Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001703

Physical Location & Seq

Genomic Coordinates Reverse (-)

11935185 .. 11937456

Gene Structure 2272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1081100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGGTAAAGGAGGTGGCTGCGTGCCAAGCAAGAACAAGCCACCCAAAGGCGTTTCCGATCAAGATCTTCCGAACCCAGAAAGCGATGGCCCTGTTTCAGACCAGAACCTATCCCAAATCACACCAGAACAAAACCCAATTGATATTGGGGTCCCACCACAAGAACAGCAAGCACAAAGGAAGCTGAAGGTTTTCATAGTGTTTTACTCAATGTATGGGCACGTGGAGATTTTGGCCAGGAGGATTAAAAAAGGGGTTGATTCCATTGATGGGGTTGAAGGGTTTCTGTTCCGGGTTCCGGAGACGCTGTCTCCGGAAGTTTTGGAGCAGATGAAGGTGCCCAAGAAGAAAGATGGTAACGCAGATGAGGTTCCTGTGATATTACCTGAGAGGTTGGCGGAGGCTGATGGGCTGTTATTCGGGTTTCCGACCCGGTATGGGTCCATGGCTGCGCAGATGAAGGCGTTTTTCGACTCCACCGGACAGTTGTGGAGGGAGCAGAGGCTTGCTGGTGTGCCAGCTGGCTTCTTTGTCAGTACTGGCACTCAGGGTGGAGGACAAGAAACCACGGCTTGGACGGCAATAACTCAGTTAGCTCACCATGGAATGGTCTATGTTCCTATCGGTTACACATTCGGTGCTGGAATGTTCGAAATGGACTCCCTTAGAGGAGGGTCTCCATATGGTGCTGGTGTCTTTTCTGGTGATGGCACCAGGAAACCAAGTGAAACGGAGCTGGATCTTGCAGAGCATCATGGAAAATACATGGCTGGAATAGTGCAGAGATTTGCACAGCCTTCTCTTCATCGGCCAGGTCATGGACTGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

277

Amino Acids

29.86

Weight (kDa)

5.83

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavodoxin_1	PF00258	66 - 202	8.5e-09	Flavodoxin
FMN_red	PF03358	77 - 209	7.4e-13	NADPH-dependent FMN reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36750
fragaria_vesca	FvH4_1g13950 FvH4_2g08230 FvH4_2g08230 FvH4_2g08230
malus_domestica	MD02G1152700.v1.1 MD05G1334200.v1.1 MD10G1081100.v1.1 MD10G1309100.v1.1
prunus_persica	Prupe.4G031000_v2.0.a1 Prupe.4G031000_v2.0.a1 Prupe.7G149400_v2.0.a1 Prupe.8G102400_v2.0.a1
pyrus_communis	pycom02g12050 pycom05g30590 pycom10g06420 pycom10g26050 pycom15g23270
rosa_chinensis	RchiOBHm_Chr2g0102261 RchiOBHm_Chr6g0263041 RchiOBHm_Chr6g0263101
rosa_laevigata	RLG00000014375 RLG00000014383 RLG00000017140
rosa_multiflora	Rmu_co8453355.1_g000001 Rmu_sc0002146.1_g000009 Rmu_sc0002479.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140620 Rroxscaffold_7G00204680 Rroxscaffold_7G00204780
rosa_rugosa	Rorug02G0106100 Rorug02G0106100 Rorug06G0002900 Rorug06G0003500
rosa_samantha	Rh2AG154000 Rh2BG160000 Rh2CG159600 Rh2DG159600 Rh6AG122100 Rh6BG115200 Rh6BG116700 Rh6CG113900 Rh6CG115200 Rh6DG103000 Rh6DG103800
rosa_wichuraiana	Rw2G012040 Rw6G010470 Rw6G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	453
AccB1I	GGYRCC	2 cut(s)	337, 710
AccB7I	CCANNNNNTGG	3 cut(s)	573, 607, 818
AccIII	TCCGGA	2 cut(s)	298, 313
AciI	CCGC	1 cut(s)	398
AclWI	GGATC	1 cut(s)	747
AcoI	YGGCCR	2 cut(s)	234, 809
AcuI	CTGAAG	1 cut(s)	206
AcvI	CACGTG	1 cut(s)	223
AfaI	GTAC	1 cut(s)	538
AfiI	CCNNNNNNNGG	7 cut(s)	47, 270, 298, 438, 573, 607, 818
AgsI	TTSAA	1 cut(s)	278
AjnI	CCWGG	3 cut(s)	236, 713, 811
AluBI	AGCT	4 cut(s)	184, 521, 596, 736
AluI	AGCT	4 cut(s)	184, 521, 596, 736
Alw26I	GTCTC	3 cut(s)	296, 315, 681
AlwI	GGATC	1 cut(s)	747
Aor13HI	TCCGGA	2 cut(s)	298, 313
AoxI	GGCC	3 cut(s)	88, 234, 809
ApeKI	GCWGC	2 cut(s)	18, 449
Asp700I	GAANNNNTTC	2 cut(s)	191, 282
AspLEI	GCGC	1 cut(s)	454
AspS9I	GGNCC	3 cut(s)	89, 151, 441
AsuC2I	CCSGG	2 cut(s)	293, 433
AsuHPI	GGTGA	2 cut(s)	590, 716
AsuII	TTCGAA	1 cut(s)	651
AvaII	GGWCC	2 cut(s)	151, 441
BaeGI	GKGCMC	2 cut(s)	222, 342
BalI	TGGCCA	1 cut(s)	236
BanI	GGYRCC	2 cut(s)	337, 710
BbrPI	CACGTG	1 cut(s)	223
BbvI	GCAGC	2 cut(s)	5, 436
BccI	CCATC	5 cut(s)	80, 263, 347, 401, 701
BceAI	ACGGC	2 cut(s)	585, 594
BciT130I	CCWGG	3 cut(s)	238, 715, 813
BcnI	CCSGG	2 cut(s)	293, 433
BcoDI	GTCTC	3 cut(s)	296, 315, 681
BfaI	CTAG	1 cut(s)	829
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	2 cut(s)	19, 450
BlsI	GCNGC	2 cut(s)	20, 451
BmcAI	AGTACT	1 cut(s)	538
Bme1390I	CCNGG	5 cut(s)	238, 293, 433, 715, 813
Bme18I	GGWCC	2 cut(s)	151, 441
BmgT120I	GGNCC	3 cut(s)	89, 151, 441
BmiI	GGNNCC	7 cut(s)	152, 153, 297, 339, 372, 442, 712
BmrFI	CCNGG	5 cut(s)	238, 293, 433, 715, 813
BmsI	GCATC	1 cut(s)	760
Bpu14I	TTCGAA	1 cut(s)	651
BpuMI	CCSGG	2 cut(s)	293, 433
BsaAI	YACGTR	1 cut(s)	223
BsaBI	GATNNNNATC	1 cut(s)	63
BsaI	GGTCTC	1 cut(s)	681
BsaJI	CCNNGG	3 cut(s)	444, 567, 601
BsaWI	WCCGGW	3 cut(s)	298, 313, 479
BsaXI	ACNNNNNCTCC	4 cut(s)	293, 295, 323, 325
Bsc4I	CCNNNNNNNGG	7 cut(s)	47, 270, 298, 438, 573, 607, 818
Bse1I	ACTGG	2 cut(s)	544, 828
Bse8I	GATNNNNATC	1 cut(s)	63
BseAI	TCCGGA	2 cut(s)	298, 313
BseBI	CCWGG	3 cut(s)	238, 715, 813
BseDI	CCNNGG	3 cut(s)	444, 567, 601
BseJI	GATNNNNATC	1 cut(s)	63
BseLI	CCNNNNNNNGG	7 cut(s)	47, 270, 298, 438, 573, 607, 818
BseMII	CTCAG	3 cut(s)	378, 560, 602
BseNI	ACTGG	2 cut(s)	544, 828
BseRI	GAGGAG	1 cut(s)	684
BseSI	GKGCMC	2 cut(s)	222, 342
BseXI	GCAGC	2 cut(s)	5, 436
BsgI	GTGCAG	1 cut(s)	800
BshFI	GGCC	3 cut(s)	90, 236, 811
BshNI	GGYRCC	2 cut(s)	337, 710
BsiSI	CCGG	5 cut(s)	292, 299, 314, 433, 480
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	7 cut(s)	47, 270, 298, 438, 573, 607, 818
BsmAI	GTCTC	3 cut(s)	296, 315, 681
BsmBI	CGTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	3 cut(s)	90, 236, 811
Bso31I	GGTCTC	1 cut(s)	681
Bsp119I	TTCGAA	1 cut(s)	651
Bsp1286I	GDGCHC	2 cut(s)	222, 342
Bsp13I	TCCGGA	2 cut(s)	298, 313
Bsp143I	GATC	3 cut(s)	58, 64, 739
Bsp19I	CCATGG	2 cut(s)	444, 601
BspACI	CCGC	1 cut(s)	398
BspANI	GGCC	3 cut(s)	90, 236, 811
BspCNI	CTCAG	3 cut(s)	379, 559, 601
BspEI	TCCGGA	2 cut(s)	298, 313
BspLI	GGNNCC	7 cut(s)	152, 153, 297, 339, 372, 442, 712
BspPI	GGATC	1 cut(s)	747
BspT104I	TTCGAA	1 cut(s)	651
BspT107I	GGYRCC	2 cut(s)	337, 710
BspTNI	GGTCTC	1 cut(s)	681
BsrI	ACTGG	2 cut(s)	544, 828
BssECI	CCNNGG	3 cut(s)	444, 567, 601
BssMI	GATC	3 cut(s)	58, 64, 739
BssT1I	CCWWGG	2 cut(s)	444, 601
Bst2UI	CCWGG	3 cut(s)	238, 715, 813
Bst4CI	ACNGT	1 cut(s)	486
Bst6I	CTCTTC	1 cut(s)	807
BstBAI	YACGTR	1 cut(s)	223
BstBI	TTCGAA	1 cut(s)	651
BstC8I	GCNNGC	5 cut(s)	23, 171, 507, 519, 523
BstDEI	CTNAG	4 cut(s)	387, 546, 588, 665
BstDSI	CCRYGG	3 cut(s)	444, 567, 601
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	3 cut(s)	61, 67, 742
BstMAI	GTCTC	3 cut(s)	296, 315, 681
BstMBI	GATC	3 cut(s)	58, 64, 739
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 578
BstNI	CCWGG	3 cut(s)	238, 715, 813
BstSCI	CCNGG	5 cut(s)	236, 291, 431, 713, 811
BstSLI	GKGCMC	2 cut(s)	222, 342
BstV1I	GCAGC	2 cut(s)	5, 436
BstX2I	RGATCY	2 cut(s)	64, 739
BstYI	RGATCY	2 cut(s)	64, 739
BsuRI	GGCC	3 cut(s)	90, 236, 811
BtgI	CCRYGG	3 cut(s)	444, 567, 601
BtgZI	GCGATG	1 cut(s)	99
Cac8I	GCNNGC	5 cut(s)	23, 171, 507, 519, 523
CfoI	GCGC	1 cut(s)	454
Cfr13I	GGNCC	3 cut(s)	89, 151, 441
CseI	GACGC	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	537
CviAII	CATG	5 cut(s)	445, 602, 755, 766, 818
CviQI	GTAC	1 cut(s)	537
DdeI	CTNAG	4 cut(s)	387, 546, 588, 665
DpnI	GATC	3 cut(s)	60, 66, 741
DpnII	GATC	3 cut(s)	58, 64, 739
EaeI	YGGCCR	2 cut(s)	234, 809
Eam1104I	CTCTTC	1 cut(s)	807
EarI	CTCTTC	1 cut(s)	807
EciI	GGCGGA	1 cut(s)	413
Eco130I	CCWWGG	2 cut(s)	444, 601
Eco31I	GGTCTC	1 cut(s)	681
Eco47I	GGWCC	2 cut(s)	151, 441
Eco57I	CTGAAG	1 cut(s)	206
Eco72I	CACGTG	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRII	CCWGG	3 cut(s)	236, 713, 811
EcoT14I	CCWWGG	2 cut(s)	444, 601
ErhI	CCWWGG	2 cut(s)	444, 601
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	5 cut(s)	448, 605, 758, 769, 821
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	5 cut(s)	444, 601, 754, 765, 817
FauNDI	CATATG	1 cut(s)	682
Fnu4HI	GCNGC	2 cut(s)	19, 450
Fsp4HI	GCNGC	2 cut(s)	19, 450
FspBI	CTAG	1 cut(s)	829
FspI	TGCGCA	1 cut(s)	453
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	2 cut(s)	19, 450
HaeIII	GGCC	3 cut(s)	90, 236, 811
HapII	CCGG	5 cut(s)	292, 299, 314, 433, 480
HgaI	GACGC	1 cut(s)	313
HhaI	GCGC	1 cut(s)	454
Hin1II	CATG	5 cut(s)	448, 605, 758, 769, 821
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HinfI	GANTC	3 cut(s)	260, 473, 659
HpaII	CCGG	5 cut(s)	292, 299, 314, 433, 480
HphI	GGTGA	2 cut(s)	590, 716
Hpy188I	TCNGA	4 cut(s)	58, 72, 100, 429
Hpy188III	TCNNGA	3 cut(s)	62, 299, 314
HpyAV	CCTTC	5 cut(s)	181, 272, 328, 454, 807
HpyCH4III	ACNGT	1 cut(s)	486
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	3 cut(s)	746, 781, 791
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 578
HpyF3I	CTNAG	4 cut(s)	387, 546, 588, 665
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	5 cut(s)	448, 605, 758, 769, 821
HspAI	GCGC	1 cut(s)	452
KflI	GGGWCCC	1 cut(s)	151
Kpn2I	TCCGGA	2 cut(s)	298, 313
Kzo9I	GATC	3 cut(s)	58, 64, 739
LmnI	GCTCC	3 cut(s)	325, 496, 733
Lsp1109I	GCAGC	2 cut(s)	5, 436
LweI	GCATC	1 cut(s)	760
MaeI	CTAG	1 cut(s)	829
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	356, 626
MalI	GATC	3 cut(s)	60, 66, 741
MboI	GATC	3 cut(s)	58, 64, 739
MboII	GAAGA	3 cut(s)	59, 358, 794
MfeI	CAATTG	1 cut(s)	138
MflI	RGATCY	2 cut(s)	64, 739
MhlI	GDGCHC	2 cut(s)	222, 342
MlsI	TGGCCA	1 cut(s)	236
MluCI	AATT	1 cut(s)	138
MluNI	TGGCCA	1 cut(s)	236
MlyI	GAGTC	2 cut(s)	467, 653
MmeI	TCCRAC	1 cut(s)	452
Mox20I	TGGCCA	1 cut(s)	236
MroI	TCCGGA	2 cut(s)	298, 313
MroXI	GAANNNNTTC	2 cut(s)	191, 282
MscI	TGGCCA	1 cut(s)	236
MseI	TTAA	1 cut(s)	246
Msp20I	TGGCCA	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	5 cut(s)	292, 299, 314, 433, 480
MspR9I	CCNGG	5 cut(s)	238, 293, 433, 715, 813
MunI	CAATTG	1 cut(s)	138
MvaI	CCWGG	3 cut(s)	238, 715, 813
MwoI	GCNNNNNNNGC	2 cut(s)	27, 578
NciI	CCSGG	2 cut(s)	293, 433
NcoI	CCATGG	2 cut(s)	444, 601
NdeI	CATATG	1 cut(s)	682
NdeII	GATC	3 cut(s)	58, 64, 739
NlaIII	CATG	5 cut(s)	448, 605, 758, 769, 821
NlaIV	GGNNCC	7 cut(s)	152, 153, 297, 339, 372, 442, 712
NsbI	TGCGCA	1 cut(s)	453
NspV	TTCGAA	1 cut(s)	651
PdmI	GAANNNNTTC	2 cut(s)	191, 282
PfeI	GAWTC	1 cut(s)	260
PflFI	GACNNNGTC	1 cut(s)	307
PflMI	CCANNNNNTGG	3 cut(s)	573, 607, 818
PkrI	GCNGC	2 cut(s)	20, 451
PleI	GAGTC	2 cut(s)	467, 653
PmaCI	CACGTG	1 cut(s)	223
PmlI	CACGTG	1 cut(s)	223
PpsI	GAGTC	2 cut(s)	467, 653
Ppu21I	YACGTR	1 cut(s)	223
PpuMI	RGGWCCY	1 cut(s)	151
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	3 cut(s)	236, 713, 811
PspCI	CACGTG	1 cut(s)	223
PspGI	CCWGG	3 cut(s)	236, 713, 811
PspN4I	GGNNCC	7 cut(s)	152, 153, 297, 339, 372, 442, 712
PspPI	GGNCC	3 cut(s)	89, 151, 441
PspPPI	RGGWCCY	1 cut(s)	151
PsuI	RGATCY	2 cut(s)	64, 739
PsyI	GACNNNGTC	1 cut(s)	307
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	1 cut(s)	538
RsaNI	GTAC	1 cut(s)	537
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	2 cut(s)	19, 450
Sau3AI	GATC	3 cut(s)	58, 64, 739
Sau96I	GGNCC	3 cut(s)	89, 151, 441
ScaI	AGTACT	1 cut(s)	538
SchI	GAGTC	2 cut(s)	467, 653
ScrFI	CCNGG	5 cut(s)	238, 293, 433, 715, 813
SduI	GDGCHC	2 cut(s)	222, 342
SfaNI	GCATC	1 cut(s)	760
SfuI	TTCGAA	1 cut(s)	651
SinI	GGWCC	2 cut(s)	151, 441
Sse9I	AATT	1 cut(s)	138
SsiI	CCGC	1 cut(s)	398
SspMI	CTAG	1 cut(s)	829
StyD4I	CCNGG	5 cut(s)	236, 291, 431, 713, 811
StyI	CCWWGG	2 cut(s)	444, 601
TaaI	ACNGT	1 cut(s)	486
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	2 cut(s)	471, 651
TasI	AATT	1 cut(s)	138
TatI	WGTACW	1 cut(s)	536
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TseI	GCWGC	2 cut(s)	18, 449
TspDTI	ATGAA	4 cut(s)	184, 347, 473, 794
TspGWI	ACGGA	1 cut(s)	746
Tth111I	GACNNNGTC	1 cut(s)	307
Van91I	CCANNNNNTGG	3 cut(s)	573, 607, 818
VpaK11BI	GGWCC	2 cut(s)	151, 441
XmnI	GAANNNNTTC	2 cut(s)	191, 282
XspI	CTAG	1 cut(s)	829
ZrmI	AGTACT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.