOI	GRGCYC	1 cut(s)	735
Fsp4HI	GCNGC	1 cut(s)	447
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	1 cut(s)	447
GsaI	CCCAGC	2 cut(s)	30, 522
GsuI	CTGGAG	1 cut(s)	720
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	2 cut(s)	40, 242
HapII	CCGG	5 cut(s)	44, 57, 298, 305, 430
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	4 cut(s)	230, 365, 602, 766
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HindIII	AAGCTT	2 cut(s)	500, 782
HinfI	GANTC	3 cut(s)	266, 470, 656
HpaII	CCGG	5 cut(s)	44, 57, 298, 305, 430
Hpy166II	GTNNAC	1 cut(s)	554
Hpy188I	TCNGA	4 cut(s)	72, 100, 322, 453
Hpy188III	TCNNGA	3 cut(s)	305, 699, 778
Hpy8I	GTNNAC	1 cut(s)	554
HpyAV	CCTTC	4 cut(s)	149, 278, 346, 451
HpyCH4V	TGCA	3 cut(s)	164, 506, 743
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 57, 232, 575
HpyF3I	CTNAG	7 cut(s)	191, 321, 384, 450, 585, 662, 723
Hsp92II	CATG	4 cut(s)	230, 365, 602, 766
HspAI	GCGC	1 cut(s)	60
Kpn2I	TCCGGA	1 cut(s)	304
KroI	GCCGGC	1 cut(s)	56
KroNI	GCCGGC	1 cut(s)	58
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	3 cut(s)	64, 88, 358
LmnI	GCTCC	4 cut(s)	232, 331, 481, 493
Lsp1109I	GCAGC	1 cut(s)	433
LweI	GCATC	1 cut(s)	757
MalI	GATC	3 cut(s)	66, 90, 360
MboI	GATC	3 cut(s)	64, 88, 358
MboII	GAAGA	2 cut(s)	59, 196
MfeI	CAATTG	1 cut(s)	618
MhlI	GDGCHC	4 cut(s)	27, 348, 718, 735
MlsI	TGGCCA	1 cut(s)	242
MluCI	AATT	2 cut(s)	144, 618
MluNI	TGGCCA	1 cut(s)	242
MlyI	GAGTC	2 cut(s)	464, 650
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	8 cut(s)	5, 174, 186, 316, 391, 483, 659, 662
Mox20I	TGGCCA	1 cut(s)	242
MroI	TCCGGA	1 cut(s)	304
MroNI	GCCGGC	1 cut(s)	56
MroXI	GAANNNNTTC	1 cut(s)	288
MscI	TGGCCA	1 cut(s)	242
MseI	TTAA	2 cut(s)	147, 252
Msp20I	TGGCCA	1 cut(s)	242
MspI	CCGG	5 cut(s)	44, 57, 298, 305, 430
MspR9I	CCNGG	2 cut(s)	299, 430
MunI	CAATTG	1 cut(s)	618
MwoI	GCNNNNNNNGC	4 cut(s)	53, 57, 232, 575
NaeI	GCCGGC	1 cut(s)	58
NciI	CCSGG	2 cut(s)	299, 430
NcoI	CCATGG	1 cut(s)	598
NdeI	CATATG	1 cut(s)	679
NdeII	GATC	3 cut(s)	64, 88, 358
NgoMIV	GCCGGC	1 cut(s)	56
NlaIII	CATG	4 cut(s)	230, 365, 602, 766
NlaIV	GGNNCC	4 cut(s)	303, 369, 513, 717
NspI	RCATGY	1 cut(s)	230
PdiI	GCCGGC	1 cut(s)	58
PdmI	GAANNNNTTC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	448
PleI	GAGTC	2 cut(s)	464, 650
PpsI	GAGTC	2 cut(s)	464, 650
Psp124BI	GAGCTC	1 cut(s)	735
PspFI	CCCAGC	2 cut(s)	26, 518
PspN4I	GGNNCC	4 cut(s)	303, 369, 513, 717
RsaI	GTAC	4 cut(s)	296, 535, 761, 789
RsaNI	GTAC	4 cut(s)	295, 534, 760, 788
SacI	GAGCTC	1 cut(s)	735
SaqAI	TTAA	2 cut(s)	147, 252
SatI	GCNGC	1 cut(s)	447
Sau3AI	GATC	3 cut(s)	64, 88, 358
ScaI	AGTACT	1 cut(s)	535
SchI	GAGTC	2 cut(s)	464, 650
ScrFI	CCNGG	2 cut(s)	299, 430
SduI	GDGCHC	4 cut(s)	27, 348, 718, 735
SetI	ASST	9 cut(s)	16, 192, 237, 327, 486, 504, 632, 735, 786
SfaNI	GCATC	1 cut(s)	757
Sse9I	AATT	2 cut(s)	144, 618
SstI	GAGCTC	1 cut(s)	735
StyD4I	CCNGG	2 cut(s)	297, 428
StyI	CCWWGG	1 cut(s)	598
TaqI	TCGA	1 cut(s)	468
TasI	AATT	2 cut(s)	144, 618
TatI	WGTACW	3 cut(s)	533, 759, 787
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	2 cut(s)	147, 252
Tru9I	TTAA	2 cut(s)	147, 252
TscAI	CASTG	1 cut(s)	277
TseI	GCWGC	1 cut(s)	446
TspDTI	ATGAA	4 cut(s)	168, 190, 353, 470
TspGWI	ACGGA	1 cut(s)	768
TspRI	CASTG	1 cut(s)	277
XceI	RCATGY	1 cut(s)	230
XmnI	GAANNNNTTC	1 cut(s)	288
ZrmI	AGTACT	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.