Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002479.1

Orthogroup ID

OG0001703

Physical Location & Seq

Genomic Coordinates Reverse (-)

23062 .. 25131

Gene Structure 2070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002479.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

atgggtaaaggaggtggctgtgtgcccagcaagaataggccaccggcaggcgttgccggcgctgatcttccgaacccaaaaagcgatgatcttgtttcagaccaaaaccaaaaccaaacccaaaccacagaaacaacaaacccaattaaggatgaaggggttgcagagaaaaagcaacagaggaagaagctgagggttttcatagtgttttactcaatgtatgggcatgtggagctgttggccagagagattaagaaaggggttgattccactgatggggttgaaggggttctgtaccgggttccggaaacgctgtcgtctgaggtgttggagcagatgaaagtgcccaagaaggatgatcatggggtgcctgtgatagtgcctgagagactggtggaggctgatgggcatcttgatcgtctccaatcggacaagaaaaccattcctggggtgcctgtgatggtgcctgagagactggtggaggctgatggggttttgtttgggtttcctacccggtatgggtcaatggctgctcagatgaaggcgtttttcgactccacgggggagctgtggagggagcagaagcttgcaggggtgcctgctgggttctttgtgagtactggcacacagggtggtggacaggagactaatgcttggacagccattactcagttagcacaccatggaatgatatatgttccaattggctacacctttggtgctggaatgttccaaatggactcccttagaggagggtctccatatggttctggggttctttctggagatggcacaagggcaccaactgagacagagctcgctcttgcagagcatcacggaaagtacatggctactattgtcaagaagcttgtacattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

292

Amino Acids

31.56

Weight (kDa)

6.26

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36750
fragaria_vesca	FvH4_1g13950 FvH4_2g08230 FvH4_2g08230 FvH4_2g08230
malus_domestica	MD02G1152700.v1.1 MD05G1334200.v1.1 MD10G1081100.v1.1 MD10G1309100.v1.1
prunus_persica	Prupe.4G031000_v2.0.a1 Prupe.4G031000_v2.0.a1 Prupe.7G149400_v2.0.a1 Prupe.8G102400_v2.0.a1
pyrus_communis	pycom02g12050 pycom05g30590 pycom10g06420 pycom10g26050 pycom15g23270
rosa_chinensis	RchiOBHm_Chr2g0102261 RchiOBHm_Chr6g0263041 RchiOBHm_Chr6g0263101
rosa_laevigata	RLG00000014375 RLG00000014383 RLG00000017140
rosa_multiflora	Rmu_co8453355.1_g000001 Rmu_sc0002146.1_g000009 Rmu_sc0002479.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140620 Rroxscaffold_7G00204680 Rroxscaffold_7G00204780
rosa_rugosa	Rorug02G0106100 Rorug02G0106100 Rorug06G0002900 Rorug06G0003500
rosa_samantha	Rh2AG154000 Rh2BG160000 Rh2CG159600 Rh2DG159600 Rh6AG122100 Rh6BG115200 Rh6BG116700 Rh6CG113900 Rh6CG115200 Rh6DG103000 Rh6DG103800
rosa_wichuraiana	Rw2G012040 Rw6G010470 Rw6G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	5 cut(s)	367, 451, 463, 595, 799
AccIII	TCCGGA	1 cut(s)	304
AcoI	YGGCCR	1 cut(s)	240
AdeI	CACNNNGTG	1 cut(s)	632
AfaI	GTAC	4 cut(s)	296, 619, 845, 873
AfiI	CCNNNNNNNGG	6 cut(s)	47, 148, 276, 304, 447, 519
AgsI	TTSAA	1 cut(s)	284
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	6 cut(s)	190, 235, 568, 586, 817, 868
AluI	AGCT	6 cut(s)	190, 235, 568, 586, 817, 868
Alw21I	GWGCWC	1 cut(s)	819
Alw26I	GTCTC	6 cut(s)	382, 425, 466, 638, 762, 803
Aor13HI	TCCGGA	1 cut(s)	304
AoxI	GGCC	2 cut(s)	38, 240
ApeKI	GCWGC	1 cut(s)	530
Asp700I	GAANNNNTTC	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	62
AsuC2I	CCSGG	2 cut(s)	299, 514
BaeGI	GKGCMC	3 cut(s)	27, 348, 802
BalI	TGGCCA	1 cut(s)	242
BanI	GGYRCC	5 cut(s)	367, 451, 463, 595, 799
BanII	GRGCYC	1 cut(s)	819
Bbv12I	GWGCWC	1 cut(s)	819
BbvCI	CCTCAGC	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	517
BccI	CCATC	5 cut(s)	269, 398, 454, 482, 782
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciT130I	CCWGG	1 cut(s)	447
BclI	TGATCA	1 cut(s)	358
BcnI	CCSGG	2 cut(s)	299, 514
BcoDI	GTCTC	6 cut(s)	382, 425, 466, 638, 762, 803
BfoI	RGCGCY	1 cut(s)	63
BisI	GCNGC	1 cut(s)	531
BlsI	GCNGC	1 cut(s)	532
BmcAI	AGTACT	1 cut(s)	619
Bme1390I	CCNGG	3 cut(s)	299, 447, 514
BmiI	GGNNCC	6 cut(s)	303, 369, 453, 465, 597, 801
BmrFI	CCNGG	3 cut(s)	299, 447, 514
BmsI	GCATC	2 cut(s)	418, 841
BpmI	CTGGAG	1 cut(s)	804
Bpu10I	CCTNAGC	1 cut(s)	191
BpuMI	CCSGG	2 cut(s)	299, 514
BsaBI	GATNNNNATC	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	762
BsaJI	CCNNGG	3 cut(s)	446, 558, 682
BsaWI	WCCGGW	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	6 cut(s)	47, 148, 276, 304, 447, 519
Bse118I	RCCGGY	2 cut(s)	43, 56
Bse1I	ACTGG	3 cut(s)	396, 480, 625
Bse8I	GATNNNNATC	1 cut(s)	408
BseAI	TCCGGA	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	3 cut(s)	446, 558, 682
BseGI	GGATG	2 cut(s)	157, 361
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	6 cut(s)	47, 148, 276, 304, 447, 519
BseMII	CTCAG	7 cut(s)	182, 312, 375, 459, 548, 683, 798
BseNI	ACTGG	3 cut(s)	396, 480, 625
BseRI	GAGGAG	1 cut(s)	765
BseSI	GKGCMC	3 cut(s)	27, 348, 802
BseXI	GCAGC	1 cut(s)	517
BseYI	CCCAGC	2 cut(s)	26, 602
BshFI	GGCC	2 cut(s)	40, 242
BshNI	GGYRCC	5 cut(s)	367, 451, 463, 595, 799
BsiHKAI	GWGCWC	1 cut(s)	819
BsiSI	CCGG	5 cut(s)	44, 57, 298, 305, 514
BslI	CCNNNNNNNGG	6 cut(s)	47, 148, 276, 304, 447, 519
BsmAI	GTCTC	6 cut(s)	382, 425, 466, 638, 762, 803
BsmBI	CGTCTC	1 cut(s)	425
BsnI	GGCC	2 cut(s)	40, 242
Bso31I	GGTCTC	1 cut(s)	762
Bsp1286I	GDGCHC	4 cut(s)	27, 348, 802, 819
Bsp13I	TCCGGA	1 cut(s)	304
Bsp1407I	TGTACA	1 cut(s)	871
Bsp143I	GATC	4 cut(s)	64, 88, 358, 415
Bsp19I	CCATGG	1 cut(s)	682
BspANI	GGCC	2 cut(s)	40, 242
BspCNI	CTCAG	7 cut(s)	183, 313, 376, 460, 547, 682, 799
BspEI	TCCGGA	1 cut(s)	304
BspLI	GGNNCC	6 cut(s)	303, 369, 453, 465, 597, 801
BspT107I	GGYRCC	5 cut(s)	367, 451, 463, 595, 799
BspTNI	GGTCTC	1 cut(s)	762
BsrFI	RCCGGY	2 cut(s)	43, 56
BsrGI	TGTACA	1 cut(s)	871
BsrI	ACTGG	3 cut(s)	396, 480, 625
BssAI	RCCGGY	2 cut(s)	43, 56
BssECI	CCNNGG	3 cut(s)	446, 558, 682
BssMI	GATC	4 cut(s)	64, 88, 358, 415
BssT1I	CCWWGG	1 cut(s)	682
Bst2UI	CCWGG	1 cut(s)	447
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstAUI	TGTACA	1 cut(s)	871
BstC8I	GCNNGC	5 cut(s)	49, 58, 588, 600, 819
BstDEI	CTNAG	8 cut(s)	191, 321, 384, 468, 534, 669, 746, 807
BstDSI	CCRYGG	2 cut(s)	558, 682
BstF5I	GGATG	2 cut(s)	157, 361
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	4 cut(s)	67, 91, 361, 418
BstMAI	GTCTC	6 cut(s)	382, 425, 466, 638, 762, 803
BstMBI	GATC	4 cut(s)	64, 88, 358, 415
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 57, 232, 659
BstNI	CCWGG	1 cut(s)	447
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	3 cut(s)	297, 445, 512
BstSLI	GKGCMC	3 cut(s)	27, 348, 802
BstV1I	GCAGC	1 cut(s)	517
BsuRI	GGCC	2 cut(s)	40, 242
BtgI	CCRYGG	2 cut(s)	558, 682
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	157, 361
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	5 cut(s)	49, 58, 588, 600, 819
CfoI	GCGC	1 cut(s)	62
Cfr10I	RCCGGY	2 cut(s)	43, 56
Csp6I	GTAC	4 cut(s)	295, 618, 844, 872
CviAII	CATG	4 cut(s)	227, 362, 683, 847
CviQI	GTAC	4 cut(s)	295, 618, 844, 872
DdeI	CTNAG	8 cut(s)	191, 321, 384, 468, 534, 669, 746, 807
DpnI	GATC	4 cut(s)	66, 90, 360, 417
DpnII	GATC	4 cut(s)	64, 88, 358, 415
DraIII	CACNNNGTG	1 cut(s)	632
EaeI	YGGCCR	1 cut(s)	240
Ecl136II	GAGCTC	1 cut(s)	817
Eco130I	CCWWGG	1 cut(s)	682
Eco24I	GRGCYC	1 cut(s)	819
Eco31I	GGTCTC	1 cut(s)	762
Eco53kI	GAGCTC	1 cut(s)	817
EcoICRI	GAGCTC	1 cut(s)	817
EcoRII	CCWGG	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	682
EcoT38I	GRGCYC	1 cut(s)	819
ErhI	CCWWGG	1 cut(s)	682
Esp3I	CGTCTC	1 cut(s)	425
FaeI	CATG	4 cut(s)	230, 365, 686, 850
FatI	CATG	4 cut(s)	226, 361, 682, 846
FauNDI	CATATG	1 cut(s)	763
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	1 cut(s)	531
FokI	GGATG	2 cut(s)	164, 368
FriOI	GRGCYC	1 cut(s)	819
Fsp4HI	GCNGC	1 cut(s)	531
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	1 cut(s)	531
GsaI	CCCAGC	2 cut(s)	30, 606
GsuI	CTGGAG	1 cut(s)	804
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	2 cut(s)	40, 242
HapII	CCGG	5 cut(s)	44, 57, 298, 305, 514
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	4 cut(s)	230, 365, 686, 850
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HindIII	AAGCTT	2 cut(s)	584, 866
HinfI	GANTC	3 cut(s)	266, 554, 740
HpaII	CCGG	5 cut(s)	44, 57, 298, 305, 514
Hpy166II	GTNNAC	1 cut(s)	638
Hpy188I	TCNGA	5 cut(s)	72, 100, 322, 430, 537
Hpy188III	TCNNGA	4 cut(s)	305, 413, 783, 862
Hpy8I	GTNNAC	1 cut(s)	638
HpyAV	CCTTC	4 cut(s)	149, 278, 346, 535
HpyCH4V	TGCA	3 cut(s)	164, 590, 827
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 57, 232, 659
HpyF3I	CTNAG	8 cut(s)	191, 321, 384, 468, 534, 669, 746, 807
Hsp92II	CATG	4 cut(s)	230, 365, 686, 850
HspAI	GCGC	1 cut(s)	60
Kpn2I	TCCGGA	1 cut(s)	304
KroI	GCCGGC	1 cut(s)	56
KroNI	GCCGGC	1 cut(s)	58
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	4 cut(s)	64, 88, 358, 415
LmnI	GCTCC	4 cut(s)	232, 331, 565, 577
Lsp1109I	GCAGC	1 cut(s)	517
LweI	GCATC	2 cut(s)	418, 841
MalI	GATC	4 cut(s)	66, 90, 360, 417
MboI	GATC	4 cut(s)	64, 88, 358, 415
MboII	GAAGA	2 cut(s)	59, 196
MfeI	CAATTG	1 cut(s)	702
MhlI	GDGCHC	4 cut(s)	27, 348, 802, 819
MlsI	TGGCCA	1 cut(s)	242
MluCI	AATT	2 cut(s)	144, 702
MluNI	TGGCCA	1 cut(s)	242
MlyI	GAGTC	2 cut(s)	548, 734
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	9 cut(s)	5, 174, 186, 316, 391, 475, 567, 743, 746
Mox20I	TGGCCA	1 cut(s)	242
MroI	TCCGGA	1 cut(s)	304
MroNI	GCCGGC	1 cut(s)	56
MroXI	GAANNNNTTC	1 cut(s)	288
MscI	TGGCCA	1 cut(s)	242
MseI	TTAA	2 cut(s)	147, 252
Msp20I	TGGCCA	1 cut(s)	242
MspI	CCGG	5 cut(s)	44, 57, 298, 305, 514
MspR9I	CCNGG	3 cut(s)	299, 447, 514
MunI	CAATTG	1 cut(s)	702
MvaI	CCWGG	1 cut(s)	447
MwoI	GCNNNNNNNGC	4 cut(s)	53, 57, 232, 659
NaeI	GCCGGC	1 cut(s)	58
NciI	CCSGG	2 cut(s)	299, 514
NcoI	CCATGG	1 cut(s)	682
NdeI	CATATG	1 cut(s)	763
NdeII	GATC	4 cut(s)	64, 88, 358, 415
NgoMIV	GCCGGC	1 cut(s)	56
NlaIII	CATG	4 cut(s)	230, 365, 686, 850
NlaIV	GGNNCC	6 cut(s)	303, 369, 453, 465, 597, 801
NspI	RCATGY	1 cut(s)	230
PdiI	GCCGGC	1 cut(s)	58
PdmI	GAANNNNTTC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	532
PleI	GAGTC	2 cut(s)	548, 734
PpsI	GAGTC	2 cut(s)	548, 734
Psp124BI	GAGCTC	1 cut(s)	819
Psp6I	CCWGG	1 cut(s)	445
PspFI	CCCAGC	2 cut(s)	26, 602
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	6 cut(s)	303, 369, 453, 465, 597, 801
RsaI	GTAC	4 cut(s)	296, 619, 845, 873
RsaNI	GTAC	4 cut(s)	295, 618, 844, 872
SacI	GAGCTC	1 cut(s)	819
SaqAI	TTAA	2 cut(s)	147, 252
SatI	GCNGC	1 cut(s)	531
Sau3AI	GATC	4 cut(s)	64, 88, 358, 415
ScaI	AGTACT	1 cut(s)	619
SchI	GAGTC	2 cut(s)	548, 734
ScrFI	CCNGG	3 cut(s)	299, 447, 514
SduI	GDGCHC	4 cut(s)	27, 348, 802, 819
SetI	ASST	9 cut(s)	16, 192, 237, 327, 570, 588, 716, 819, 870
SfaNI	GCATC	2 cut(s)	418, 841
Sse9I	AATT	2 cut(s)	144, 702
SstI	GAGCTC	1 cut(s)	819
StyD4I	CCNGG	3 cut(s)	297, 445, 512
StyI	CCWWGG	1 cut(s)	682
TaqI	TCGA	1 cut(s)	552
TasI	AATT	2 cut(s)	144, 702
TatI	WGTACW	3 cut(s)	617, 843, 871
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	2 cut(s)	147, 252
Tru9I	TTAA	2 cut(s)	147, 252
TscAI	CASTG	1 cut(s)	277
TseI	GCWGC	1 cut(s)	530
TspDTI	ATGAA	4 cut(s)	168, 190, 353, 554
TspGWI	ACGGA	1 cut(s)	852
TspRI	CASTG	1 cut(s)	277
XceI	RCATGY	1 cut(s)	230
XmnI	GAANNNNTTC	1 cut(s)	288
ZrmI	AGTACT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.