Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001703

Physical Location & Seq

Genomic Coordinates Forward (+)

13931170 .. 13933608

Gene Structure 2439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG159600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGGAAAGGGCGGGGGCTGCGTCCCAAGCAAGAAGAAGGTCCCGTCCGGAGTACTCGACGCCGCCGACGACCCCACGCGCGGCTCACGCGACGCGCCTATTCCCGCCGATTCCGCCGCCAATTCCAATGTCGTTCCCGATTCCGGCCAAAACGACGCCATTTCGGAGGCGTCGCATCCGGCGGCGGCGGCGGCGAAATTGAGGATATTTATCGTGTTCTACTCGATGTACGGACACGTGGAGGAGCTGGCGAGGAGGATCAAGAAGGGGGTGGACGGCGTGGAGGGAGTGGAGGGGGTGCTGTACAGGGTGCCGGAGACGCTGACGGCGGAGGTGCTGGAGGCGATGAAGGCGCCGTCCAAGGACGACGGAATTCCGGAGATTTCGGCGGCGGAGTTGGCGGCGGCGGATGGGGTGCTGTTCGGGTTTCCGACGAGGTACGGGTGCATGGCGGCGCAGATGAAGGCGTTTTTCGACTCGACCGGAGGGTTGTGGAAGGAGCAGAGCCTCGCCGGAAAGCCGGCCGGCTTTTTTGTTAGTACTGGGACTCAAGGAGGTGGCCAAGAAACCACAGCTTGGACAGCTATCACCCAGTTAGCACACCATGGAATGCTATTTGTTCCCATTGGGTATACTTTTGGAGCTGGCATGTTCAAGATGGACTCAGTACGAGGCGGTTCTCCATATGGTGCTGGTGTTTTTGCTGGCGATGGCTCAAGACGGCCAAGTGAAACAGAGTTGGGGCTTGCAGAGCATCAAGGGAAGTATATGGCAGCAGTAGTCAAGAAGCTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003955 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0010181 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044464 GO:0048037 GO:0050662 GO:0055114 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

265

Amino Acids

27.49

Weight (kDa)

5.98

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavodoxin_1	PF00258	71 - 203	2.5e-13	Flavodoxin
FMN_red	PF03358	82 - 210	1.1e-12	NADPH-dependent FMN reductase
Flavodoxin_2	PF02525	106 - 187	7.6e-06	Flavodoxin-like fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36750
fragaria_vesca	FvH4_1g13950 FvH4_2g08230 FvH4_2g08230 FvH4_2g08230
malus_domestica	MD02G1152700.v1.1 MD05G1334200.v1.1 MD10G1081100.v1.1 MD10G1309100.v1.1
prunus_persica	Prupe.4G031000_v2.0.a1 Prupe.4G031000_v2.0.a1 Prupe.7G149400_v2.0.a1 Prupe.8G102400_v2.0.a1
pyrus_communis	pycom02g12050 pycom05g30590 pycom10g06420 pycom10g26050 pycom15g23270
rosa_chinensis	RchiOBHm_Chr2g0102261 RchiOBHm_Chr6g0263041 RchiOBHm_Chr6g0263101
rosa_laevigata	RLG00000014375 RLG00000014383 RLG00000017140
rosa_multiflora	Rmu_co8453355.1_g000001 Rmu_sc0002146.1_g000009 Rmu_sc0002479.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140620 Rroxscaffold_7G00204680 Rroxscaffold_7G00204780
rosa_rugosa	Rorug02G0106100 Rorug02G0106100 Rorug06G0002900 Rorug06G0003500
rosa_samantha	Rh2AG154000 Rh2BG160000 Rh2CG159600 Rh2DG159600 Rh6AG122100 Rh6BG115200 Rh6BG116700 Rh6CG113900 Rh6CG115200 Rh6DG103000 Rh6DG103800
rosa_wichuraiana	Rw2G012040 Rw6G010470 Rw6G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	310, 352
AccB7I	CCANNNNNTGG	1 cut(s)	576
AccI	GTMKAC	1 cut(s)	632
AccII	CGCG	4 cut(s)	79, 81, 90, 95
AccIII	TCCGGA	2 cut(s)	47, 376
AclWI	GGATC	1 cut(s)	266
AcoI	YGGCCR	4 cut(s)	145, 522, 559, 722
AcsI	RAATTY	1 cut(s)	372
AcvI	CACGTG	1 cut(s)	238
AcyI	GRCGYC	4 cut(s)	60, 156, 170, 353
AfaI	GTAC	6 cut(s)	54, 230, 305, 440, 541, 669
AfiI	CCNNNNNNNGG	3 cut(s)	80, 143, 576
AflIII	ACRYGT	1 cut(s)	235
AgsI	TTSAA	1 cut(s)	655
AluBI	AGCT	5 cut(s)	247, 575, 584, 644, 790
AluI	AGCT	5 cut(s)	247, 575, 584, 644, 790
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	1 cut(s)	266
Aor13HI	TCCGGA	2 cut(s)	47, 376
AoxI	GGCC	4 cut(s)	145, 522, 559, 722
ApeKI	GCWGC	2 cut(s)	18, 773
ApoI	RAATTY	1 cut(s)	372
AspLEI	GCGC	4 cut(s)	81, 97, 355, 457
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	580
AvaII	GGWCC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	561
BanI	GGYRCC	2 cut(s)	310, 352
BbrPI	CACGTG	1 cut(s)	238
BbvI	GCAGC	2 cut(s)	5, 785
BccI	CCATC	3 cut(s)	404, 652, 704
BceAI	ACGGC	4 cut(s)	292, 340, 342, 737
BcoDI	GTCTC	1 cut(s)	311
BfoI	RGCGCY	1 cut(s)	356
BmcAI	AGTACT	2 cut(s)	54, 541
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	3 cut(s)	42, 312, 354
BmrI	ACTGGG	2 cut(s)	552, 586
BmsI	GCATC	2 cut(s)	184, 763
BmuI	ACTGGG	2 cut(s)	552, 586
BpmI	CTGGAG	1 cut(s)	359
BpuEI	CTTGAG	2 cut(s)	534, 700
BsaAI	YACGTR	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	209
BsaHI	GRCGYC	4 cut(s)	60, 156, 170, 353
BsaJI	CCNNGG	2 cut(s)	360, 604
BsaWI	WCCGGW	3 cut(s)	47, 376, 482
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 143, 576
Bse118I	RCCGGY	2 cut(s)	520, 524
Bse1I	ACTGG	2 cut(s)	547, 592
Bse8I	GATNNNNATC	1 cut(s)	209
BseAI	TCCGGA	2 cut(s)	47, 376
BseDI	CCNNGG	2 cut(s)	360, 604
BseGI	GGATG	2 cut(s)	175, 415
BseJI	GATNNNNATC	1 cut(s)	209
BseLI	CCNNNNNNNGG	3 cut(s)	80, 143, 576
BseMII	CTCAG	1 cut(s)	678
BseNI	ACTGG	2 cut(s)	547, 592
BseRI	GAGGAG	2 cut(s)	257, 268
BseX3I	CGGCCG	1 cut(s)	522
BseXI	GCAGC	2 cut(s)	5, 785
Bsh1236I	CGCG	4 cut(s)	79, 81, 90, 95
Bsh1285I	CGRYCG	2 cut(s)	483, 525
BshFI	GGCC	4 cut(s)	147, 524, 561, 724
BshNI	GGYRCC	2 cut(s)	310, 352
BsiEI	CGRYCG	2 cut(s)	483, 525
BsiSI	CCGG	9 cut(s)	48, 144, 179, 314, 377, 483, 513, 521, 525
BslFI	GGGAC	3 cut(s)	8, 26, 559
BslI	CCNNNNNNNGG	3 cut(s)	80, 143, 576
BsmAI	GTCTC	1 cut(s)	311
BsmBI	CGTCTC	1 cut(s)	311
BsmFI	GGGAC	3 cut(s)	8, 26, 559
BsmI	GAATGC	1 cut(s)	615
BsnI	GGCC	4 cut(s)	147, 524, 561, 724
Bsp13I	TCCGGA	2 cut(s)	47, 376
Bsp1407I	TGTACA	1 cut(s)	303
Bsp143I	GATC	1 cut(s)	258
Bsp19I	CCATGG	1 cut(s)	604
BspANI	GGCC	4 cut(s)	147, 524, 561, 724
BspCNI	CTCAG	1 cut(s)	677
BspEI	TCCGGA	2 cut(s)	47, 376
BspFNI	CGCG	4 cut(s)	79, 81, 90, 95
BspLI	GGNNCC	3 cut(s)	42, 312, 354
BspPI	GGATC	1 cut(s)	266
BspT107I	GGYRCC	2 cut(s)	310, 352
BsrFI	RCCGGY	2 cut(s)	520, 524
BsrGI	TGTACA	1 cut(s)	303
BsrI	ACTGG	2 cut(s)	547, 592
BssAI	RCCGGY	2 cut(s)	520, 524
BssECI	CCNNGG	2 cut(s)	360, 604
BssMI	GATC	1 cut(s)	258
BssNAI	GTATAC	1 cut(s)	633
BssNI	GRCGYC	4 cut(s)	60, 156, 170, 353
BssT1I	CCWWGG	2 cut(s)	360, 604
Bst1107I	GTATAC	1 cut(s)	633
BstACI	GRCGYC	4 cut(s)	60, 156, 170, 353
BstAUI	TGTACA	1 cut(s)	303
BstBAI	YACGTR	1 cut(s)	238
BstC8I	GCNNGC	7 cut(s)	249, 522, 526, 646, 706, 747, 792
BstDEI	CTNAG	1 cut(s)	664
BstDSI	CCRYGG	1 cut(s)	604
BstF5I	GGATG	2 cut(s)	175, 415
BstFNI	CGCG	4 cut(s)	79, 81, 90, 95
BstH2I	RGCGCY	1 cut(s)	356
BstHHI	GCGC	4 cut(s)	81, 97, 355, 457
BstKTI	GATC	1 cut(s)	261
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	1 cut(s)	258
BstMCI	CGRYCG	2 cut(s)	483, 525
BstNSI	RCATGY	1 cut(s)	652
BstUI	CGCG	4 cut(s)	79, 81, 90, 95
BstV1I	GCAGC	2 cut(s)	5, 785
BstZ17I	GTATAC	1 cut(s)	633
BstZI	CGGCCG	1 cut(s)	522
BsuRI	GGCC	4 cut(s)	147, 524, 561, 724
BtgI	CCRYGG	1 cut(s)	604
BtgZI	GCGATG	2 cut(s)	359, 723
BtsCI	GGATG	2 cut(s)	175, 415
Cac8I	GCNNGC	7 cut(s)	249, 522, 526, 646, 706, 747, 792
CfoI	GCGC	4 cut(s)	81, 97, 355, 457
Cfr10I	RCCGGY	2 cut(s)	520, 524
Cfr13I	GGNCC	1 cut(s)	40
CseI	GACGC	6 cut(s)	10, 68, 101, 159, 164, 328
Csp6I	GTAC	6 cut(s)	53, 229, 304, 439, 540, 668
CviAII	CATG	3 cut(s)	448, 605, 649
CviQI	GTAC	6 cut(s)	53, 229, 304, 439, 540, 668
DdeI	CTNAG	1 cut(s)	664
DinI	GGCGCC	1 cut(s)	354
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
EaeI	YGGCCR	4 cut(s)	145, 522, 559, 722
EagI	CGGCCG	1 cut(s)	522
EciI	GGCGGA	4 cut(s)	103, 344, 407, 422
EclXI	CGGCCG	1 cut(s)	522
Eco130I	CCWWGG	2 cut(s)	360, 604
Eco47I	GGWCC	1 cut(s)	40
Eco52I	CGGCCG	1 cut(s)	522
Eco72I	CACGTG	1 cut(s)	238
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	372
EcoT14I	CCWWGG	2 cut(s)	360, 604
EgeI	GGCGCC	1 cut(s)	354
EheI	GGCGCC	1 cut(s)	354
ErhI	CCWWGG	2 cut(s)	360, 604
Esp3I	CGTCTC	1 cut(s)	311
FaeI	CATG	3 cut(s)	451, 608, 652
FaiI	YATR	8 cut(s)	449, 606, 633, 650, 685, 687, 768, 770
FaqI	GGGAC	3 cut(s)	8, 26, 559
FatI	CATG	3 cut(s)	447, 604, 648
FauI	CCCGC	2 cut(s)	5, 112
FauNDI	CATATG	1 cut(s)	685
FblI	GTMKAC	1 cut(s)	632
FokI	GGATG	2 cut(s)	162, 422
GlaI	GCGC	4 cut(s)	80, 96, 354, 456
GsuI	CTGGAG	1 cut(s)	359
HaeII	RGCGCY	1 cut(s)	356
HaeIII	GGCC	4 cut(s)	147, 524, 561, 724
HapII	CCGG	9 cut(s)	48, 144, 179, 314, 377, 483, 513, 521, 525
HgaI	GACGC	6 cut(s)	10, 68, 101, 159, 164, 328
HhaI	GCGC	4 cut(s)	81, 97, 355, 457
Hin1I	GRCGYC	4 cut(s)	60, 156, 170, 353
Hin1II	CATG	3 cut(s)	451, 608, 652
Hin6I	GCGC	4 cut(s)	79, 95, 353, 455
HinP1I	GCGC	4 cut(s)	79, 95, 353, 455
HindIII	AAGCTT	1 cut(s)	788
HinfI	GANTC	5 cut(s)	110, 140, 476, 547, 662
HpaII	CCGG	9 cut(s)	48, 144, 179, 314, 377, 483, 513, 521, 525
HphI	GGTGA	1 cut(s)	580
Hpy166II	GTNNAC	2 cut(s)	274, 633
Hpy188I	TCNGA	2 cut(s)	166, 432
Hpy188III	TCNNGA	7 cut(s)	48, 137, 262, 377, 655, 717, 784
Hpy8I	GTNNAC	2 cut(s)	274, 633
Hpy99I	CGWCG	7 cut(s)	62, 71, 95, 158, 175, 371, 436
HpyAV	CCTTC	5 cut(s)	31, 259, 343, 457, 490
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	2 cut(s)	447, 749
HpyF3I	CTNAG	1 cut(s)	664
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	4 cut(s)	60, 156, 170, 353
Hsp92II	CATG	3 cut(s)	451, 608, 652
HspAI	GCGC	4 cut(s)	79, 95, 353, 455
KasI	GGCGCC	1 cut(s)	352
Kpn2I	TCCGGA	2 cut(s)	47, 376
KroI	GCCGGC	2 cut(s)	520, 524
KroNI	GCCGGC	2 cut(s)	522, 526
Kzo9I	GATC	1 cut(s)	258
LmnI	GCTCC	3 cut(s)	244, 499, 641
Lsp1109I	GCAGC	2 cut(s)	5, 785
LweI	GCATC	2 cut(s)	184, 763
MaeII	ACGT	1 cut(s)	237
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MboII	GAAGA	1 cut(s)	46
MlsI	TGGCCA	1 cut(s)	561
MluCI	AATT	3 cut(s)	121, 197, 372
MluNI	TGGCCA	1 cut(s)	561
Mly113I	GGCGCC	1 cut(s)	353
MlyI	GAGTC	3 cut(s)	470, 541, 656
MmeI	TCCRAC	1 cut(s)	455
Mox20I	TGGCCA	1 cut(s)	561
MroI	TCCGGA	2 cut(s)	47, 376
MroNI	GCCGGC	2 cut(s)	520, 524
MscI	TGGCCA	1 cut(s)	561
Msp20I	TGGCCA	1 cut(s)	561
MspI	CCGG	9 cut(s)	48, 144, 179, 314, 377, 483, 513, 521, 525
Mva1269I	GAATGC	1 cut(s)	615
MvnI	CGCG	4 cut(s)	79, 81, 90, 95
NaeI	GCCGGC	2 cut(s)	522, 526
NarI	GGCGCC	1 cut(s)	353
NcoI	CCATGG	1 cut(s)	604
NdeI	CATATG	1 cut(s)	685
NdeII	GATC	1 cut(s)	258
NgoMIV	GCCGGC	2 cut(s)	520, 524
NlaIII	CATG	3 cut(s)	451, 608, 652
NlaIV	GGNNCC	3 cut(s)	42, 312, 354
NspI	RCATGY	1 cut(s)	652
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 66
PctI	GAATGC	1 cut(s)	615
PdiI	GCCGGC	2 cut(s)	522, 526
PfeI	GAWTC	2 cut(s)	110, 140
PflMI	CCANNNNNTGG	1 cut(s)	576
PleI	GAGTC	3 cut(s)	470, 541, 656
PluTI	GGCGCC	1 cut(s)	356
PmaCI	CACGTG	1 cut(s)	238
PmlI	CACGTG	1 cut(s)	238
PpsI	GAGTC	3 cut(s)	470, 541, 656
Ppu21I	YACGTR	1 cut(s)	238
PpuMI	RGGWCCY	1 cut(s)	40
Psp5II	RGGWCCY	1 cut(s)	40
PspCI	CACGTG	1 cut(s)	238
PspN4I	GGNNCC	3 cut(s)	42, 312, 354
PspPI	GGNCC	1 cut(s)	40
PspPPI	RGGWCCY	1 cut(s)	40
RsaI	GTAC	6 cut(s)	54, 230, 305, 440, 541, 669
RsaNI	GTAC	6 cut(s)	53, 229, 304, 439, 540, 668
Sau3AI	GATC	1 cut(s)	258
Sau96I	GGNCC	1 cut(s)	40
ScaI	AGTACT	2 cut(s)	54, 541
SchI	GAGTC	3 cut(s)	470, 541, 656
SfaNI	GCATC	2 cut(s)	184, 763
SfoI	GGCGCC	1 cut(s)	354
SinI	GGWCC	1 cut(s)	40
SmlI	CTYRAG	2 cut(s)	549, 715
SmoI	CTYRAG	2 cut(s)	549, 715
Sse9I	AATT	3 cut(s)	121, 197, 372
SspDI	GGCGCC	1 cut(s)	352
StyI	CCWWGG	2 cut(s)	360, 604
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	4 cut(s)	57, 224, 474, 479
TasI	AATT	3 cut(s)	121, 197, 372
TatI	WGTACW	3 cut(s)	52, 303, 539
TfiI	GAWTC	2 cut(s)	110, 140
TseI	GCWGC	2 cut(s)	18, 773
TspDTI	ATGAA	2 cut(s)	362, 476
TspGWI	ACGGA	2 cut(s)	246, 384
Van91I	CCANNNNNTGG	1 cut(s)	576
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	1 cut(s)	372
XceI	RCATGY	1 cut(s)	652
XmiI	GTMKAC	1 cut(s)	632
ZrmI	AGTACT	2 cut(s)	54, 541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.