Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001703

Physical Location & Seq

Genomic Coordinates Forward (+)

13303869 .. 13305358

Gene Structure 1490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017140

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGGAAAAGGCGGGGGCTGCGTCCCAAGCAAGAAGAAGGTCCCGTCCGGCGTAGTCGCCCCCGATGGCCCTACGCGCGGCTCAGGTGACGCGCCTATTCCCGCCGACGACCGCGCCGATTCCAATGTCGTTCCCGATTCCGGCCAAAACGACGCCATTTCGGAGGCGTCGCATCCAGCGCCGGCGGCGAAATTGAGGATATTTATCGTGTTCTACTCGATGTACGGACACGTGGAGGAGCTGGCGAGGAGGATCAAGAAGGGGGCGGACGGCGTGGAGGGAGTGGAGGGGGTGCTGTACAGGGTGCCGGAGACGCTGACGGCGGAGGTGCTGGAGGCGATGAAGGCGCCGCCCAAGGACGACGGAATTCCGGAGATTTCGGCGGCGGAGTTGGCGGCGGCGGATGGGGTGTTGTTCGGGTTTCCGACGAGGTACGGGTGCATGGCGGCGCAGATGAAGGCGTTTTTCGACTCGACCGGAGGGTTGTGGAAGGAGCAGAGCCTCGCCGGAAAGCCGGCCGGCTTTTTTGTTAGTACTGGGACTCAAGGAGGTGGCCAAGAAACCACAGCTTGGACAGCTATTACCCAGTTAGCACACCATGGAATGCTATTTGTTCCCATTGGGTATACTTTTGGAGCTGGCATGTTCAAGATGGACTCAGTACGAGGGGGGTCTCCATATGGTGCTGGTGTTTTTGCTGGCGATGGCTCAAGACGGCCAAGTGAAACAGAGTTGGGGCTTGCAGAGCATCAAGGGAAGTATATGGCAGCAGTAGTCAAGAAGCTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003955 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0010181 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044464 GO:0048037 GO:0050662 GO:0055114 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

264

Amino Acids

27.28

Weight (kDa)

5.98

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavodoxin_1	PF00258	69 - 201	8.5e-14	Flavodoxin
FMN_red	PF03358	80 - 208	6.6e-13	NADPH-dependent FMN reductase
Flavodoxin_2	PF02525	99 - 185	5.9e-06	Flavodoxin-like fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36750
fragaria_vesca	FvH4_1g13950 FvH4_2g08230 FvH4_2g08230 FvH4_2g08230
malus_domestica	MD02G1152700.v1.1 MD05G1334200.v1.1 MD10G1081100.v1.1 MD10G1309100.v1.1
prunus_persica	Prupe.4G031000_v2.0.a1 Prupe.4G031000_v2.0.a1 Prupe.7G149400_v2.0.a1 Prupe.8G102400_v2.0.a1
pyrus_communis	pycom02g12050 pycom05g30590 pycom10g06420 pycom10g26050 pycom15g23270
rosa_chinensis	RchiOBHm_Chr2g0102261 RchiOBHm_Chr6g0263041 RchiOBHm_Chr6g0263101
rosa_laevigata	RLG00000014375 RLG00000014383 RLG00000017140
rosa_multiflora	Rmu_co8453355.1_g000001 Rmu_sc0002146.1_g000009 Rmu_sc0002479.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140620 Rroxscaffold_7G00204680 Rroxscaffold_7G00204780
rosa_rugosa	Rorug02G0106100 Rorug02G0106100 Rorug06G0002900 Rorug06G0003500
rosa_samantha	Rh2AG154000 Rh2BG160000 Rh2CG159600 Rh2DG159600 Rh6AG122100 Rh6BG115200 Rh6BG116700 Rh6CG113900 Rh6CG115200 Rh6DG103000 Rh6DG103800
rosa_wichuraiana	Rw2G012040 Rw6G010470 Rw6G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	304, 346
AccB7I	CCANNNNNTGG	1 cut(s)	570
AccI	GTMKAC	1 cut(s)	626
AccII	CGCG	4 cut(s)	76, 78, 92, 114
AccIII	TCCGGA	1 cut(s)	370
AclWI	GGATC	1 cut(s)	260
AcoI	YGGCCR	4 cut(s)	142, 516, 553, 716
AcsI	RAATTY	1 cut(s)	366
AcvI	CACGTG	1 cut(s)	232
AcyI	GRCGYC	3 cut(s)	153, 167, 347
AfaI	GTAC	5 cut(s)	224, 299, 434, 535, 663
AfiI	CCNNNNNNNGG	3 cut(s)	77, 140, 570
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	649
AluBI	AGCT	5 cut(s)	241, 569, 578, 638, 784
AluI	AGCT	5 cut(s)	241, 569, 578, 638, 784
Alw26I	GTCTC	2 cut(s)	305, 678
AlwI	GGATC	1 cut(s)	260
Aor13HI	TCCGGA	1 cut(s)	370
AoxI	GGCC	5 cut(s)	67, 142, 516, 553, 716
ApeKI	GCWGC	2 cut(s)	18, 767
ApoI	RAATTY	1 cut(s)	366
AspLEI	GCGC	6 cut(s)	78, 94, 116, 181, 349, 451
AspS9I	GGNCC	2 cut(s)	40, 68
AsuHPI	GGTGA	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	555
BanI	GGYRCC	2 cut(s)	304, 346
BbrPI	CACGTG	1 cut(s)	232
BbvI	GCAGC	2 cut(s)	5, 779
BccI	CCATC	4 cut(s)	59, 398, 646, 698
BceAI	ACGGC	3 cut(s)	286, 336, 731
BcoDI	GTCTC	2 cut(s)	305, 678
BfoI	RGCGCY	2 cut(s)	182, 350
BisI	GCNGC	9 cut(s)	19, 79, 186, 350, 384, 396, 399, 447, 768
BlsI	GCNGC	9 cut(s)	20, 80, 187, 351, 385, 397, 400, 448, 769
BmcAI	AGTACT	1 cut(s)	535
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	40, 68
BmiI	GGNNCC	3 cut(s)	42, 306, 348
BmrI	ACTGGG	2 cut(s)	546, 580
BmsI	GCATC	2 cut(s)	181, 757
BmuI	ACTGGG	2 cut(s)	546, 580
BpmI	CTGGAG	1 cut(s)	353
Bpu10I	CCTNAGC	1 cut(s)	82
BpuEI	CTTGAG	2 cut(s)	528, 694
BsaAI	YACGTR	1 cut(s)	232
BsaBI	GATNNNNATC	1 cut(s)	203
BsaHI	GRCGYC	3 cut(s)	153, 167, 347
BsaI	GGTCTC	1 cut(s)	678
BsaJI	CCNNGG	2 cut(s)	354, 598
BsaWI	WCCGGW	2 cut(s)	370, 476
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 140, 570
Bse118I	RCCGGY	3 cut(s)	181, 514, 518
Bse1I	ACTGG	2 cut(s)	541, 586
Bse8I	GATNNNNATC	1 cut(s)	203
BseAI	TCCGGA	1 cut(s)	370
BseDI	CCNNGG	2 cut(s)	354, 598
BseGI	GGATG	2 cut(s)	172, 409
BseJI	GATNNNNATC	1 cut(s)	203
BseLI	CCNNNNNNNGG	3 cut(s)	77, 140, 570
BseMII	CTCAG	2 cut(s)	96, 672
BseNI	ACTGG	2 cut(s)	541, 586
BseRI	GAGGAG	2 cut(s)	251, 262
BseX3I	CGGCCG	1 cut(s)	516
BseXI	GCAGC	2 cut(s)	5, 779
Bsh1236I	CGCG	4 cut(s)	76, 78, 92, 114
Bsh1285I	CGRYCG	3 cut(s)	112, 477, 519
BshFI	GGCC	5 cut(s)	69, 144, 518, 555, 718
BshNI	GGYRCC	2 cut(s)	304, 346
BsiEI	CGRYCG	3 cut(s)	112, 477, 519
BsiSI	CCGG	9 cut(s)	48, 141, 182, 308, 371, 477, 507, 515, 519
BslFI	GGGAC	3 cut(s)	8, 26, 553
BslI	CCNNNNNNNGG	3 cut(s)	77, 140, 570
BsmAI	GTCTC	2 cut(s)	305, 678
BsmBI	CGTCTC	1 cut(s)	305
BsmFI	GGGAC	3 cut(s)	8, 26, 553
BsmI	GAATGC	1 cut(s)	609
BsnI	GGCC	5 cut(s)	69, 144, 518, 555, 718
Bso31I	GGTCTC	1 cut(s)	678
Bsp13I	TCCGGA	1 cut(s)	370
Bsp1407I	TGTACA	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	252
Bsp19I	CCATGG	1 cut(s)	598
BspANI	GGCC	5 cut(s)	69, 144, 518, 555, 718
BspCNI	CTCAG	2 cut(s)	95, 671
BspEI	TCCGGA	1 cut(s)	370
BspFNI	CGCG	4 cut(s)	76, 78, 92, 114
BspLI	GGNNCC	3 cut(s)	42, 306, 348
BspPI	GGATC	1 cut(s)	260
BspT107I	GGYRCC	2 cut(s)	304, 346
BspTNI	GGTCTC	1 cut(s)	678
BsrFI	RCCGGY	3 cut(s)	181, 514, 518
BsrGI	TGTACA	1 cut(s)	297
BsrI	ACTGG	2 cut(s)	541, 586
BssAI	RCCGGY	3 cut(s)	181, 514, 518
BssECI	CCNNGG	2 cut(s)	354, 598
BssMI	GATC	1 cut(s)	252
BssNAI	GTATAC	1 cut(s)	627
BssNI	GRCGYC	3 cut(s)	153, 167, 347
BssT1I	CCWWGG	2 cut(s)	354, 598
Bst1107I	GTATAC	1 cut(s)	627
BstACI	GRCGYC	3 cut(s)	153, 167, 347
BstAUI	TGTACA	1 cut(s)	297
BstBAI	YACGTR	1 cut(s)	232
BstC8I	GCNNGC	8 cut(s)	183, 243, 516, 520, 640, 700, 741, 786
BstDEI	CTNAG	2 cut(s)	82, 658
BstDSI	CCRYGG	1 cut(s)	598
BstF5I	GGATG	2 cut(s)	172, 409
BstFNI	CGCG	4 cut(s)	76, 78, 92, 114
BstH2I	RGCGCY	2 cut(s)	182, 350
BstHHI	GCGC	6 cut(s)	78, 94, 116, 181, 349, 451
BstKTI	GATC	1 cut(s)	255
BstMAI	GTCTC	2 cut(s)	305, 678
BstMBI	GATC	1 cut(s)	252
BstMCI	CGRYCG	3 cut(s)	112, 477, 519
BstNSI	RCATGY	1 cut(s)	646
BstUI	CGCG	4 cut(s)	76, 78, 92, 114
BstV1I	GCAGC	2 cut(s)	5, 779
BstZ17I	GTATAC	1 cut(s)	627
BstZI	CGGCCG	1 cut(s)	516
BsuRI	GGCC	5 cut(s)	69, 144, 518, 555, 718
BtgI	CCRYGG	1 cut(s)	598
BtgZI	GCGATG	2 cut(s)	353, 717
BtsCI	GGATG	2 cut(s)	172, 409
Cac8I	GCNNGC	8 cut(s)	183, 243, 516, 520, 640, 700, 741, 786
CfoI	GCGC	6 cut(s)	78, 94, 116, 181, 349, 451
Cfr10I	RCCGGY	3 cut(s)	181, 514, 518
Cfr13I	GGNCC	2 cut(s)	40, 68
CseI	GACGC	5 cut(s)	10, 98, 156, 161, 322
Csp6I	GTAC	5 cut(s)	223, 298, 433, 534, 662
CviAII	CATG	3 cut(s)	442, 599, 643
CviQI	GTAC	5 cut(s)	223, 298, 433, 534, 662
DdeI	CTNAG	2 cut(s)	82, 658
DinI	GGCGCC	1 cut(s)	348
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
EaeI	YGGCCR	4 cut(s)	142, 516, 553, 716
EagI	CGGCCG	1 cut(s)	516
EciI	GGCGGA	4 cut(s)	281, 338, 401, 416
EclXI	CGGCCG	1 cut(s)	516
Eco130I	CCWWGG	2 cut(s)	354, 598
Eco31I	GGTCTC	1 cut(s)	678
Eco47I	GGWCC	1 cut(s)	40
Eco52I	CGGCCG	1 cut(s)	516
Eco72I	CACGTG	1 cut(s)	232
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	366
EcoT14I	CCWWGG	2 cut(s)	354, 598
EgeI	GGCGCC	1 cut(s)	348
EheI	GGCGCC	1 cut(s)	348
ErhI	CCWWGG	2 cut(s)	354, 598
Esp3I	CGTCTC	1 cut(s)	305
FaeI	CATG	3 cut(s)	445, 602, 646
FaiI	YATR	8 cut(s)	443, 600, 627, 644, 679, 681, 762, 764
FaqI	GGGAC	3 cut(s)	8, 26, 553
FatI	CATG	3 cut(s)	441, 598, 642
FauI	CCCGC	2 cut(s)	5, 109
FauNDI	CATATG	1 cut(s)	679
FblI	GTMKAC	1 cut(s)	626
Fnu4HI	GCNGC	9 cut(s)	19, 79, 186, 350, 384, 396, 399, 447, 768
FokI	GGATG	2 cut(s)	159, 416
Fsp4HI	GCNGC	9 cut(s)	19, 79, 186, 350, 384, 396, 399, 447, 768
GlaI	GCGC	6 cut(s)	77, 93, 115, 180, 348, 450
GluI	GCNGC	9 cut(s)	19, 79, 186, 350, 384, 396, 399, 447, 768
GsuI	CTGGAG	1 cut(s)	353
HaeII	RGCGCY	2 cut(s)	182, 350
HaeIII	GGCC	5 cut(s)	69, 144, 518, 555, 718
HapII	CCGG	9 cut(s)	48, 141, 182, 308, 371, 477, 507, 515, 519
HgaI	GACGC	5 cut(s)	10, 98, 156, 161, 322
HhaI	GCGC	6 cut(s)	78, 94, 116, 181, 349, 451
Hin1I	GRCGYC	3 cut(s)	153, 167, 347
Hin1II	CATG	3 cut(s)	445, 602, 646
Hin6I	GCGC	6 cut(s)	76, 92, 114, 179, 347, 449
HinP1I	GCGC	6 cut(s)	76, 92, 114, 179, 347, 449
HindIII	AAGCTT	1 cut(s)	782
HinfI	GANTC	5 cut(s)	119, 137, 470, 541, 656
HpaII	CCGG	9 cut(s)	48, 141, 182, 308, 371, 477, 507, 515, 519
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	627
Hpy188I	TCNGA	2 cut(s)	163, 426
Hpy188III	TCNNGA	6 cut(s)	134, 256, 371, 649, 711, 778
Hpy8I	GTNNAC	1 cut(s)	627
Hpy99I	CGWCG	5 cut(s)	110, 155, 172, 365, 430
HpyAV	CCTTC	5 cut(s)	31, 253, 337, 451, 484
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	441, 743
HpyF3I	CTNAG	2 cut(s)	82, 658
HpySE526I	ACGT	1 cut(s)	231
Hsp92I	GRCGYC	3 cut(s)	153, 167, 347
Hsp92II	CATG	3 cut(s)	445, 602, 646
HspAI	GCGC	6 cut(s)	76, 92, 114, 179, 347, 449
KasI	GGCGCC	1 cut(s)	346
Kpn2I	TCCGGA	1 cut(s)	370
KroI	GCCGGC	3 cut(s)	181, 514, 518
KroNI	GCCGGC	3 cut(s)	183, 516, 520
Kzo9I	GATC	1 cut(s)	252
LmnI	GCTCC	3 cut(s)	238, 493, 635
Lsp1109I	GCAGC	2 cut(s)	5, 779
LweI	GCATC	2 cut(s)	181, 757
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	1 cut(s)	254
MboI	GATC	1 cut(s)	252
MboII	GAAGA	1 cut(s)	46
MlsI	TGGCCA	1 cut(s)	555
MluCI	AATT	2 cut(s)	191, 366
MluNI	TGGCCA	1 cut(s)	555
Mly113I	GGCGCC	1 cut(s)	347
MlyI	GAGTC	3 cut(s)	464, 535, 650
MmeI	TCCRAC	1 cut(s)	449
Mox20I	TGGCCA	1 cut(s)	555
MreI	CGCCGGCG	1 cut(s)	181
MroI	TCCGGA	1 cut(s)	370
MroNI	GCCGGC	3 cut(s)	181, 514, 518
MscI	TGGCCA	1 cut(s)	555
Msp20I	TGGCCA	1 cut(s)	555
MspI	CCGG	9 cut(s)	48, 141, 182, 308, 371, 477, 507, 515, 519
Mva1269I	GAATGC	1 cut(s)	609
MvnI	CGCG	4 cut(s)	76, 78, 92, 114
NaeI	GCCGGC	3 cut(s)	183, 516, 520
NarI	GGCGCC	1 cut(s)	347
NcoI	CCATGG	1 cut(s)	598
NdeI	CATATG	1 cut(s)	679
NdeII	GATC	1 cut(s)	252
NgoMIV	GCCGGC	3 cut(s)	181, 514, 518
NlaIII	CATG	3 cut(s)	445, 602, 646
NlaIV	GGNNCC	3 cut(s)	42, 306, 348
NmuCI	GTSAC	1 cut(s)	86
NspI	RCATGY	1 cut(s)	646
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	1 cut(s)	609
PdiI	GCCGGC	3 cut(s)	183, 516, 520
PfeI	GAWTC	2 cut(s)	119, 137
PflMI	CCANNNNNTGG	1 cut(s)	570
PkrI	GCNGC	9 cut(s)	20, 80, 187, 351, 385, 397, 400, 448, 769
PleI	GAGTC	3 cut(s)	464, 535, 650
PluTI	GGCGCC	1 cut(s)	350
PmaCI	CACGTG	1 cut(s)	232
PmlI	CACGTG	1 cut(s)	232
PpsI	GAGTC	3 cut(s)	464, 535, 650
Ppu21I	YACGTR	1 cut(s)	232
PpuMI	RGGWCCY	1 cut(s)	40
Psp5II	RGGWCCY	1 cut(s)	40
PspCI	CACGTG	1 cut(s)	232
PspN4I	GGNNCC	3 cut(s)	42, 306, 348
PspPI	GGNCC	2 cut(s)	40, 68
PspPPI	RGGWCCY	1 cut(s)	40
RsaI	GTAC	5 cut(s)	224, 299, 434, 535, 663
RsaNI	GTAC	5 cut(s)	223, 298, 433, 534, 662
SatI	GCNGC	9 cut(s)	19, 79, 186, 350, 384, 396, 399, 447, 768
Sau3AI	GATC	1 cut(s)	252
Sau96I	GGNCC	2 cut(s)	40, 68
ScaI	AGTACT	1 cut(s)	535
SchI	GAGTC	3 cut(s)	464, 535, 650
SfaNI	GCATC	2 cut(s)	181, 757
SfoI	GGCGCC	1 cut(s)	348
SgrAI	CRCCGGYG	1 cut(s)	181
SinI	GGWCC	1 cut(s)	40
SmlI	CTYRAG	2 cut(s)	543, 709
SmoI	CTYRAG	2 cut(s)	543, 709
Sse9I	AATT	2 cut(s)	191, 366
SspDI	GGCGCC	1 cut(s)	346
StyI	CCWWGG	2 cut(s)	354, 598
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	3 cut(s)	218, 468, 473
TasI	AATT	2 cut(s)	191, 366
TatI	WGTACW	2 cut(s)	297, 533
TauI	GCSGC	7 cut(s)	81, 188, 352, 386, 398, 401, 449
TfiI	GAWTC	2 cut(s)	119, 137
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	2 cut(s)	18, 767
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	2 cut(s)	356, 470
TspGWI	ACGGA	2 cut(s)	240, 378
Van91I	CCANNNNNTGG	1 cut(s)	570
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	1 cut(s)	366
XceI	RCATGY	1 cut(s)	646
XmiI	GTMKAC	1 cut(s)	626
ZrmI	AGTACT	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.