Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001703

Physical Location & Seq

Genomic Coordinates Reverse (-)

517439 .. 522862

Gene Structure 5424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0002900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGAGGGATCCTCCTCCTCCTCCTCCTCTTCCTATTCCTCGCCGTCTTCGGCCATCTTCTATGACTTTCTCGACCGAATGCGAAACCCTGCTTCCCTCGATCTCGTCCGGTCCATAAAAAGCTTTATTGTATCGTTTTCGTTTTACCCTGCCAACCCTGAAAATGATGGCAAAAGAGTTCAAGAGTTCTTCGCGACAATGGAAGATTCAATTAGGGATCATCCCTTGTGGGCAGGTGCCACTGATCAAGAAGTTGAAAGTGCAATGGAGGGTTTGGAGAAGTATGTCATGACGAAATTGTTCTCCCGGACCTTTTCTTCATCTCCTGAGGATGCAAAGATTGACCTTGAAGTCTCACAGAAAATACAGTTGTTGCAGACTTTCTTGAAGCCTGAGCATCTCGATATTCCGCTAGTTCTACGCAATGAAGCTTCATGGCTGCTTGCAGAAAAAGAGTTGCAGAAAATCAATGCTTTCAAAGCCCCTCGTGAGAAGCTTCTCTGTATCATGAATTGTTGCAAGGTCATTAACAATCTGTTGCTCAATGCATCAATGTCAGAAAAACATGTACTAGCTGGAGCTGATGACTTCCTTCCTGTCCTTATATATGTTACGATCAAGGCCAATCCTCCACAATTACATTCCAACCTCAAATTTATCCAGTTATATCGAAGGCAGGCAAAACTTGTGTCAGAAGCGGCCTATTACCTCACCAATCTTGTCTCAGCTAAAACATTTATCTCTGAGTTAAATGCTAAATCTCTTTCGATTGATGAAATCGAATTTGAAGAGAATATGCAAGCAGCGAGACTGACCAATAAAGAGACACAAAAGGAGGCCACACACACTCTGGAAGAAATGACAACCTCACAAGATCATGAAGATCCCGGCCCTTCATTGAGATCGCATGATAAAGAAACAAGGGGTGGGTCAAATTACCCCTATATGGACAAAGATGCTGGGGATTTGACAGTTGGAGATGTGGAGAGGTTGCTGAGTGTGTACAAGGAAGTTGTTACCAAGTATACTAGCTTGTGCACCGCTTTTAGGCAGCTTTCATTATCTAGGATAGAAAACCATGTCACTAATTTAGAAGATAGAAACGTCTCATCGACACAATCGGCGGAAACAGGTATGAATTCAGGTCAAAGAGATGGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Mpp10

Protein Analysis

387

Amino Acids

43.59

Weight (kDa)

5.18

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF5601	PF18151	37 - 101	1.4e-16	Domain of unknown function (DUF5601)
VPS9	PF02204	148 - 251	3.7e-32	Vacuolar sorting protein 9 (VPS9) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36750
fragaria_vesca	FvH4_1g13950 FvH4_2g08230 FvH4_2g08230 FvH4_2g08230
malus_domestica	MD02G1152700.v1.1 MD05G1334200.v1.1 MD10G1081100.v1.1 MD10G1309100.v1.1
prunus_persica	Prupe.4G031000_v2.0.a1 Prupe.4G031000_v2.0.a1 Prupe.7G149400_v2.0.a1 Prupe.8G102400_v2.0.a1
pyrus_communis	pycom02g12050 pycom05g30590 pycom10g06420 pycom10g26050 pycom15g23270
rosa_chinensis	RchiOBHm_Chr2g0102261 RchiOBHm_Chr6g0263041 RchiOBHm_Chr6g0263101
rosa_laevigata	RLG00000014375 RLG00000014383 RLG00000017140
rosa_multiflora	Rmu_co8453355.1_g000001 Rmu_sc0002146.1_g000009 Rmu_sc0002479.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140620 Rroxscaffold_7G00204680 Rroxscaffold_7G00204780
rosa_rugosa	Rorug02G0106100 Rorug02G0106100 Rorug06G0002900 Rorug06G0003500
rosa_samantha	Rh2AG154000 Rh2BG160000 Rh2CG159600 Rh2DG159600 Rh6AG122100 Rh6BG115200 Rh6BG116700 Rh6CG113900 Rh6CG115200 Rh6DG103000 Rh6DG103800
rosa_wichuraiana	Rw2G012040 Rw6G010470 Rw6G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	224
AasI	GACNNNNNNGTC	1 cut(s)	350
Acc36I	ACCTGC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	236
AccI	GTMKAC	1 cut(s)	1025
AccII	CGCG	1 cut(s)	194
AciI	CCGC	4 cut(s)	410, 698, 1041, 1124
AclWI	GGATC	4 cut(s)	3, 16, 225, 878
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	3 cut(s)	653, 782, 1138
AfaI	GTAC	2 cut(s)	570, 1004
AfiI	CCNNNNNNNGG	2 cut(s)	946, 1047
AflIII	ACRYGT	1 cut(s)	565
AgsI	TTSAA	7 cut(s)	182, 210, 257, 350, 388, 478, 788
AluBI	AGCT	8 cut(s)	123, 431, 496, 575, 581, 728, 1032, 1054
AluI	AGCT	8 cut(s)	123, 431, 496, 575, 581, 728, 1032, 1054
Alw21I	GWGCWC	1 cut(s)	1040
Alw26I	GTCTC	5 cut(s)	358, 727, 802, 818, 1111
Alw44I	GTGCAC	1 cut(s)	1036
AlwI	GGATC	4 cut(s)	3, 16, 225, 878
AoxI	GGCC	5 cut(s)	51, 621, 699, 837, 889
ApaLI	GTGCAC	1 cut(s)	1036
ApeKI	GCWGC	3 cut(s)	439, 803, 1051
ApoI	RAATTY	3 cut(s)	653, 782, 1138
ArsI	GACNNNNNNTTYG	2 cut(s)	674, 706
Asp700I	GAANNNNTTC	1 cut(s)	299
AspS9I	GGNCC	3 cut(s)	111, 309, 890
AsuC2I	CCSGG	2 cut(s)	307, 888
AsuHPI	GGTGA	1 cut(s)	703
AvaII	GGWCC	2 cut(s)	111, 309
AxyI	CCTNAGG	1 cut(s)	327
BaeGI	GKGCMC	1 cut(s)	1040
BamHI	GGATCC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	236
BauI	CACGAG	1 cut(s)	486
BbsI	GAAGAC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	1040
BbvI	GCAGC	3 cut(s)	426, 815, 1063
BccI	CCATC	3 cut(s)	62, 161, 1148
BceAI	ACGGC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	244
BcnI	CCSGG	2 cut(s)	307, 888
BcoDI	GTCTC	5 cut(s)	358, 727, 802, 818, 1111
BfaI	CTAG	4 cut(s)	413, 572, 1029, 1065
BfuAI	ACCTGC	1 cut(s)	224
BisI	GCNGC	4 cut(s)	440, 699, 804, 1052
BlsI	GCNGC	4 cut(s)	441, 700, 805, 1053
Bme1390I	CCNGG	2 cut(s)	307, 888
Bme18I	GGWCC	2 cut(s)	111, 309
BmgT120I	GGNCC	3 cut(s)	111, 309, 890
BmiI	GGNNCC	2 cut(s)	10, 238
BmrFI	CCNGG	2 cut(s)	307, 888
BmsI	GCATC	4 cut(s)	322, 406, 557, 946
BpiI	GAAGAC	1 cut(s)	39
BplI	GAGNNNNNCTC	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	597
Bpu10I	CCTNAGC	1 cut(s)	393
BpuMI	CCSGG	2 cut(s)	307, 888
BsaWI	WCCGGW	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	2 cut(s)	946, 1047
Bse1I	ACTGG	1 cut(s)	661
Bse21I	CCTNAGG	1 cut(s)	327
Bse3DI	GCAATG	2 cut(s)	270, 430
BseGI	GGATG	2 cut(s)	220, 337
BseLI	CCNNNNNNNGG	2 cut(s)	946, 1047
BseMI	GCAATG	2 cut(s)	270, 430
BseMII	CTCAG	5 cut(s)	318, 384, 735, 738, 986
BseNI	ACTGG	1 cut(s)	661
BseRI	GAGGAG	5 cut(s)	4, 7, 10, 13, 16
BseSI	GKGCMC	1 cut(s)	1040
BseXI	GCAGC	3 cut(s)	426, 815, 1063
BseYI	CCCAGC	1 cut(s)	959
Bsh1236I	CGCG	1 cut(s)	194
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	5 cut(s)	53, 623, 701, 839, 891
BshNI	GGYRCC	1 cut(s)	236
BsiEI	CGRYCG	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	1040
BsiSI	CCGG	3 cut(s)	109, 307, 888
BslI	CCNNNNNNNGG	2 cut(s)	946, 1047
BsmAI	GTCTC	5 cut(s)	358, 727, 802, 818, 1111
BsmBI	CGTCTC	1 cut(s)	1111
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	5 cut(s)	53, 623, 701, 839, 891
Bsp1286I	GDGCHC	1 cut(s)	1040
Bsp1407I	TGTACA	1 cut(s)	1002
Bsp143I	GATC	8 cut(s)	8, 100, 217, 244, 615, 874, 883, 902
Bsp68I	TCGCGA	1 cut(s)	194
BspACI	CCGC	4 cut(s)	410, 698, 1041, 1124
BspANI	GGCC	5 cut(s)	53, 623, 701, 839, 891
BspCNI	CTCAG	5 cut(s)	319, 385, 736, 737, 987
BspFNI	CGCG	1 cut(s)	194
BspHI	TCATGA	3 cut(s)	288, 507, 877
BspLI	GGNNCC	2 cut(s)	10, 238
BspMI	ACCTGC	1 cut(s)	224
BspPI	GGATC	4 cut(s)	3, 16, 225, 878
BspT107I	GGYRCC	1 cut(s)	236
BsrDI	GCAATG	2 cut(s)	270, 430
BsrGI	TGTACA	1 cut(s)	1002
BsrI	ACTGG	1 cut(s)	661
BssMI	GATC	8 cut(s)	8, 100, 217, 244, 615, 874, 883, 902
BssNAI	GTATAC	1 cut(s)	1026
BssSI	CACGAG	1 cut(s)	486
Bst1107I	GTATAC	1 cut(s)	1026
Bst2BI	CACGAG	1 cut(s)	486
Bst4CI	ACNGT	2 cut(s)	369, 973
Bst6I	CTCTTC	2 cut(s)	34, 783
BstAUI	TGTACA	1 cut(s)	1002
BstC8I	GCNNGC	3 cut(s)	444, 678, 801
BstDEI	CTNAG	5 cut(s)	327, 393, 724, 744, 995
BstF5I	GGATG	2 cut(s)	220, 337
BstFNI	CGCG	1 cut(s)	194
BstKTI	GATC	8 cut(s)	11, 103, 220, 247, 618, 877, 886, 905
BstMAI	GTCTC	5 cut(s)	358, 727, 802, 818, 1111
BstMBI	GATC	8 cut(s)	8, 100, 217, 244, 615, 874, 883, 902
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	1 cut(s)	479
BstNSI	RCATGY	1 cut(s)	569
BstSCI	CCNGG	2 cut(s)	305, 886
BstSLI	GKGCMC	1 cut(s)	1040
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	3 cut(s)	426, 815, 1063
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	2 cut(s)	8, 883
BstYI	RGATCY	2 cut(s)	8, 883
BstZ17I	GTATAC	1 cut(s)	1026
Bsu36I	CCTNAGG	1 cut(s)	327
BsuRI	GGCC	5 cut(s)	53, 623, 701, 839, 891
BtsCI	GGATG	2 cut(s)	220, 337
BtsIMutI	CAGTG	1 cut(s)	240
BtuMI	TCGCGA	1 cut(s)	194
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	3 cut(s)	444, 678, 801
CciI	TCATGA	3 cut(s)	288, 507, 877
Cfr13I	GGNCC	3 cut(s)	111, 309, 890
Csp6I	GTAC	2 cut(s)	569, 1003
CviAII	CATG	7 cut(s)	289, 435, 508, 566, 878, 908, 1079
CviQI	GTAC	2 cut(s)	569, 1003
DdeI	CTNAG	5 cut(s)	327, 393, 724, 744, 995
DpnI	GATC	8 cut(s)	10, 102, 219, 246, 617, 876, 885, 904
DpnII	GATC	8 cut(s)	8, 100, 217, 244, 615, 874, 883, 902
DrdI	GACNNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	350
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	2 cut(s)	34, 783
EarI	CTCTTC	2 cut(s)	34, 783
EciI	GGCGGA	1 cut(s)	1139
Eco47I	GGWCC	2 cut(s)	111, 309
Eco81I	CCTNAGG	1 cut(s)	327
EcoRI	GAATTC	1 cut(s)	1138
EcoT22I	ATGCAT	1 cut(s)	550
Esp3I	CGTCTC	1 cut(s)	1111
FaeI	CATG	7 cut(s)	292, 438, 511, 569, 881, 911, 1082
FatI	CATG	7 cut(s)	288, 434, 507, 565, 877, 907, 1078
FbaI	TGATCA	1 cut(s)	244
FblI	GTMKAC	1 cut(s)	1025
Fnu4HI	GCNGC	4 cut(s)	440, 699, 804, 1052
FokI	GGATG	2 cut(s)	207, 344
Fsp4HI	GCNGC	4 cut(s)	440, 699, 804, 1052
FspBI	CTAG	4 cut(s)	413, 572, 1029, 1065
GluI	GCNGC	4 cut(s)	440, 699, 804, 1052
GsaI	CCCAGC	1 cut(s)	963
GsuI	CTGGAG	1 cut(s)	597
HaeIII	GGCC	5 cut(s)	53, 623, 701, 839, 891
HapII	CCGG	3 cut(s)	109, 307, 888
Hin1II	CATG	7 cut(s)	292, 438, 511, 569, 881, 911, 1082
HindIII	AAGCTT	3 cut(s)	121, 429, 494
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	3 cut(s)	109, 307, 888
HphI	GGTGA	1 cut(s)	703
Hpy166II	GTNNAC	3 cut(s)	1003, 1026, 1038
Hpy188I	TCNGA	3 cut(s)	559, 694, 745
Hpy8I	GTNNAC	3 cut(s)	1003, 1026, 1038
HpyAV	CCTTC	3 cut(s)	602, 666, 903
HpyCH4III	ACNGT	2 cut(s)	369, 973
HpyCH4IV	ACGT	1 cut(s)	1104
HpyCH4V	TGCA	9 cut(s)	263, 335, 376, 446, 460, 519, 548, 799, 1038
HpyF10VI	GCNNNNNNNGC	1 cut(s)	479
HpyF3I	CTNAG	5 cut(s)	327, 393, 724, 744, 995
HpySE526I	ACGT	1 cut(s)	1104
Hsp92II	CATG	7 cut(s)	292, 438, 511, 569, 881, 911, 1082
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	8 cut(s)	8, 100, 217, 244, 615, 874, 883, 902
LmnI	GCTCC	1 cut(s)	578
Lsp1109I	GCAGC	3 cut(s)	426, 815, 1063
LweI	GCATC	4 cut(s)	322, 406, 557, 946
MaeI	CTAG	4 cut(s)	413, 572, 1029, 1065
MaeII	ACGT	1 cut(s)	1104
MaeIII	GTNAC	3 cut(s)	610, 1015, 1081
MalI	GATC	8 cut(s)	10, 102, 219, 246, 617, 876, 885, 904
MboI	GATC	8 cut(s)	8, 100, 217, 244, 615, 874, 883, 902
MflI	RGATCY	2 cut(s)	8, 883
MhlI	GDGCHC	1 cut(s)	1040
MluCI	AATT	9 cut(s)	210, 296, 511, 635, 653, 782, 934, 1087, 1138
MmeI	TCCRAC	2 cut(s)	669, 955
Mph1103I	ATGCAT	1 cut(s)	550
MroXI	GAANNNNTTC	1 cut(s)	299
MseI	TTAA	2 cut(s)	528, 749
MspI	CCGG	3 cut(s)	109, 307, 888
MspR9I	CCNGG	2 cut(s)	307, 888
Mva1269I	GAATGC	1 cut(s)	84
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	479
NciI	CCSGG	2 cut(s)	307, 888
NdeII	GATC	8 cut(s)	8, 100, 217, 244, 615, 874, 883, 902
NlaIII	CATG	7 cut(s)	292, 438, 511, 569, 881, 911, 1082
NlaIV	GGNNCC	2 cut(s)	10, 238
NmuCI	GTSAC	1 cut(s)	1081
NruI	TCGCGA	1 cut(s)	194
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	1 cut(s)	569
PagI	TCATGA	3 cut(s)	288, 507, 877
PaqCI	CACCTGC	1 cut(s)	224
PciI	ACATGT	1 cut(s)	565
PctI	GAATGC	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	299
PfeI	GAWTC	1 cut(s)	206
PfoI	TCCNGGA	1 cut(s)	305
PkrI	GCNGC	4 cut(s)	441, 700, 805, 1053
PscI	ACATGT	1 cut(s)	565
PspFI	CCCAGC	1 cut(s)	959
PspN4I	GGNNCC	2 cut(s)	10, 238
PspPI	GGNCC	3 cut(s)	111, 309, 890
PsuI	RGATCY	2 cut(s)	8, 883
RruI	TCGCGA	1 cut(s)	194
RsaI	GTAC	2 cut(s)	570, 1004
RsaNI	GTAC	2 cut(s)	569, 1003
SaqAI	TTAA	2 cut(s)	528, 749
SatI	GCNGC	4 cut(s)	440, 699, 804, 1052
Sau3AI	GATC	8 cut(s)	8, 100, 217, 244, 615, 874, 883, 902
Sau96I	GGNCC	3 cut(s)	111, 309, 890
ScrFI	CCNGG	2 cut(s)	307, 888
SduI	GDGCHC	1 cut(s)	1040
SfaNI	GCATC	4 cut(s)	322, 406, 557, 946
SinI	GGWCC	2 cut(s)	111, 309
Sse9I	AATT	9 cut(s)	210, 296, 511, 635, 653, 782, 934, 1087, 1138
SsiI	CCGC	4 cut(s)	410, 698, 1041, 1124
SspMI	CTAG	4 cut(s)	413, 572, 1029, 1065
StyD4I	CCNGG	2 cut(s)	305, 886
TaaI	ACNGT	2 cut(s)	369, 973
TaiI	ACGT	1 cut(s)	1107
TaqI	TCGA	7 cut(s)	72, 99, 402, 670, 767, 780, 1112
TaqII	GACCGA	1 cut(s)	90
TasI	AATT	9 cut(s)	210, 296, 511, 635, 653, 782, 934, 1087, 1138
TatI	WGTACW	2 cut(s)	568, 1002
TauI	GCSGC	1 cut(s)	701
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	2 cut(s)	528, 749
Tru9I	TTAA	2 cut(s)	528, 749
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	1081
TseI	GCWGC	3 cut(s)	439, 803, 1051
Tsp45I	GTSAC	1 cut(s)	1081
TspDTI	ATGAA	9 cut(s)	309, 423, 441, 524, 789, 885, 894, 1047, 1151
TspRI	CASTG	1 cut(s)	247
VneI	GTGCAC	1 cut(s)	1036
VpaK11BI	GGWCC	2 cut(s)	111, 309
XapI	RAATTY	3 cut(s)	653, 782, 1138
XceI	RCATGY	1 cut(s)	569
XcmI	CCANNNNNNNNNTGG	1 cut(s)	847
XmiI	GTMKAC	1 cut(s)	1025
XmnI	GAANNNNTTC	1 cut(s)	299
XspI	CTAG	4 cut(s)	413, 572, 1029, 1065
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.