Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001703

Physical Location & Seq

Genomic Coordinates Reverse (-)

78858938 .. 78877755

Gene Structure 18818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00140620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGAAAAGGCGGGGGCTGCGTCCCAAGCAAGAAGAAGGTCCCGTCCGGCGTACTCGCCGCCGACGACCCCACGCGCGGCTCACGCGACGCGCCTATTCCCGCCGACGACCGCGCTGATTCCGCCGCCAATTCCAATGTCGTTCCCGATTCCGGCCAAAACTACGCCATTTCGGAGGCGTCGCATCCGGCGGCGGCGGCCAAATTGAGGATATTTATCGTGTTCTACTCGATGTACGGACACGTGGAGGAGCTGGCGAGGAGGATCAAGAAGGGGGTGGACGGCGTGGAGGGAGTGGAGGGGGTGCTGTACAGGGTGCCGGAGACGCTGGCGGCGGAGGTGCTGGGAGGCGATGAAGGCGCCGCCCAAGGACGACGGAATTCCGGAGATTTCGGCGGCGGAGTTGGCGGCGGCGGATGGGGTGTTGTTCGGGTTTCCGACGAGATGAAGGCGTTTTTCGACTCGACCGGAGGGTTGTGGAAGGAGCAGAGCCTCGCCGGAAAGCCGGCCGGGTTTTTTGTTAGTACTGGGACTCAAGGAGGTGGCCAAGAAACCACAGCTTGGACAGCTATCACCCAGTTAGCACACCATGGAATGCTATTTGTTCCCATTGGGTATACTTTCGGAGCTGGCATGTTCAAGATGGACTCAGTACGTGGGGGTTCTCCATATGGTGCTGGTGTTTTCGCTGGCGATGGCTCAAGACGGCCAAGTGAAACAGAGTTGGGGCTTGCAGAGCATCAAGGGAAGTATATGGCAGCAGAAATTTATGGACAAATTATTTATGGTTTAAAAGCAGATAGCTTTTCTCGTGAAGCTACTCTTGGTAGCAAATACACTAAGCACCTCTTTGGAAGATGCCAATTACGAAAGATTTCTGAAGAAAATGAGAAGGGTATTGGTAAAGAAATCTTAGAGATATCCATTGAATGTATGATTACATTTCCTTTCCTTTGTCATTTTAAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003955 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0010181 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044464 GO:0048037 GO:0050662 GO:0055114 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

323

Amino Acids

34.1

Weight (kDa)

6.41

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36750
fragaria_vesca	FvH4_1g13950 FvH4_2g08230 FvH4_2g08230 FvH4_2g08230
malus_domestica	MD02G1152700.v1.1 MD05G1334200.v1.1 MD10G1081100.v1.1 MD10G1309100.v1.1
prunus_persica	Prupe.4G031000_v2.0.a1 Prupe.4G031000_v2.0.a1 Prupe.7G149400_v2.0.a1 Prupe.8G102400_v2.0.a1
pyrus_communis	pycom02g12050 pycom05g30590 pycom10g06420 pycom10g26050 pycom15g23270
rosa_chinensis	RchiOBHm_Chr2g0102261 RchiOBHm_Chr6g0263041 RchiOBHm_Chr6g0263101
rosa_laevigata	RLG00000014375 RLG00000014383 RLG00000017140
rosa_multiflora	Rmu_co8453355.1_g000001 Rmu_sc0002146.1_g000009 Rmu_sc0002479.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140620 Rroxscaffold_7G00204680 Rroxscaffold_7G00204780
rosa_rugosa	Rorug02G0106100 Rorug02G0106100 Rorug06G0002900 Rorug06G0003500
rosa_samantha	Rh2AG154000 Rh2BG160000 Rh2CG159600 Rh2DG159600 Rh6AG122100 Rh6BG115200 Rh6BG116700 Rh6CG113900 Rh6CG115200 Rh6DG103000 Rh6DG103800
rosa_wichuraiana	Rw2G012040 Rw6G010470 Rw6G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	316, 359
AccB7I	CCANNNNNTGG	1 cut(s)	561
AccI	GTMKAC	1 cut(s)	617
AccII	CGCG	5 cut(s)	76, 78, 87, 92, 114
AccIII	TCCGGA	1 cut(s)	383
AclWI	GGATC	1 cut(s)	272
AcoI	YGGCCR	5 cut(s)	154, 198, 507, 544, 707
AcsI	RAATTY	2 cut(s)	379, 765
AcuI	CTGAAG	1 cut(s)	900
AcvI	CACGTG	1 cut(s)	244
AcyI	GRCGYC	2 cut(s)	179, 360
AfaI	GTAC	5 cut(s)	54, 236, 311, 526, 654
AfiI	CCNNNNNNNGG	4 cut(s)	77, 152, 207, 561
AflIII	ACRYGT	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	640, 929
AjuI	GAANNNNNNNTTGG	2 cut(s)	807, 839
AluBI	AGCT	6 cut(s)	253, 560, 569, 629, 804, 818
AluI	AGCT	6 cut(s)	253, 560, 569, 629, 804, 818
Alw26I	GTCTC	1 cut(s)	317
AlwI	GGATC	1 cut(s)	272
Aor13HI	TCCGGA	1 cut(s)	383
AoxI	GGCC	5 cut(s)	154, 198, 507, 544, 707
ApeKI	GCWGC	2 cut(s)	18, 758
ApoI	RAATTY	2 cut(s)	379, 765
Asp700I	GAANNNNTTC	1 cut(s)	874
AspLEI	GCGC	4 cut(s)	78, 94, 116, 362
AspS9I	GGNCC	1 cut(s)	40
AsuC2I	CCSGG	1 cut(s)	511
AsuHPI	GGTGA	1 cut(s)	565
AvaII	GGWCC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	546
BanI	GGYRCC	2 cut(s)	316, 359
BauI	CACGAG	1 cut(s)	810
BbrPI	CACGTG	1 cut(s)	244
BbvI	GCAGC	2 cut(s)	5, 770
BccI	CCATC	3 cut(s)	411, 637, 689
BceAI	ACGGC	2 cut(s)	298, 722
BcnI	CCSGG	1 cut(s)	511
BcoDI	GTCTC	1 cut(s)	317
BfoI	RGCGCY	1 cut(s)	363
BmcAI	AGTACT	1 cut(s)	526
Bme1390I	CCNGG	1 cut(s)	511
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	3 cut(s)	42, 318, 361
BmrFI	CCNGG	1 cut(s)	511
BmrI	ACTGGG	2 cut(s)	537, 571
BmsI	GCATC	3 cut(s)	193, 748, 848
BmuI	ACTGGG	2 cut(s)	537, 571
BpuEI	CTTGAG	2 cut(s)	519, 685
BpuMI	CCSGG	1 cut(s)	511
BsaAI	YACGTR	2 cut(s)	244, 656
BsaBI	GATNNNNATC	1 cut(s)	215
BsaHI	GRCGYC	2 cut(s)	179, 360
BsaJI	CCNNGG	2 cut(s)	367, 589
BsaWI	WCCGGW	2 cut(s)	383, 467
Bsc4I	CCNNNNNNNGG	4 cut(s)	77, 152, 207, 561
Bse118I	RCCGGY	1 cut(s)	505
Bse1I	ACTGG	2 cut(s)	532, 577
Bse8I	GATNNNNATC	1 cut(s)	215
BseAI	TCCGGA	1 cut(s)	383
BseDI	CCNNGG	2 cut(s)	367, 589
BseGI	GGATG	2 cut(s)	184, 422
BseJI	GATNNNNATC	1 cut(s)	215
BseLI	CCNNNNNNNGG	4 cut(s)	77, 152, 207, 561
BseMII	CTCAG	1 cut(s)	663
BseNI	ACTGG	2 cut(s)	532, 577
BseRI	GAGGAG	2 cut(s)	263, 274
BseX3I	CGGCCG	1 cut(s)	507
BseXI	GCAGC	2 cut(s)	5, 770
BseYI	CCCAGC	1 cut(s)	343
Bsh1236I	CGCG	5 cut(s)	76, 78, 87, 92, 114
Bsh1285I	CGRYCG	3 cut(s)	112, 468, 510
BshFI	GGCC	5 cut(s)	156, 200, 509, 546, 709
BshNI	GGYRCC	2 cut(s)	316, 359
BsiEI	CGRYCG	3 cut(s)	112, 468, 510
BsiSI	CCGG	9 cut(s)	48, 153, 188, 320, 384, 468, 498, 506, 510
BslFI	GGGAC	3 cut(s)	8, 26, 544
BslI	CCNNNNNNNGG	4 cut(s)	77, 152, 207, 561
BsmAI	GTCTC	1 cut(s)	317
BsmBI	CGTCTC	1 cut(s)	317
BsmFI	GGGAC	3 cut(s)	8, 26, 544
BsmI	GAATGC	1 cut(s)	600
BsnI	GGCC	5 cut(s)	156, 200, 509, 546, 709
Bsp13I	TCCGGA	1 cut(s)	383
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	1 cut(s)	264
Bsp19I	CCATGG	1 cut(s)	589
BspANI	GGCC	5 cut(s)	156, 200, 509, 546, 709
BspCNI	CTCAG	1 cut(s)	662
BspEI	TCCGGA	1 cut(s)	383
BspFNI	CGCG	5 cut(s)	76, 78, 87, 92, 114
BspLI	GGNNCC	3 cut(s)	42, 318, 361
BspPI	GGATC	1 cut(s)	272
BspT107I	GGYRCC	2 cut(s)	316, 359
BsrFI	RCCGGY	1 cut(s)	505
BsrGI	TGTACA	1 cut(s)	309
BsrI	ACTGG	2 cut(s)	532, 577
BssAI	RCCGGY	1 cut(s)	505
BssECI	CCNNGG	2 cut(s)	367, 589
BssMI	GATC	1 cut(s)	264
BssNAI	GTATAC	1 cut(s)	618
BssNI	GRCGYC	2 cut(s)	179, 360
BssSI	CACGAG	1 cut(s)	810
BssT1I	CCWWGG	2 cut(s)	367, 589
Bst1107I	GTATAC	1 cut(s)	618
Bst2BI	CACGAG	1 cut(s)	810
BstACI	GRCGYC	2 cut(s)	179, 360
BstAUI	TGTACA	1 cut(s)	309
BstBAI	YACGTR	2 cut(s)	244, 656
BstC8I	GCNNGC	6 cut(s)	255, 330, 507, 631, 691, 732
BstDEI	CTNAG	3 cut(s)	649, 840, 913
BstDSI	CCRYGG	1 cut(s)	589
BstF5I	GGATG	2 cut(s)	184, 422
BstFNI	CGCG	5 cut(s)	76, 78, 87, 92, 114
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	4 cut(s)	78, 94, 116, 362
BstKTI	GATC	1 cut(s)	267
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	1 cut(s)	264
BstMCI	CGRYCG	3 cut(s)	112, 468, 510
BstNSI	RCATGY	1 cut(s)	637
BstSCI	CCNGG	1 cut(s)	509
BstUI	CGCG	5 cut(s)	76, 78, 87, 92, 114
BstV1I	GCAGC	2 cut(s)	5, 770
BstZ17I	GTATAC	1 cut(s)	618
BstZI	CGGCCG	1 cut(s)	507
BsuRI	GGCC	5 cut(s)	156, 200, 509, 546, 709
BtgI	CCRYGG	1 cut(s)	589
BtgZI	GCGATG	2 cut(s)	366, 708
BtsCI	GGATG	2 cut(s)	184, 422
Cac8I	GCNNGC	6 cut(s)	255, 330, 507, 631, 691, 732
CfoI	GCGC	4 cut(s)	78, 94, 116, 362
Cfr10I	RCCGGY	1 cut(s)	505
Cfr13I	GGNCC	1 cut(s)	40
CseI	GACGC	4 cut(s)	10, 98, 168, 334
Csp6I	GTAC	5 cut(s)	53, 235, 310, 525, 653
CviAII	CATG	2 cut(s)	590, 634
CviQI	GTAC	5 cut(s)	53, 235, 310, 525, 653
DdeI	CTNAG	3 cut(s)	649, 840, 913
DinI	GGCGCC	1 cut(s)	361
DpnI	GATC	1 cut(s)	266
DpnII	GATC	1 cut(s)	264
DraI	TTTAAA	2 cut(s)	792, 964
EaeI	YGGCCR	5 cut(s)	154, 198, 507, 544, 707
EagI	CGGCCG	1 cut(s)	507
EciI	GGCGGA	4 cut(s)	112, 350, 414, 429
EclXI	CGGCCG	1 cut(s)	507
Eco130I	CCWWGG	2 cut(s)	367, 589
Eco32I	GATATC	1 cut(s)	921
Eco47I	GGWCC	1 cut(s)	40
Eco52I	CGGCCG	1 cut(s)	507
Eco57I	CTGAAG	1 cut(s)	900
Eco72I	CACGTG	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	379
EcoRV	GATATC	1 cut(s)	921
EcoT14I	CCWWGG	2 cut(s)	367, 589
EgeI	GGCGCC	1 cut(s)	361
EheI	GGCGCC	1 cut(s)	361
ErhI	CCWWGG	2 cut(s)	367, 589
Esp3I	CGTCTC	1 cut(s)	317
FaeI	CATG	2 cut(s)	593, 637
FalI	AAGNNNNNCTT	4 cut(s)	807, 839, 833, 865
FaqI	GGGAC	3 cut(s)	8, 26, 544
FatI	CATG	2 cut(s)	589, 633
FauI	CCCGC	2 cut(s)	5, 109
FauNDI	CATATG	1 cut(s)	670
FblI	GTMKAC	1 cut(s)	617
FokI	GGATG	2 cut(s)	171, 429
GlaI	GCGC	4 cut(s)	77, 93, 115, 361
GsaI	CCCAGC	1 cut(s)	347
HaeII	RGCGCY	1 cut(s)	363
HaeIII	GGCC	5 cut(s)	156, 200, 509, 546, 709
HapII	CCGG	9 cut(s)	48, 153, 188, 320, 384, 468, 498, 506, 510
HgaI	GACGC	4 cut(s)	10, 98, 168, 334
HhaI	GCGC	4 cut(s)	78, 94, 116, 362
Hin1I	GRCGYC	2 cut(s)	179, 360
Hin1II	CATG	2 cut(s)	593, 637
Hin6I	GCGC	4 cut(s)	76, 92, 114, 360
HinP1I	GCGC	4 cut(s)	76, 92, 114, 360
HinfI	GANTC	5 cut(s)	119, 149, 461, 532, 647
HpaII	CCGG	9 cut(s)	48, 153, 188, 320, 384, 468, 498, 506, 510
HphI	GGTGA	1 cut(s)	565
Hpy166II	GTNNAC	2 cut(s)	280, 618
Hpy188I	TCNGA	4 cut(s)	175, 439, 626, 880
Hpy188III	TCNNGA	6 cut(s)	146, 268, 384, 640, 702, 812
Hpy8I	GTNNAC	2 cut(s)	280, 618
Hpy99I	CGWCG	6 cut(s)	68, 92, 110, 184, 378, 443
HpyAV	CCTTC	6 cut(s)	31, 265, 350, 442, 475, 886
HpyCH4IV	ACGT	2 cut(s)	243, 655
HpyCH4V	TGCA	1 cut(s)	734
HpyF3I	CTNAG	3 cut(s)	649, 840, 913
HpySE526I	ACGT	2 cut(s)	243, 655
Hsp92I	GRCGYC	2 cut(s)	179, 360
Hsp92II	CATG	2 cut(s)	593, 637
HspAI	GCGC	4 cut(s)	76, 92, 114, 360
KasI	GGCGCC	1 cut(s)	359
Kpn2I	TCCGGA	1 cut(s)	383
KroI	GCCGGC	1 cut(s)	505
KroNI	GCCGGC	1 cut(s)	507
Kzo9I	GATC	1 cut(s)	264
LmnI	GCTCC	3 cut(s)	250, 484, 626
Lsp1109I	GCAGC	2 cut(s)	5, 770
LweI	GCATC	3 cut(s)	193, 748, 848
MaeII	ACGT	2 cut(s)	243, 655
MalI	GATC	1 cut(s)	266
MboI	GATC	1 cut(s)	264
MboII	GAAGA	3 cut(s)	46, 867, 893
MlsI	TGGCCA	1 cut(s)	546
MluCI	AATT	6 cut(s)	130, 203, 379, 765, 777, 863
MluNI	TGGCCA	1 cut(s)	546
Mly113I	GGCGCC	1 cut(s)	360
MlyI	GAGTC	3 cut(s)	455, 526, 641
MmeI	TCCRAC	1 cut(s)	462
Mox20I	TGGCCA	1 cut(s)	546
MroI	TCCGGA	1 cut(s)	383
MroNI	GCCGGC	1 cut(s)	505
MroXI	GAANNNNTTC	1 cut(s)	874
MscI	TGGCCA	1 cut(s)	546
MseI	TTAA	2 cut(s)	791, 963
Msp20I	TGGCCA	1 cut(s)	546
MspI	CCGG	9 cut(s)	48, 153, 188, 320, 384, 468, 498, 506, 510
MspR9I	CCNGG	1 cut(s)	511
Mva1269I	GAATGC	1 cut(s)	600
MvnI	CGCG	5 cut(s)	76, 78, 87, 92, 114
NaeI	GCCGGC	1 cut(s)	507
NarI	GGCGCC	1 cut(s)	360
NciI	CCSGG	1 cut(s)	511
NcoI	CCATGG	1 cut(s)	589
NdeI	CATATG	1 cut(s)	670
NdeII	GATC	1 cut(s)	264
NgoMIV	GCCGGC	1 cut(s)	505
NlaIII	CATG	2 cut(s)	593, 637
NlaIV	GGNNCC	3 cut(s)	42, 318, 361
NspI	RCATGY	1 cut(s)	637
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	1 cut(s)	600
PdiI	GCCGGC	1 cut(s)	507
PdmI	GAANNNNTTC	1 cut(s)	874
PfeI	GAWTC	2 cut(s)	119, 149
PflMI	CCANNNNNTGG	1 cut(s)	561
PleI	GAGTC	3 cut(s)	455, 526, 641
PluTI	GGCGCC	1 cut(s)	363
PmaCI	CACGTG	1 cut(s)	244
PmlI	CACGTG	1 cut(s)	244
PpsI	GAGTC	3 cut(s)	455, 526, 641
Ppu21I	YACGTR	2 cut(s)	244, 656
PpuMI	RGGWCCY	1 cut(s)	40
Psp5II	RGGWCCY	1 cut(s)	40
PspCI	CACGTG	1 cut(s)	244
PspFI	CCCAGC	1 cut(s)	343
PspN4I	GGNNCC	3 cut(s)	42, 318, 361
PspPI	GGNCC	1 cut(s)	40
PspPPI	RGGWCCY	1 cut(s)	40
RsaI	GTAC	5 cut(s)	54, 236, 311, 526, 654
RsaNI	GTAC	5 cut(s)	53, 235, 310, 525, 653
SaqAI	TTAA	2 cut(s)	791, 963
Sau3AI	GATC	1 cut(s)	264
Sau96I	GGNCC	1 cut(s)	40
ScaI	AGTACT	1 cut(s)	526
SchI	GAGTC	3 cut(s)	455, 526, 641
ScrFI	CCNGG	1 cut(s)	511
SfaNI	GCATC	3 cut(s)	193, 748, 848
SfoI	GGCGCC	1 cut(s)	361
SinI	GGWCC	1 cut(s)	40
SmlI	CTYRAG	2 cut(s)	534, 700
SmoI	CTYRAG	2 cut(s)	534, 700
Sse9I	AATT	6 cut(s)	130, 203, 379, 765, 777, 863
SspDI	GGCGCC	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	509
StyI	CCWWGG	2 cut(s)	367, 589
TaiI	ACGT	2 cut(s)	246, 658
TaqI	TCGA	3 cut(s)	230, 459, 464
TasI	AATT	6 cut(s)	130, 203, 379, 765, 777, 863
TatI	WGTACW	2 cut(s)	309, 524
TfiI	GAWTC	2 cut(s)	119, 149
Tru1I	TTAA	2 cut(s)	791, 963
Tru9I	TTAA	2 cut(s)	791, 963
TseI	GCWGC	2 cut(s)	18, 758
TspDTI	ATGAA	2 cut(s)	369, 461
TspGWI	ACGGA	2 cut(s)	252, 391
Van91I	CCANNNNNTGG	1 cut(s)	561
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	2 cut(s)	379, 765
XceI	RCATGY	1 cut(s)	637
XmiI	GTMKAC	1 cut(s)	617
XmnI	GAANNNNTTC	1 cut(s)	874
ZrmI	AGTACT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.