Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001703

Physical Location & Seq

Genomic Coordinates Forward (+)

52302969 .. 52304899

Gene Structure 1931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014375

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGGTAAAGGAGGTGGCTGTGTGCCCAGCAAGAATAGGCCACCGGCAGGCGTTGCCGGCGCTGATCTTCCGAACCCAAAAAGCGATGATCTTGTTTCAGACCAAAACCAAACCCAAACCACAGAAACAACAAACCCAATTAAGGATGAAGGGGTTGCAGAGAAAAAGCAACAGAGGAAGAAGCTGAGGGTTTTCATAGTGTTTTACTCAATGTATGGGCATGTGGAGCTGTTGGCCAGAGAGATTAAGAAAGGGGTTGATTCCACTGATGGGGTTGAAGGGGTTCTGTACCGGGTTCCGGAAACGCTGTCGTCTGAGGTGTTGGAGCAGATGAAAGTGCCCAAGAAGGATGATCATGGGGTGCCTGTGATAGTGCCTGAGAGACTGGTGGAGGCTGATGGGGTGTTGTTCGGGTTTCCTACCCGGTATGGGTCAATGGCTGCTCAGATGAAGGCGTTTTTCGACTCCACGGGGGAGCTGTGGAGGGAGCAGAAGCTTGCAGGGGTGCCTGCTGGGTTCTTTGTGAGTACTGGCACACAGGGTGGTGGACAGGAGACTAATGCTTGGACAGCCATTACTCAGTTAGCACACCATGGAATGATATATGTTCCAATTGGCTACACCTTTGGTGCTGGAATGTTCCAAATGGACTCCCTTAGAGGAGGGTCTCCATATGGTTCTGGGGTTCTTTCTGGAGATGGCACAAGGGCACCAACTGAGACAGAGCTCGCTCTTGCAGAGCATCACGGAAAGTACATGGCTACTATTGTCAAGAAGCTTGTACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

263

Amino Acids

28.23

Weight (kDa)

6.39

Isoelectric Point (pI)

29.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavodoxin_1	PF00258	66 - 199	2.4e-11	Flavodoxin
FMN_red	PF03358	77 - 206	9.7e-12	NADPH-dependent FMN reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36750
fragaria_vesca	FvH4_1g13950 FvH4_2g08230 FvH4_2g08230 FvH4_2g08230
malus_domestica	MD02G1152700.v1.1 MD05G1334200.v1.1 MD10G1081100.v1.1 MD10G1309100.v1.1
prunus_persica	Prupe.4G031000_v2.0.a1 Prupe.4G031000_v2.0.a1 Prupe.7G149400_v2.0.a1 Prupe.8G102400_v2.0.a1
pyrus_communis	pycom02g12050 pycom05g30590 pycom10g06420 pycom10g26050 pycom15g23270
rosa_chinensis	RchiOBHm_Chr2g0102261 RchiOBHm_Chr6g0263041 RchiOBHm_Chr6g0263101
rosa_laevigata	RLG00000014375 RLG00000014383 RLG00000017140
rosa_multiflora	Rmu_co8453355.1_g000001 Rmu_sc0002146.1_g000009 Rmu_sc0002479.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140620 Rroxscaffold_7G00204680 Rroxscaffold_7G00204780
rosa_rugosa	Rorug02G0106100 Rorug02G0106100 Rorug06G0002900 Rorug06G0003500
rosa_samantha	Rh2AG154000 Rh2BG160000 Rh2CG159600 Rh2DG159600 Rh6AG122100 Rh6BG115200 Rh6BG116700 Rh6CG113900 Rh6CG115200 Rh6DG103000 Rh6DG103800
rosa_wichuraiana	Rw2G012040 Rw6G010470 Rw6G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	361, 505, 709
AccIII	TCCGGA	1 cut(s)	298
AcoI	YGGCCR	1 cut(s)	234
AdeI	CACNNNGTG	1 cut(s)	542
AfaI	GTAC	4 cut(s)	290, 529, 755, 783
AfiI	CCNNNNNNNGG	5 cut(s)	47, 142, 270, 298, 429
AgsI	TTSAA	1 cut(s)	278
AluBI	AGCT	6 cut(s)	184, 229, 478, 496, 727, 778
AluI	AGCT	6 cut(s)	184, 229, 478, 496, 727, 778
Alw21I	GWGCWC	1 cut(s)	729
Alw26I	GTCTC	4 cut(s)	376, 548, 672, 713
Aor13HI	TCCGGA	1 cut(s)	298
AoxI	GGCC	2 cut(s)	38, 234
ApeKI	GCWGC	1 cut(s)	440
Asp700I	GAANNNNTTC	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	62
AsuC2I	CCSGG	2 cut(s)	293, 424
BaeGI	GKGCMC	3 cut(s)	27, 342, 712
BalI	TGGCCA	1 cut(s)	236
BanI	GGYRCC	3 cut(s)	361, 505, 709
BanII	GRGCYC	1 cut(s)	729
Bbv12I	GWGCWC	1 cut(s)	729
BbvCI	CCTCAGC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	3 cut(s)	263, 392, 692
BclI	TGATCA	1 cut(s)	352
BcnI	CCSGG	2 cut(s)	293, 424
BcoDI	GTCTC	4 cut(s)	376, 548, 672, 713
BfoI	RGCGCY	1 cut(s)	63
BisI	GCNGC	1 cut(s)	441
BlsI	GCNGC	1 cut(s)	442
BmcAI	AGTACT	1 cut(s)	529
Bme1390I	CCNGG	2 cut(s)	293, 424
BmiI	GGNNCC	4 cut(s)	297, 363, 507, 711
BmrFI	CCNGG	2 cut(s)	293, 424
BmsI	GCATC	1 cut(s)	751
BpmI	CTGGAG	1 cut(s)	714
Bpu10I	CCTNAGC	1 cut(s)	185
BpuMI	CCSGG	2 cut(s)	293, 424
BsaI	GGTCTC	1 cut(s)	672
BsaJI	CCNNGG	2 cut(s)	468, 592
BsaWI	WCCGGW	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	5 cut(s)	47, 142, 270, 298, 429
Bse118I	RCCGGY	2 cut(s)	43, 56
Bse1I	ACTGG	2 cut(s)	390, 535
BseAI	TCCGGA	1 cut(s)	298
BseDI	CCNNGG	2 cut(s)	468, 592
BseGI	GGATG	2 cut(s)	151, 355
BseLI	CCNNNNNNNGG	5 cut(s)	47, 142, 270, 298, 429
BseMII	CTCAG	6 cut(s)	176, 306, 369, 458, 593, 708
BseNI	ACTGG	2 cut(s)	390, 535
BseRI	GAGGAG	1 cut(s)	675
BseSI	GKGCMC	3 cut(s)	27, 342, 712
BseXI	GCAGC	1 cut(s)	427
BseYI	CCCAGC	2 cut(s)	26, 512
BshFI	GGCC	2 cut(s)	40, 236
BshNI	GGYRCC	3 cut(s)	361, 505, 709
BsiHKAI	GWGCWC	1 cut(s)	729
BsiSI	CCGG	5 cut(s)	44, 57, 292, 299, 424
BslI	CCNNNNNNNGG	5 cut(s)	47, 142, 270, 298, 429
BsmAI	GTCTC	4 cut(s)	376, 548, 672, 713
BsnI	GGCC	2 cut(s)	40, 236
Bso31I	GGTCTC	1 cut(s)	672
Bsp1286I	GDGCHC	4 cut(s)	27, 342, 712, 729
Bsp13I	TCCGGA	1 cut(s)	298
Bsp1407I	TGTACA	1 cut(s)	781
Bsp143I	GATC	3 cut(s)	64, 88, 352
Bsp19I	CCATGG	1 cut(s)	592
BspANI	GGCC	2 cut(s)	40, 236
BspCNI	CTCAG	6 cut(s)	177, 307, 370, 457, 592, 709
BspEI	TCCGGA	1 cut(s)	298
BspLI	GGNNCC	4 cut(s)	297, 363, 507, 711
BspT107I	GGYRCC	3 cut(s)	361, 505, 709
BspTNI	GGTCTC	1 cut(s)	672
BsrFI	RCCGGY	2 cut(s)	43, 56
BsrGI	TGTACA	1 cut(s)	781
BsrI	ACTGG	2 cut(s)	390, 535
BssAI	RCCGGY	2 cut(s)	43, 56
BssECI	CCNNGG	2 cut(s)	468, 592
BssMI	GATC	3 cut(s)	64, 88, 352
BssT1I	CCWWGG	1 cut(s)	592
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstAUI	TGTACA	1 cut(s)	781
BstC8I	GCNNGC	5 cut(s)	49, 58, 498, 510, 729
BstDEI	CTNAG	7 cut(s)	185, 315, 378, 444, 579, 656, 717
BstDSI	CCRYGG	2 cut(s)	468, 592
BstF5I	GGATG	2 cut(s)	151, 355
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	3 cut(s)	67, 91, 355
BstMAI	GTCTC	4 cut(s)	376, 548, 672, 713
BstMBI	GATC	3 cut(s)	64, 88, 352
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 57, 226, 569
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	2 cut(s)	291, 422
BstSLI	GKGCMC	3 cut(s)	27, 342, 712
BstV1I	GCAGC	1 cut(s)	427
BsuRI	GGCC	2 cut(s)	40, 236
BtgI	CCRYGG	2 cut(s)	468, 592
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	151, 355
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	5 cut(s)	49, 58, 498, 510, 729
CfoI	GCGC	1 cut(s)	62
Cfr10I	RCCGGY	2 cut(s)	43, 56
Csp6I	GTAC	4 cut(s)	289, 528, 754, 782
CviAII	CATG	4 cut(s)	221, 356, 593, 757
CviQI	GTAC	4 cut(s)	289, 528, 754, 782
DdeI	CTNAG	7 cut(s)	185, 315, 378, 444, 579, 656, 717
DpnI	GATC	3 cut(s)	66, 90, 354
DpnII	GATC	3 cut(s)	64, 88, 352
DraIII	CACNNNGTG	1 cut(s)	542
EaeI	YGGCCR	1 cut(s)	234
Ecl136II	GAGCTC	1 cut(s)	727
Eco130I	CCWWGG	1 cut(s)	592
Eco24I	GRGCYC	1 cut(s)	729
Eco31I	GGTCTC	1 cut(s)	672
Eco53kI	GAGCTC	1 cut(s)	727
EcoICRI	GAGCTC	1 cut(s)	727
EcoT14I	CCWWGG	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	729
ErhI	CCWWGG	1 cut(s)	592
FaeI	CATG	4 cut(s)	224, 359, 596, 760
FatI	CATG	4 cut(s)	220, 355, 592, 756
FauNDI	CATATG	1 cut(s)	673
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	441
FokI	GGATG	2 cut(s)	158, 362
FriOI	GRGCYC	1 cut(s)	729
Fsp4HI	GCNGC	1 cut(s)	441
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	1 cut(s)	441
GsaI	CCCAGC	2 cut(s)	30, 516
GsuI	CTGGAG	1 cut(s)	714
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	2 cut(s)	40, 236
HapII	CCGG	5 cut(s)	44, 57, 292, 299, 424
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	4 cut(s)	224, 359, 596, 760
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HindIII	AAGCTT	2 cut(s)	494, 776
HinfI	GANTC	3 cut(s)	260, 464, 650
HpaII	CCGG	5 cut(s)	44, 57, 292, 299, 424
Hpy166II	GTNNAC	1 cut(s)	548
Hpy188I	TCNGA	4 cut(s)	72, 100, 316, 447
Hpy188III	TCNNGA	3 cut(s)	299, 693, 772
Hpy8I	GTNNAC	1 cut(s)	548
HpyAV	CCTTC	4 cut(s)	143, 272, 340, 445
HpyCH4V	TGCA	3 cut(s)	158, 500, 737
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 57, 226, 569
HpyF3I	CTNAG	7 cut(s)	185, 315, 378, 444, 579, 656, 717
Hsp92II	CATG	4 cut(s)	224, 359, 596, 760
HspAI	GCGC	1 cut(s)	60
Kpn2I	TCCGGA	1 cut(s)	298
KroI	GCCGGC	1 cut(s)	56
KroNI	GCCGGC	1 cut(s)	58
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	64, 88, 352
LmnI	GCTCC	4 cut(s)	226, 325, 475, 487
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	1 cut(s)	751
MalI	GATC	3 cut(s)	66, 90, 354
MboI	GATC	3 cut(s)	64, 88, 352
MboII	GAAGA	2 cut(s)	59, 190
MfeI	CAATTG	1 cut(s)	612
MhlI	GDGCHC	4 cut(s)	27, 342, 712, 729
MlsI	TGGCCA	1 cut(s)	236
MluCI	AATT	2 cut(s)	138, 612
MluNI	TGGCCA	1 cut(s)	236
MlyI	GAGTC	2 cut(s)	458, 644
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	8 cut(s)	5, 168, 180, 310, 385, 477, 653, 656
Mox20I	TGGCCA	1 cut(s)	236
MroI	TCCGGA	1 cut(s)	298
MroNI	GCCGGC	1 cut(s)	56
MroXI	GAANNNNTTC	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	236
MseI	TTAA	2 cut(s)	141, 246
Msp20I	TGGCCA	1 cut(s)	236
MspI	CCGG	5 cut(s)	44, 57, 292, 299, 424
MspR9I	CCNGG	2 cut(s)	293, 424
MunI	CAATTG	1 cut(s)	612
MwoI	GCNNNNNNNGC	4 cut(s)	53, 57, 226, 569
NaeI	GCCGGC	1 cut(s)	58
NciI	CCSGG	2 cut(s)	293, 424
NcoI	CCATGG	1 cut(s)	592
NdeI	CATATG	1 cut(s)	673
NdeII	GATC	3 cut(s)	64, 88, 352
NgoMIV	GCCGGC	1 cut(s)	56
NlaIII	CATG	4 cut(s)	224, 359, 596, 760
NlaIV	GGNNCC	4 cut(s)	297, 363, 507, 711
NspI	RCATGY	1 cut(s)	224
PdiI	GCCGGC	1 cut(s)	58
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	442
PleI	GAGTC	2 cut(s)	458, 644
PpsI	GAGTC	2 cut(s)	458, 644
Psp124BI	GAGCTC	1 cut(s)	729
PspFI	CCCAGC	2 cut(s)	26, 512
PspN4I	GGNNCC	4 cut(s)	297, 363, 507, 711
RsaI	GTAC	4 cut(s)	290, 529, 755, 783
RsaNI	GTAC	4 cut(s)	289, 528, 754, 782
SacI	GAGCTC	1 cut(s)	729
SaqAI	TTAA	2 cut(s)	141, 246
SatI	GCNGC	1 cut(s)	441
Sau3AI	GATC	3 cut(s)	64, 88, 352
ScaI	AGTACT	1 cut(s)	529
SchI	GAGTC	2 cut(s)	458, 644
ScrFI	CCNGG	2 cut(s)	293, 424
SduI	GDGCHC	4 cut(s)	27, 342, 712, 729
SetI	ASST	9 cut(s)	16, 186, 231, 321, 480, 498, 626, 729, 780
SfaNI	GCATC	1 cut(s)	751
Sse9I	AATT	2 cut(s)	138, 612
SstI	GAGCTC	1 cut(s)	729
StyD4I	CCNGG	2 cut(s)	291, 422
StyI	CCWWGG	1 cut(s)	592
TaqI	TCGA	1 cut(s)	462
TasI	AATT	2 cut(s)	138, 612
TatI	WGTACW	3 cut(s)	527, 753, 781
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	2 cut(s)	141, 246
Tru9I	TTAA	2 cut(s)	141, 246
TscAI	CASTG	1 cut(s)	271
TseI	GCWGC	1 cut(s)	440
TspDTI	ATGAA	4 cut(s)	162, 184, 347, 464
TspGWI	ACGGA	1 cut(s)	762
TspRI	CASTG	1 cut(s)	271
XceI	RCATGY	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	282
ZrmI	AGTACT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.