Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001703

Physical Location & Seq

Genomic Coordinates Forward (+)

54238132 .. 54239636

Gene Structure 1505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00204780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCTGCTCAGATGAAGGCGTTTTTCGACTCCACGGGGGAGCTGTGGAGGGAGCAGAAGCTTGCAGGGGTGCCTGCTGGGTTCTTTGTGAGTACTGGCACACAGGGTGGTGGACAGGAGACTAATGCAATAATATCTTATGTTATCGATCCCATCCTCATCAAAACTATGTCAATGCATATTTGCTCAGTTGGACAGCCATTACTCAATACTCAGTTAGCACACCATGGAATGATATATGTTCCAATTGGCTACACCTTTGGTGCTGGAATGTTCCAAATGGACTCCCTTAGAGGAGGGTCTCCATATGGTTCTGGGGTTCTTTCTGGAGATGGCACAAGGGCACCAACTGAGACAGAGCTCGCTCTTGCAGAGCATCACGGAAAGTACATGGCTACTATTGTCAAGAAGCTTGTACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

140

Amino Acids

14.95

Weight (kDa)

6.57

Isoelectric Point (pI)

37.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36750
fragaria_vesca	FvH4_1g13950 FvH4_2g08230 FvH4_2g08230 FvH4_2g08230
malus_domestica	MD02G1152700.v1.1 MD05G1334200.v1.1 MD10G1081100.v1.1 MD10G1309100.v1.1
prunus_persica	Prupe.4G031000_v2.0.a1 Prupe.4G031000_v2.0.a1 Prupe.7G149400_v2.0.a1 Prupe.8G102400_v2.0.a1
pyrus_communis	pycom02g12050 pycom05g30590 pycom10g06420 pycom10g26050 pycom15g23270
rosa_chinensis	RchiOBHm_Chr2g0102261 RchiOBHm_Chr6g0263041 RchiOBHm_Chr6g0263101
rosa_laevigata	RLG00000014375 RLG00000014383 RLG00000017140
rosa_multiflora	Rmu_co8453355.1_g000001 Rmu_sc0002146.1_g000009 Rmu_sc0002479.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140620 Rroxscaffold_7G00204680 Rroxscaffold_7G00204780
rosa_rugosa	Rorug02G0106100 Rorug02G0106100 Rorug06G0002900 Rorug06G0003500
rosa_samantha	Rh2AG154000 Rh2BG160000 Rh2CG159600 Rh2DG159600 Rh6AG122100 Rh6BG115200 Rh6BG116700 Rh6CG113900 Rh6CG115200 Rh6DG103000 Rh6DG103800
rosa_wichuraiana	Rw2G012040 Rw6G010470 Rw6G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	70, 343
AclWI	GGATC	1 cut(s)	143
AdeI	CACNNNGTG	1 cut(s)	107
AfaI	GTAC	3 cut(s)	94, 389, 417
AluBI	AGCT	4 cut(s)	43, 61, 361, 412
AluI	AGCT	4 cut(s)	43, 61, 361, 412
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	3 cut(s)	113, 306, 347
AlwI	GGATC	1 cut(s)	143
ApeKI	GCWGC	1 cut(s)	5
BaeGI	GKGCMC	1 cut(s)	346
BanI	GGYRCC	2 cut(s)	70, 343
BanII	GRGCYC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	363
BccI	CCATC	2 cut(s)	161, 326
BcoDI	GTCTC	3 cut(s)	113, 306, 347
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmcAI	AGTACT	1 cut(s)	94
BmiI	GGNNCC	2 cut(s)	72, 345
BmsI	GCATC	1 cut(s)	385
BpmI	CTGGAG	1 cut(s)	348
Bsa29I	ATCGAT	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	33, 226
Bse1I	ACTGG	1 cut(s)	100
BseCI	ATCGAT	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	33, 226
BseGI	GGATG	1 cut(s)	153
BseMII	CTCAG	4 cut(s)	23, 201, 227, 342
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	309
BseSI	GKGCMC	1 cut(s)	346
BseYI	CCCAGC	1 cut(s)	77
BshNI	GGYRCC	2 cut(s)	70, 343
BshVI	ATCGAT	1 cut(s)	147
BsiHKAI	GWGCWC	1 cut(s)	363
BsmAI	GTCTC	3 cut(s)	113, 306, 347
Bso31I	GGTCTC	1 cut(s)	306
Bsp1286I	GDGCHC	2 cut(s)	346, 363
Bsp1407I	TGTACA	1 cut(s)	415
Bsp143I	GATC	1 cut(s)	148
Bsp19I	CCATGG	1 cut(s)	226
BspCNI	CTCAG	4 cut(s)	22, 200, 226, 343
BspDI	ATCGAT	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	72, 345
BspPI	GGATC	1 cut(s)	143
BspT107I	GGYRCC	2 cut(s)	70, 343
BspTNI	GGTCTC	1 cut(s)	306
BsrGI	TGTACA	1 cut(s)	415
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	33, 226
BssMI	GATC	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	226
BstAUI	TGTACA	1 cut(s)	415
BstC8I	GCNNGC	3 cut(s)	63, 75, 363
BstDEI	CTNAG	5 cut(s)	9, 187, 213, 290, 351
BstDSI	CCRYGG	2 cut(s)	33, 226
BstF5I	GGATG	1 cut(s)	153
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	3 cut(s)	113, 306, 347
BstMBI	GATC	1 cut(s)	148
BstSLI	GKGCMC	1 cut(s)	346
Bsu15I	ATCGAT	1 cut(s)	147
BsuTUI	ATCGAT	1 cut(s)	147
BtgI	CCRYGG	2 cut(s)	33, 226
BtsCI	GGATG	1 cut(s)	153
Cac8I	GCNNGC	3 cut(s)	63, 75, 363
ClaI	ATCGAT	1 cut(s)	147
Csp6I	GTAC	3 cut(s)	93, 388, 416
CviAII	CATG	2 cut(s)	227, 391
CviJI	RGCY	8 cut(s)	5, 43, 61, 199, 252, 361, 395, 412
CviKI_1	RGCY	8 cut(s)	5, 43, 61, 199, 252, 361, 395, 412
CviQI	GTAC	3 cut(s)	93, 388, 416
DdeI	CTNAG	5 cut(s)	9, 187, 213, 290, 351
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
DraIII	CACNNNGTG	1 cut(s)	107
Ecl136II	GAGCTC	1 cut(s)	361
Eco130I	CCWWGG	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	363
Eco31I	GGTCTC	1 cut(s)	306
Eco53kI	GAGCTC	1 cut(s)	361
EcoICRI	GAGCTC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	226
EcoT22I	ATGCAT	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	2 cut(s)	230, 394
FaiI	YATR	9 cut(s)	141, 170, 180, 228, 238, 240, 307, 309, 392
FatI	CATG	2 cut(s)	226, 390
FauNDI	CATATG	1 cut(s)	307
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	140
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	81
GsuI	CTGGAG	1 cut(s)	348
Hin1II	CATG	2 cut(s)	230, 394
HindIII	AAGCTT	2 cut(s)	59, 410
HinfI	GANTC	2 cut(s)	29, 284
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	2 cut(s)	327, 406
Hpy8I	GTNNAC	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	10
HpyCH4V	TGCA	4 cut(s)	65, 128, 178, 371
HpyF3I	CTNAG	5 cut(s)	9, 187, 213, 290, 351
Hsp92II	CATG	2 cut(s)	230, 394
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	2 cut(s)	40, 52
LpnPI	CCDG	9 cut(s)	51, 63, 81, 87, 89, 101, 252, 300, 312
LweI	GCATC	1 cut(s)	385
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MfeI	CAATTG	1 cut(s)	246
MhlI	GDGCHC	2 cut(s)	346, 363
MluCI	AATT	1 cut(s)	246
MlyI	GAGTC	2 cut(s)	23, 278
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	4 cut(s)	42, 167, 287, 290
Mph1103I	ATGCAT	1 cut(s)	180
MunI	CAATTG	1 cut(s)	246
NcoI	CCATGG	1 cut(s)	226
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	2 cut(s)	230, 394
NlaIV	GGNNCC	2 cut(s)	72, 345
NsiI	ATGCAT	1 cut(s)	180
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	23, 278
PpsI	GAGTC	2 cut(s)	23, 278
Psp124BI	GAGCTC	1 cut(s)	363
PspFI	CCCAGC	1 cut(s)	77
PspN4I	GGNNCC	2 cut(s)	72, 345
RsaI	GTAC	3 cut(s)	94, 389, 417
RsaNI	GTAC	3 cut(s)	93, 388, 416
SacI	GAGCTC	1 cut(s)	363
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	148
ScaI	AGTACT	1 cut(s)	94
SchI	GAGTC	2 cut(s)	23, 278
SduI	GDGCHC	2 cut(s)	346, 363
SetI	ASST	5 cut(s)	45, 63, 260, 363, 414
SfaNI	GCATC	1 cut(s)	385
Sse9I	AATT	1 cut(s)	246
SstI	GAGCTC	1 cut(s)	363
StyI	CCWWGG	1 cut(s)	226
TaqI	TCGA	2 cut(s)	27, 147
TasI	AATT	1 cut(s)	246
TatI	WGTACW	3 cut(s)	92, 387, 415
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	29
TspGWI	ACGGA	1 cut(s)	396
ZrmI	AGTACT	1 cut(s)	94
Zsp2I	ATGCAT	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.