Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001703

Physical Location & Seq

Genomic Coordinates Forward (+)

30664554 .. 30665189

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g30590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGGTGCACCACCAAAGAGTGAAGTGCCTGTTATTTCACCTGAGCAACTTGCTGAGGCTGATGGGATAATCTTCGGTTTCCCTACCAGATTTGGAATGATGGCTGCACAATTTAAAGCATTTTTTGATGCAACTGGAGGTTTATGGCACAAAGGTGCACTTGCAGGCAAGCCTGCTGGACTTTTCTACTGCACTGGATCTCAAGGTGGTGGACAAGAGACTACCCCCTTGACAGCCATTACTCAGTTTACTCACCATGGAATGATCTTTGTCCCAATCGGATACACGGCCGGAGCTGGCATGTTCGAGATGGAACAGGTCAAGGGTGGCAGCCCCTATGGTGCAGGAACTTTTGCTGGGGATGGCACAAGACAACCTTCTGATCTAGAACTAGAAATTGCTTGCCACCAGGGAAAGTACTTTGCTGGCATCGCGAAGAAGCTTAAAGGATCTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

153

Amino Acids

15.8

Weight (kDa)

6.4

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_red	PF03358	15 - 95	5.6e-13	NADPH-dependent FMN reductase
Flavodoxin_2	PF02525	15 - 83	7.9e-06	Flavodoxin-like fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36750
fragaria_vesca	FvH4_1g13950 FvH4_2g08230 FvH4_2g08230 FvH4_2g08230
malus_domestica	MD02G1152700.v1.1 MD05G1334200.v1.1 MD10G1081100.v1.1 MD10G1309100.v1.1
prunus_persica	Prupe.4G031000_v2.0.a1 Prupe.4G031000_v2.0.a1 Prupe.7G149400_v2.0.a1 Prupe.8G102400_v2.0.a1
pyrus_communis	pycom02g12050 pycom05g30590 pycom10g06420 pycom10g26050 pycom15g23270
rosa_chinensis	RchiOBHm_Chr2g0102261 RchiOBHm_Chr6g0263041 RchiOBHm_Chr6g0263101
rosa_laevigata	RLG00000014375 RLG00000014383 RLG00000017140
rosa_multiflora	Rmu_co8453355.1_g000001 Rmu_sc0002146.1_g000009 Rmu_sc0002479.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140620 Rroxscaffold_7G00204680 Rroxscaffold_7G00204780
rosa_rugosa	Rorug02G0106100 Rorug02G0106100 Rorug06G0002900 Rorug06G0003500
rosa_samantha	Rh2AG154000 Rh2BG160000 Rh2CG159600 Rh2DG159600 Rh6AG122100 Rh6BG115200 Rh6BG116700 Rh6CG113900 Rh6CG115200 Rh6DG103000 Rh6DG103800
rosa_wichuraiana	Rw2G012040 Rw6G010470 Rw6G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	434
AclWI	GGATC	2 cut(s)	205, 457
AcoI	YGGCCR	1 cut(s)	288
AfaI	GTAC	1 cut(s)	419
AjnI	CCWGG	1 cut(s)	408
AleI	CACNNNNGTG	1 cut(s)	153
AluBI	AGCT	2 cut(s)	296, 442
AluI	AGCT	2 cut(s)	296, 442
Alw21I	GWGCWC	2 cut(s)	10, 160
Alw26I	GTCTC	1 cut(s)	212
Alw44I	GTGCAC	2 cut(s)	6, 156
AlwI	GGATC	2 cut(s)	205, 457
AoxI	GGCC	1 cut(s)	288
ApaLI	GTGCAC	2 cut(s)	6, 156
ApeKI	GCWGC	2 cut(s)	104, 330
AsuHPI	GGTGA	2 cut(s)	30, 245
BaeGI	GKGCMC	2 cut(s)	10, 160
Bbv12I	GWGCWC	2 cut(s)	10, 160
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	91, 342
BccI	CCATC	4 cut(s)	56, 94, 304, 356
BceAI	ACGGC	1 cut(s)	303
BciT130I	CCWGG	1 cut(s)	410
BciVI	GTATCC	1 cut(s)	275
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	2 cut(s)	386, 392
BfuI	GTATCC	1 cut(s)	275
BisI	GCNGC	2 cut(s)	105, 331
BlsI	GCNGC	2 cut(s)	106, 332
BmcAI	AGTACT	1 cut(s)	419
Bme1390I	CCNGG	1 cut(s)	410
BmrFI	CCNGG	1 cut(s)	410
BmsI	GCATC	2 cut(s)	118, 438
BpmI	CTGGAG	1 cut(s)	156
Bpu10I	CCTNAGC	2 cut(s)	42, 54
BpuEI	CTTGAG	1 cut(s)	186
BsaJI	CCNNGG	2 cut(s)	256, 409
Bse1I	ACTGG	2 cut(s)	139, 199
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	2 cut(s)	256, 409
BseGI	GGATG	1 cut(s)	367
BseMII	CTCAG	3 cut(s)	33, 45, 257
BseNI	ACTGG	2 cut(s)	139, 199
BseSI	GKGCMC	2 cut(s)	10, 160
BseX3I	CGGCCG	1 cut(s)	288
BseXI	GCAGC	2 cut(s)	91, 342
BseYI	CCCAGC	1 cut(s)	356
BsgI	GTGCAG	3 cut(s)	90, 175, 363
Bsh1236I	CGCG	1 cut(s)	434
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	1 cut(s)	290
BsiEI	CGRYCG	1 cut(s)	291
BsiHKAI	GWGCWC	2 cut(s)	10, 160
BsiSI	CCGG	1 cut(s)	291
BslFI	GGGAC	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	290
Bsp1286I	GDGCHC	2 cut(s)	10, 160
Bsp143I	GATC	4 cut(s)	197, 264, 382, 449
Bsp19I	CCATGG	1 cut(s)	256
Bsp68I	TCGCGA	1 cut(s)	434
BspANI	GGCC	1 cut(s)	290
BspCNI	CTCAG	3 cut(s)	34, 46, 256
BspFNI	CGCG	1 cut(s)	434
BspPI	GGATC	2 cut(s)	205, 457
BsrI	ACTGG	2 cut(s)	139, 199
BssECI	CCNNGG	2 cut(s)	256, 409
BssMI	GATC	4 cut(s)	197, 264, 382, 449
BssT1I	CCWWGG	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	410
BstC8I	GCNNGC	6 cut(s)	166, 170, 174, 298, 403, 427
BstDEI	CTNAG	3 cut(s)	42, 54, 243
BstDSI	CCRYGG	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	367
BstFNI	CGCG	1 cut(s)	434
BstKTI	GATC	4 cut(s)	200, 267, 385, 452
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	4 cut(s)	197, 264, 382, 449
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNI	CCWGG	1 cut(s)	410
BstNSI	RCATGY	1 cut(s)	304
BstSCI	CCNGG	1 cut(s)	408
BstSLI	GKGCMC	2 cut(s)	10, 160
BstUI	CGCG	1 cut(s)	434
BstV1I	GCAGC	2 cut(s)	91, 342
BstX2I	RGATCY	2 cut(s)	197, 449
BstYI	RGATCY	2 cut(s)	197, 449
BstZI	CGGCCG	1 cut(s)	288
BsuI	GTATCC	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	290
BtgI	CCRYGG	1 cut(s)	256
BtgZI	GCGATG	1 cut(s)	415
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	192
BtuMI	TCGCGA	1 cut(s)	434
Cac8I	GCNNGC	6 cut(s)	166, 170, 174, 298, 403, 427
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	2 cut(s)	257, 301
CviJI	RGCY	8 cut(s)	59, 104, 172, 236, 290, 296, 333, 442
CviKI_1	RGCY	8 cut(s)	59, 104, 172, 236, 290, 296, 333, 442
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	3 cut(s)	42, 54, 243
DpnI	GATC	4 cut(s)	199, 266, 384, 451
DpnII	GATC	4 cut(s)	197, 264, 382, 449
DraI	TTTAAA	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	288
EagI	CGGCCG	1 cut(s)	288
EclXI	CGGCCG	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	256
Eco52I	CGGCCG	1 cut(s)	288
EcoRII	CCWGG	1 cut(s)	408
EcoT14I	CCWWGG	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	2 cut(s)	260, 304
FaiI	YATR	4 cut(s)	145, 258, 302, 339
FalI	AAGNNNNNCTT	4 cut(s)	144, 176, 361, 393
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	2 cut(s)	256, 300
Fnu4HI	GCNGC	2 cut(s)	105, 331
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	2 cut(s)	105, 331
FspBI	CTAG	2 cut(s)	386, 392
GluI	GCNGC	2 cut(s)	105, 331
GsaI	CCCAGC	1 cut(s)	360
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	1 cut(s)	291
Hin1II	CATG	2 cut(s)	260, 304
HindIII	AAGCTT	1 cut(s)	440
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	2 cut(s)	30, 245
Hpy166II	GTNNAC	4 cut(s)	8, 158, 212, 249
Hpy188I	TCNGA	2 cut(s)	281, 382
Hpy188III	TCNNGA	3 cut(s)	307, 386, 433
Hpy8I	GTNNAC	4 cut(s)	8, 158, 212, 249
HpyAV	CCTTC	1 cut(s)	387
HpyCH4V	TGCA	7 cut(s)	8, 107, 131, 158, 164, 192, 344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	3 cut(s)	42, 54, 243
Hsp92II	CATG	2 cut(s)	260, 304
Kzo9I	GATC	4 cut(s)	197, 264, 382, 449
LmnI	GCTCC	1 cut(s)	293
Lsp1109I	GCAGC	2 cut(s)	91, 342
LweI	GCATC	2 cut(s)	118, 438
MaeI	CTAG	2 cut(s)	386, 392
MalI	GATC	4 cut(s)	199, 266, 384, 451
MboI	GATC	4 cut(s)	197, 264, 382, 449
MboII	GAAGA	2 cut(s)	64, 448
MflI	RGATCY	2 cut(s)	197, 449
MhlI	GDGCHC	2 cut(s)	10, 160
MluCI	AATT	2 cut(s)	110, 396
MnlI	CCTC	2 cut(s)	49, 131
MseI	TTAA	2 cut(s)	114, 444
MslI	CAYNNNNRTG	1 cut(s)	153
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	410
MvaI	CCWGG	1 cut(s)	410
MvnI	CGCG	1 cut(s)	434
MwoI	GCNNNNNNNGC	1 cut(s)	431
NcoI	CCATGG	1 cut(s)	256
NdeII	GATC	4 cut(s)	197, 264, 382, 449
NlaIII	CATG	2 cut(s)	260, 304
NruI	TCGCGA	1 cut(s)	434
NspI	RCATGY	1 cut(s)	304
OliI	CACNNNNGTG	1 cut(s)	153
PkrI	GCNGC	2 cut(s)	106, 332
Psp6I	CCWGG	1 cut(s)	408
PspFI	CCCAGC	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	408
PsuI	RGATCY	2 cut(s)	197, 449
RruI	TCGCGA	1 cut(s)	434
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
RseI	CAYNNNNRTG	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	114, 444
SatI	GCNGC	2 cut(s)	105, 331
Sau3AI	GATC	4 cut(s)	197, 264, 382, 449
ScaI	AGTACT	1 cut(s)	419
ScrFI	CCNGG	1 cut(s)	410
SduI	GDGCHC	2 cut(s)	10, 160
SetI	ASST	8 cut(s)	43, 142, 157, 208, 298, 321, 379, 444
SfaNI	GCATC	2 cut(s)	118, 438
SmiMI	CAYNNNNRTG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
Sse9I	AATT	2 cut(s)	110, 396
SspMI	CTAG	2 cut(s)	386, 392
StyD4I	CCNGG	1 cut(s)	408
StyI	CCWWGG	1 cut(s)	256
TaqI	TCGA	1 cut(s)	306
TasI	AATT	2 cut(s)	110, 396
TatI	WGTACW	1 cut(s)	417
Tru1I	TTAA	2 cut(s)	114, 444
Tru9I	TTAA	2 cut(s)	114, 444
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	2 cut(s)	104, 330
TspRI	CASTG	1 cut(s)	199
VneI	GTGCAC	2 cut(s)	6, 156
XbaI	TCTAGA	1 cut(s)	385
XceI	RCATGY	1 cut(s)	304
XspI	CTAG	2 cut(s)	386, 392
ZrmI	AGTACT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.