Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001703

Physical Location & Seq

Genomic Coordinates Reverse (-)

13110846 .. 13112566

Gene Structure 1721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG103800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTATGGGCATGTGGAGCTGTTGGCCAGAGAGATTAAGAAAGGGGTGGATTCCACTGATGGGGTTGAAGGGGTTCTGTACCGGGTTCCGGAAACGCTGTCGTCTGAGGTGTTGGAGCAGATGAAAGTGCCCAAGAAGGATGATCATGGGGTGCCTGTGATAGTGCCTGAGAGACTGGTGGAGGCTGATGGGGTGTTGTTCGGGTTTCCTACCCGGTATGGGTCAATGGCTGCTCAGATGAAGGCGTTTTTCGACTCCACGGGGGAGCTGTGGAGGGAGCAGAAGCTTGCAGGGGTGCCTGCTGGGTTCTTTGTGAGTACTGGCACACAGGGTGGTGGACAGGAGACTAATGCTTGGACAGCCATTACTCAGTTAGCACACCATGGAATGATATATGTTCCAATTGGCTACACCTTTGGTGCTGGAATGTTCCAAATGGACTCCCTTAGAGGAGGGTCTCCATATGGTTCTGGGGTTCTTTCTGGAGATGGCACAAGGGCACCAACTGAGACAGAGCTCGCTCTTGCAGAGCATCACGGAAAGTACATGGCTACTATTGTCAAGAAGCTTGTACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

192

Amino Acids

20.7

Weight (kDa)

5.78

Isoelectric Point (pI)

29.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavodoxin_1	PF00258	1 - 129	2e-08	Flavodoxin
FMN_red	PF03358	7 - 136	4.9e-12	NADPH-dependent FMN reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36750
fragaria_vesca	FvH4_1g13950 FvH4_2g08230 FvH4_2g08230 FvH4_2g08230
malus_domestica	MD02G1152700.v1.1 MD05G1334200.v1.1 MD10G1081100.v1.1 MD10G1309100.v1.1
prunus_persica	Prupe.4G031000_v2.0.a1 Prupe.4G031000_v2.0.a1 Prupe.7G149400_v2.0.a1 Prupe.8G102400_v2.0.a1
pyrus_communis	pycom02g12050 pycom05g30590 pycom10g06420 pycom10g26050 pycom15g23270
rosa_chinensis	RchiOBHm_Chr2g0102261 RchiOBHm_Chr6g0263041 RchiOBHm_Chr6g0263101
rosa_laevigata	RLG00000014375 RLG00000014383 RLG00000017140
rosa_multiflora	Rmu_co8453355.1_g000001 Rmu_sc0002146.1_g000009 Rmu_sc0002479.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140620 Rroxscaffold_7G00204680 Rroxscaffold_7G00204780
rosa_rugosa	Rorug02G0106100 Rorug02G0106100 Rorug06G0002900 Rorug06G0003500
rosa_samantha	Rh2AG154000 Rh2BG160000 Rh2CG159600 Rh2DG159600 Rh6AG122100 Rh6BG115200 Rh6BG116700 Rh6CG113900 Rh6CG115200 Rh6DG103000 Rh6DG103800
rosa_wichuraiana	Rw2G012040 Rw6G010470 Rw6G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	151, 295, 499
AccIII	TCCGGA	1 cut(s)	88
AcoI	YGGCCR	1 cut(s)	24
AdeI	CACNNNGTG	1 cut(s)	332
AfaI	GTAC	4 cut(s)	80, 319, 545, 573
AfiI	CCNNNNNNNGG	3 cut(s)	60, 88, 219
AgsI	TTSAA	1 cut(s)	68
AluBI	AGCT	5 cut(s)	19, 268, 286, 517, 568
AluI	AGCT	5 cut(s)	19, 268, 286, 517, 568
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	4 cut(s)	166, 338, 462, 503
Aor13HI	TCCGGA	1 cut(s)	88
AoxI	GGCC	1 cut(s)	24
ApeKI	GCWGC	1 cut(s)	230
Asp700I	GAANNNNTTC	1 cut(s)	72
AsuC2I	CCSGG	2 cut(s)	83, 214
BaeGI	GKGCMC	2 cut(s)	132, 502
BalI	TGGCCA	1 cut(s)	26
BanI	GGYRCC	3 cut(s)	151, 295, 499
BanII	GRGCYC	1 cut(s)	519
Bbv12I	GWGCWC	1 cut(s)	519
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	3 cut(s)	53, 182, 482
BclI	TGATCA	1 cut(s)	142
BcnI	CCSGG	2 cut(s)	83, 214
BcoDI	GTCTC	4 cut(s)	166, 338, 462, 503
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
BmcAI	AGTACT	1 cut(s)	319
Bme1390I	CCNGG	2 cut(s)	83, 214
BmiI	GGNNCC	4 cut(s)	87, 153, 297, 501
BmrFI	CCNGG	2 cut(s)	83, 214
BmsI	GCATC	1 cut(s)	541
BpmI	CTGGAG	1 cut(s)	504
BpuMI	CCSGG	2 cut(s)	83, 214
BsaI	GGTCTC	1 cut(s)	462
BsaJI	CCNNGG	2 cut(s)	258, 382
BsaWI	WCCGGW	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 88, 219
Bse1I	ACTGG	2 cut(s)	180, 325
BseAI	TCCGGA	1 cut(s)	88
BseDI	CCNNGG	2 cut(s)	258, 382
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	3 cut(s)	60, 88, 219
BseMII	CTCAG	5 cut(s)	96, 159, 248, 383, 498
BseNI	ACTGG	2 cut(s)	180, 325
BseRI	GAGGAG	1 cut(s)	465
BseSI	GKGCMC	2 cut(s)	132, 502
BseXI	GCAGC	1 cut(s)	217
BseYI	CCCAGC	1 cut(s)	302
BshFI	GGCC	1 cut(s)	26
BshNI	GGYRCC	3 cut(s)	151, 295, 499
BsiHKAI	GWGCWC	1 cut(s)	519
BsiSI	CCGG	3 cut(s)	82, 89, 214
BslI	CCNNNNNNNGG	3 cut(s)	60, 88, 219
BsmAI	GTCTC	4 cut(s)	166, 338, 462, 503
BsnI	GGCC	1 cut(s)	26
Bso31I	GGTCTC	1 cut(s)	462
Bsp1286I	GDGCHC	3 cut(s)	132, 502, 519
Bsp13I	TCCGGA	1 cut(s)	88
Bsp1407I	TGTACA	1 cut(s)	571
Bsp143I	GATC	1 cut(s)	142
Bsp19I	CCATGG	1 cut(s)	382
BspANI	GGCC	1 cut(s)	26
BspCNI	CTCAG	5 cut(s)	97, 160, 247, 382, 499
BspEI	TCCGGA	1 cut(s)	88
BspLI	GGNNCC	4 cut(s)	87, 153, 297, 501
BspT107I	GGYRCC	3 cut(s)	151, 295, 499
BspTNI	GGTCTC	1 cut(s)	462
BsrGI	TGTACA	1 cut(s)	571
BsrI	ACTGG	2 cut(s)	180, 325
BssECI	CCNNGG	2 cut(s)	258, 382
BssMI	GATC	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	382
BstAUI	TGTACA	1 cut(s)	571
BstC8I	GCNNGC	3 cut(s)	288, 300, 519
BstDEI	CTNAG	6 cut(s)	105, 168, 234, 369, 446, 507
BstDSI	CCRYGG	2 cut(s)	258, 382
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	4 cut(s)	166, 338, 462, 503
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 359
BstNSI	RCATGY	1 cut(s)	14
BstSCI	CCNGG	2 cut(s)	81, 212
BstSLI	GKGCMC	2 cut(s)	132, 502
BstV1I	GCAGC	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	26
BtgI	CCRYGG	2 cut(s)	258, 382
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	3 cut(s)	288, 300, 519
Csp6I	GTAC	4 cut(s)	79, 318, 544, 572
CviAII	CATG	4 cut(s)	11, 146, 383, 547
CviQI	GTAC	4 cut(s)	79, 318, 544, 572
DdeI	CTNAG	6 cut(s)	105, 168, 234, 369, 446, 507
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
DraIII	CACNNNGTG	1 cut(s)	332
EaeI	YGGCCR	1 cut(s)	24
Ecl136II	GAGCTC	1 cut(s)	517
Eco130I	CCWWGG	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	519
Eco31I	GGTCTC	1 cut(s)	462
Eco53kI	GAGCTC	1 cut(s)	517
EcoICRI	GAGCTC	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	382
EcoT38I	GRGCYC	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	4 cut(s)	14, 149, 386, 550
FatI	CATG	4 cut(s)	10, 145, 382, 546
FauNDI	CATATG	1 cut(s)	463
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	519
Fsp4HI	GCNGC	1 cut(s)	231
GluI	GCNGC	1 cut(s)	231
GsaI	CCCAGC	1 cut(s)	306
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	1 cut(s)	26
HapII	CCGG	3 cut(s)	82, 89, 214
Hin1II	CATG	4 cut(s)	14, 149, 386, 550
HindIII	AAGCTT	2 cut(s)	284, 566
HinfI	GANTC	3 cut(s)	50, 254, 440
HpaII	CCGG	3 cut(s)	82, 89, 214
Hpy166II	GTNNAC	1 cut(s)	338
Hpy188I	TCNGA	2 cut(s)	106, 237
Hpy188III	TCNNGA	3 cut(s)	89, 483, 562
Hpy8I	GTNNAC	1 cut(s)	338
HpyAV	CCTTC	3 cut(s)	62, 130, 235
HpyCH4V	TGCA	2 cut(s)	290, 527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 359
HpyF3I	CTNAG	6 cut(s)	105, 168, 234, 369, 446, 507
Hsp92II	CATG	4 cut(s)	14, 149, 386, 550
Kpn2I	TCCGGA	1 cut(s)	88
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	4 cut(s)	16, 115, 265, 277
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	1 cut(s)	541
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MfeI	CAATTG	1 cut(s)	402
MhlI	GDGCHC	3 cut(s)	132, 502, 519
MlsI	TGGCCA	1 cut(s)	26
MluCI	AATT	1 cut(s)	402
MluNI	TGGCCA	1 cut(s)	26
MlyI	GAGTC	2 cut(s)	248, 434
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	5 cut(s)	100, 175, 267, 443, 446
Mox20I	TGGCCA	1 cut(s)	26
MroI	TCCGGA	1 cut(s)	88
MroXI	GAANNNNTTC	1 cut(s)	72
MscI	TGGCCA	1 cut(s)	26
MseI	TTAA	1 cut(s)	36
Msp20I	TGGCCA	1 cut(s)	26
MspI	CCGG	3 cut(s)	82, 89, 214
MspR9I	CCNGG	2 cut(s)	83, 214
MunI	CAATTG	1 cut(s)	402
MwoI	GCNNNNNNNGC	2 cut(s)	16, 359
NciI	CCSGG	2 cut(s)	83, 214
NcoI	CCATGG	1 cut(s)	382
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	4 cut(s)	14, 149, 386, 550
NlaIV	GGNNCC	4 cut(s)	87, 153, 297, 501
NspI	RCATGY	1 cut(s)	14
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	50
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	2 cut(s)	248, 434
PpsI	GAGTC	2 cut(s)	248, 434
Psp124BI	GAGCTC	1 cut(s)	519
PspFI	CCCAGC	1 cut(s)	302
PspN4I	GGNNCC	4 cut(s)	87, 153, 297, 501
RsaI	GTAC	4 cut(s)	80, 319, 545, 573
RsaNI	GTAC	4 cut(s)	79, 318, 544, 572
SacI	GAGCTC	1 cut(s)	519
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	1 cut(s)	142
ScaI	AGTACT	1 cut(s)	319
SchI	GAGTC	2 cut(s)	248, 434
ScrFI	CCNGG	2 cut(s)	83, 214
SduI	GDGCHC	3 cut(s)	132, 502, 519
SetI	ASST	7 cut(s)	21, 111, 270, 288, 416, 519, 570
SfaNI	GCATC	1 cut(s)	541
Sse9I	AATT	1 cut(s)	402
SstI	GAGCTC	1 cut(s)	519
StyD4I	CCNGG	2 cut(s)	81, 212
StyI	CCWWGG	1 cut(s)	382
TaqI	TCGA	1 cut(s)	252
TasI	AATT	1 cut(s)	402
TatI	WGTACW	3 cut(s)	317, 543, 571
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	1 cut(s)	61
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	2 cut(s)	137, 254
TspGWI	ACGGA	1 cut(s)	552
TspRI	CASTG	1 cut(s)	61
XceI	RCATGY	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	72
ZrmI	AGTACT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.