pycom15g23270

Minor allergen Alt a

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
17328687 .. 17330111
1425 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g23270.1

Sequence Viewer

Length: 798 bp
ATGGGGAAAGGCGGGGGCTGTGTCCCAAGCAAGAAGAAAGTCCTCTCCGATGCCGCACCAATTCCCGACACCGCCAATAATGCCTCGCGAAGCCCGGCGCCGGCTTCCACCGGCGGCACTCCCAGTTCCGCTCCCAAGCCAAACAACGTTTCTGTCGTCGCCGAATCGCACCCGAATCCGGGCCCGGTTACGAAATTGAGGATATTCATAGTGTTCTACTCGATGTACGGGCACGTGGAGGAGCTCGCCAGGCGGATGAAGAAGGGGGTTGACGGCGTGGAGGGGGCGGAGGGGGTTCTGTACCGGGTGCCCGAGACGCTGCCGGCCGAGGTTTTGGAGAAGATGAAGGCGCCGCCCAAGGACCATGAAATTCCGGAGATTTCGGCGGCGGAGCTGACGGGGGCGGACGGTGTTTTGTTTGGGTTTCCGACGAGGTTCGGGAGCATGGCGGCGCAGATGAAGGCGTTTTTCGACTCGACCGGGCAGCTGTGGAAGGAGCAGACCCTGGCTGGGAAGCCTGGTGGGTTCTTTGTCAGCACCGGGACTCAAGGCGGCGGCCAAGAAACCACTCTATGGACGGCAATCACCCAACTAGCACACCACGGAATGCTGTTTGTTCCCGTTGGGTATACTTTTGGAGCTGGCATGTTTAAGATGGACTCTGTAAGAGGGGGTTCTCCGTATGGCGCTGGTGTCTTTGCTGGTGACGGCACAAGAGGCGCAAGTGAAACTGAGTTGGCTCTTGCAGAGCATCAGGGGAAGTATATGGCATCAGTAGTCAAGAAACTTGCCACTTGA

Protein Analysis

266

Amino Acids

27.65

Weight (kDa)

8.53

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Flavodoxin_1 PF00258 70 - 202 2.4e-11 Flavodoxin
FMN_red PF03358 81 - 209 1.5e-13 NADPH-dependent FMN reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 97, 307, 349
AccB7I CCANNNNNTGG 1 cut(s) 573
AccBSI CCGCTC 1 cut(s) 131
AccI GTMKAC 1 cut(s) 629
AccII CGCG 1 cut(s) 88
AccIII TCCGGA 1 cut(s) 373
AclI AACGTT 1 cut(s) 147
AcoI YGGCCR 2 cut(s) 324, 556
AcsI RAATTY 1 cut(s) 369
AcvI CACGTG 1 cut(s) 235
AcyI GRCGYC 2 cut(s) 98, 350
AfaI GTAC 2 cut(s) 227, 302
AfiI CCNNNNNNNGG 5 cut(s) 100, 178, 179, 510, 573
AjnI CCWGG 3 cut(s) 248, 504, 517
AjuI GAANNNNNNNTTGG 2 cut(s) 133, 165
AluBI AGCT 4 cut(s) 244, 394, 487, 641
AluI AGCT 4 cut(s) 244, 394, 487, 641
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 308
AlwNI CAGNNNCTG 1 cut(s) 505
Ama87I CYCGRG 1 cut(s) 311
Aor13HI TCCGGA 1 cut(s) 373
AoxI GGCC 3 cut(s) 181, 324, 556
ApaI GGGCCC 1 cut(s) 185
ApeKI GCWGC 2 cut(s) 319, 484
ApoI RAATTY 1 cut(s) 369
AspLEI GCGC 5 cut(s) 100, 352, 454, 689, 722
AspS9I GGNCC 3 cut(s) 181, 182, 361
AsuC2I CCSGG 6 cut(s) 95, 180, 185, 305, 481, 541
AsuHPI GGTGA 2 cut(s) 577, 716
AvaI CYCGRG 1 cut(s) 311
AvaII GGWCC 1 cut(s) 361
BaeGI GKGCMC 3 cut(s) 185, 234, 312
BanI GGYRCC 3 cut(s) 97, 307, 349
BanII GRGCYC 2 cut(s) 185, 246
BbrPI CACGTG 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 2 cut(s) 306, 496
BccI CCATC 1 cut(s) 649
BceAI ACGGC 3 cut(s) 289, 594, 724
BciT130I CCWGG 3 cut(s) 250, 506, 519
BcnI CCSGG 6 cut(s) 95, 180, 185, 305, 481, 541
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 1 cut(s) 593
BfoI RGCGCY 3 cut(s) 101, 353, 690
BisI GCNGC 9 cut(s) 54, 115, 320, 353, 387, 450, 485, 553, 556
BlsI GCNGC 9 cut(s) 55, 116, 321, 354, 388, 451, 486, 554, 557
Bme1390I CCNGG 9 cut(s) 95, 180, 185, 250, 305, 481, 506, 519, 541
Bme18I GGWCC 1 cut(s) 361
BmeT110I CYCGRG 1 cut(s) 311
BmgT120I GGNCC 3 cut(s) 181, 182, 361
BmiI GGNNCC 4 cut(s) 99, 183, 309, 351
BmrFI CCNGG 9 cut(s) 95, 180, 185, 250, 305, 481, 506, 519, 541
BmrI ACTGGG 1 cut(s) 117
BmsI GCATC 3 cut(s) 40, 760, 779
BmuI ACTGGG 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 531
BpuMI CCSGG 6 cut(s) 95, 180, 185, 305, 481, 541
BsaAI YACGTR 1 cut(s) 235
BsaHI GRCGYC 2 cut(s) 98, 350
BsaJI CCNNGG 4 cut(s) 327, 357, 504, 601
BsaWI WCCGGW 1 cut(s) 373
Bsc4I CCNNNNNNNGG 5 cut(s) 100, 178, 179, 510, 573
Bse118I RCCGGY 3 cut(s) 100, 110, 322
Bse1I ACTGG 1 cut(s) 123
BseAI TCCGGA 1 cut(s) 373
BseBI CCWGG 3 cut(s) 250, 506, 519
BseDI CCNNGG 4 cut(s) 327, 357, 504, 601
BseGI GGATG 1 cut(s) 261
BseLI CCNNNNNNNGG 5 cut(s) 100, 178, 179, 510, 573
BseMII CTCAG 1 cut(s) 723
BseNI ACTGG 1 cut(s) 123
BseRI GAGGAG 1 cut(s) 254
BseSI GKGCMC 3 cut(s) 185, 234, 312
BseX3I CGGCCG 1 cut(s) 324
BseXI GCAGC 2 cut(s) 306, 496
BseYI CCCAGC 1 cut(s) 509
Bsh1236I CGCG 1 cut(s) 88
Bsh1285I CGRYCG 2 cut(s) 327, 480
BshFI GGCC 3 cut(s) 183, 326, 558
BshNI GGYRCC 3 cut(s) 97, 307, 349
BsiEI CGRYCG 2 cut(s) 327, 480
BsiHKAI GWGCWC 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 311
BslFI GGGAC 2 cut(s) 8, 556
BslI CCNNNNNNNGG 5 cut(s) 100, 178, 179, 510, 573
BsmAI GTCTC 1 cut(s) 308
BsmBI CGTCTC 1 cut(s) 308
BsmFI GGGAC 2 cut(s) 8, 556
BsmI GAATGC 1 cut(s) 612
BsnI GGCC 3 cut(s) 183, 326, 558
BsoBI CYCGRG 1 cut(s) 311
Bsp120I GGGCCC 1 cut(s) 181
Bsp1286I GDGCHC 4 cut(s) 185, 234, 246, 312
Bsp13I TCCGGA 1 cut(s) 373
Bsp68I TCGCGA 1 cut(s) 88
BspANI GGCC 3 cut(s) 183, 326, 558
BspCNI CTCAG 1 cut(s) 724
BspEI TCCGGA 1 cut(s) 373
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 4 cut(s) 99, 183, 309, 351
BspT107I GGYRCC 3 cut(s) 97, 307, 349
BsrBI CCGCTC 1 cut(s) 131
BsrFI RCCGGY 3 cut(s) 100, 110, 322
BsrI ACTGG 1 cut(s) 123
BssAI RCCGGY 3 cut(s) 100, 110, 322
BssECI CCNNGG 4 cut(s) 327, 357, 504, 601
BssNAI GTATAC 1 cut(s) 630
BssNI GRCGYC 2 cut(s) 98, 350
BssT1I CCWWGG 1 cut(s) 357
Bst1107I GTATAC 1 cut(s) 630
Bst2UI CCWGG 3 cut(s) 250, 506, 519
Bst4CI ACNGT 1 cut(s) 410
BstACI GRCGYC 2 cut(s) 98, 350
BstBAI YACGTR 1 cut(s) 235
BstC8I GCNNGC 4 cut(s) 102, 246, 324, 643
BstDEI CTNAG 1 cut(s) 732
BstDSI CCRYGG 1 cut(s) 601
BstF5I GGATG 1 cut(s) 261
BstFNI CGCG 1 cut(s) 88
BstH2I RGCGCY 3 cut(s) 101, 353, 690
BstHHI GCGC 5 cut(s) 100, 352, 454, 689, 722
BstMAI GTCTC 1 cut(s) 308
BstMCI CGRYCG 2 cut(s) 327, 480
BstMWI GCNNNNNNNGC 4 cut(s) 80, 250, 316, 717
BstNI CCWGG 3 cut(s) 250, 506, 519
BstNSI RCATGY 1 cut(s) 649
BstSCI CCNGG 9 cut(s) 93, 178, 183, 248, 303, 479, 504, 517, 539
BstSLI GKGCMC 3 cut(s) 185, 234, 312
BstUI CGCG 1 cut(s) 88
BstV1I GCAGC 2 cut(s) 306, 496
BstZ17I GTATAC 1 cut(s) 630
BstZI CGGCCG 1 cut(s) 324
BsuRI GGCC 3 cut(s) 183, 326, 558
BtgI CCRYGG 1 cut(s) 601
BtsCI GGATG 1 cut(s) 261
BtuMI TCGCGA 1 cut(s) 88
Cac8I GCNNGC 4 cut(s) 102, 246, 324, 643
CaiI CAGNNNCTG 1 cut(s) 505
CfoI GCGC 5 cut(s) 100, 352, 454, 689, 722
Cfr10I RCCGGY 3 cut(s) 100, 110, 322
Cfr13I GGNCC 3 cut(s) 181, 182, 361
CseI GACGC 1 cut(s) 325
Csp6I GTAC 2 cut(s) 226, 301
CviAII CATG 3 cut(s) 365, 445, 646
CviQI GTAC 2 cut(s) 226, 301
DdeI CTNAG 1 cut(s) 732
DinI GGCGCC 2 cut(s) 99, 351
EaeI YGGCCR 2 cut(s) 324, 556
EagI CGGCCG 1 cut(s) 324
EciI GGCGGA 4 cut(s) 268, 302, 404, 419
Ecl136II GAGCTC 1 cut(s) 244
EclXI CGGCCG 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 357
Eco24I GRGCYC 2 cut(s) 185, 246
Eco47I GGWCC 1 cut(s) 361
Eco52I CGGCCG 1 cut(s) 324
Eco53kI GAGCTC 1 cut(s) 244
Eco72I CACGTG 1 cut(s) 235
Eco88I CYCGRG 1 cut(s) 311
EcoICRI GAGCTC 1 cut(s) 244
EcoRII CCWGG 3 cut(s) 248, 504, 517
EcoT14I CCWWGG 1 cut(s) 357
EcoT38I GRGCYC 2 cut(s) 185, 246
EgeI GGCGCC 2 cut(s) 99, 351
EheI GGCGCC 2 cut(s) 99, 351
ErhI CCWWGG 1 cut(s) 357
Esp3I CGTCTC 1 cut(s) 308
FaeI CATG 3 cut(s) 368, 448, 649
FaiI YATR 9 cut(s) 209, 366, 446, 574, 630, 647, 684, 765, 767
FaqI GGGAC 2 cut(s) 8, 556
FatI CATG 3 cut(s) 364, 444, 645
FauI CCCGC 1 cut(s) 5
FblI GTMKAC 1 cut(s) 629
Fnu4HI GCNGC 9 cut(s) 54, 115, 320, 353, 387, 450, 485, 553, 556
FokI GGATG 1 cut(s) 268
FriOI GRGCYC 2 cut(s) 185, 246
Fsp4HI GCNGC 9 cut(s) 54, 115, 320, 353, 387, 450, 485, 553, 556
FspBI CTAG 1 cut(s) 593
GlaI GCGC 5 cut(s) 99, 351, 453, 688, 721
GluI GCNGC 9 cut(s) 54, 115, 320, 353, 387, 450, 485, 553, 556
GsaI CCCAGC 1 cut(s) 513
HaeII RGCGCY 3 cut(s) 101, 353, 690
HaeIII GGCC 3 cut(s) 183, 326, 558
HgaI GACGC 1 cut(s) 325
HhaI GCGC 5 cut(s) 100, 352, 454, 689, 722
Hin1I GRCGYC 2 cut(s) 98, 350
Hin1II CATG 3 cut(s) 368, 448, 649
Hin6I GCGC 5 cut(s) 98, 350, 452, 687, 720
HinP1I GCGC 5 cut(s) 98, 350, 452, 687, 720
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 5 cut(s) 164, 175, 473, 544, 659
HphI GGTGA 2 cut(s) 577, 716
Hpy166II GTNNAC 2 cut(s) 271, 630
Hpy188I TCNGA 2 cut(s) 49, 429
Hpy188III TCNNGA 5 cut(s) 65, 87, 374, 439, 781
Hpy8I GTNNAC 2 cut(s) 271, 630
Hpy99I CGWCG 2 cut(s) 161, 433
HpyAV CCTTC 4 cut(s) 256, 340, 454, 487
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4IV ACGT 2 cut(s) 147, 234
HpyCH4V TGCA 1 cut(s) 746
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 250, 316, 717
HpyF3I CTNAG 1 cut(s) 732
HpySE526I ACGT 2 cut(s) 147, 234
Hsp92I GRCGYC 2 cut(s) 98, 350
Hsp92II CATG 3 cut(s) 368, 448, 649
HspAI GCGC 5 cut(s) 98, 350, 452, 687, 720
KasI GGCGCC 2 cut(s) 97, 349
Kpn2I TCCGGA 1 cut(s) 373
KroI GCCGGC 2 cut(s) 100, 322
KroNI GCCGGC 2 cut(s) 102, 324
LmnI GCTCC 6 cut(s) 136, 241, 391, 441, 496, 638
Lsp1109I GCAGC 2 cut(s) 306, 496
LweI GCATC 3 cut(s) 40, 760, 779
MaeI CTAG 1 cut(s) 593
MaeII ACGT 2 cut(s) 147, 234
MaeIII GTNAC 2 cut(s) 187, 704
MbiI CCGCTC 1 cut(s) 131
MboII GAAGA 3 cut(s) 46, 271, 352
MhlI GDGCHC 4 cut(s) 185, 234, 246, 312
MluCI AATT 3 cut(s) 60, 194, 369
Mly113I GGCGCC 2 cut(s) 98, 350
MlyI GAGTC 3 cut(s) 467, 538, 653
MmeI TCCRAC 1 cut(s) 452
MroI TCCGGA 1 cut(s) 373
MroNI GCCGGC 2 cut(s) 100, 322
MseI TTAA 1 cut(s) 651
MspA1I CMGCKG 1 cut(s) 487
MspR9I CCNGG 9 cut(s) 95, 180, 185, 250, 305, 481, 506, 519, 541
Mva1269I GAATGC 1 cut(s) 612
MvaI CCWGG 3 cut(s) 250, 506, 519
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 4 cut(s) 80, 250, 316, 717
NaeI GCCGGC 2 cut(s) 102, 324
NarI GGCGCC 2 cut(s) 98, 350
NciI CCSGG 6 cut(s) 95, 180, 185, 305, 481, 541
NgoMIV GCCGGC 2 cut(s) 100, 322
NlaIII CATG 3 cut(s) 368, 448, 649
NlaIV GGNNCC 4 cut(s) 99, 183, 309, 351
NmeAIII GCCGAG 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 704
NruI TCGCGA 1 cut(s) 88
NspI RCATGY 1 cut(s) 649
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PctI GAATGC 1 cut(s) 612
PdiI GCCGGC 2 cut(s) 102, 324
PfeI GAWTC 2 cut(s) 164, 175
PflMI CCANNNNNTGG 1 cut(s) 573
PkrI GCNGC 9 cut(s) 55, 116, 321, 354, 388, 451, 486, 554, 557
PleI GAGTC 3 cut(s) 467, 538, 653
PluTI GGCGCC 2 cut(s) 101, 353
PmaCI CACGTG 1 cut(s) 235
PmlI CACGTG 1 cut(s) 235
PpsI GAGTC 3 cut(s) 467, 538, 653
Ppu21I YACGTR 1 cut(s) 235
Psp124BI GAGCTC 1 cut(s) 246
Psp1406I AACGTT 1 cut(s) 147
Psp6I CCWGG 3 cut(s) 248, 504, 517
PspCI CACGTG 1 cut(s) 235
PspFI CCCAGC 1 cut(s) 509
PspGI CCWGG 3 cut(s) 248, 504, 517
PspN4I GGNNCC 4 cut(s) 99, 183, 309, 351
PspOMI GGGCCC 1 cut(s) 181
PspPI GGNCC 3 cut(s) 181, 182, 361
PstNI CAGNNNCTG 1 cut(s) 505
PvuII CAGCTG 1 cut(s) 487
RruI TCGCGA 1 cut(s) 88
RsaI GTAC 2 cut(s) 227, 302
RsaNI GTAC 2 cut(s) 226, 301
SacI GAGCTC 1 cut(s) 246
SaqAI TTAA 1 cut(s) 651
SatI GCNGC 9 cut(s) 54, 115, 320, 353, 387, 450, 485, 553, 556
Sau96I GGNCC 3 cut(s) 181, 182, 361
SchI GAGTC 3 cut(s) 467, 538, 653
ScrFI CCNGG 9 cut(s) 95, 180, 185, 250, 305, 481, 506, 519, 541
SduI GDGCHC 4 cut(s) 185, 234, 246, 312
SetI ASST 8 cut(s) 150, 237, 246, 333, 396, 437, 489, 643
SfaNI GCATC 3 cut(s) 40, 760, 779
SfoI GGCGCC 2 cut(s) 99, 351
SgrAI CRCCGGYG 1 cut(s) 110
SinI GGWCC 1 cut(s) 361
SmlI CTYRAG 1 cut(s) 546
SmoI CTYRAG 1 cut(s) 546
Sse9I AATT 3 cut(s) 60, 194, 369
SspDI GGCGCC 2 cut(s) 97, 349
SspMI CTAG 1 cut(s) 593
SstI GAGCTC 1 cut(s) 246
StyD4I CCNGG 9 cut(s) 93, 178, 183, 248, 303, 479, 504, 517, 539
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 1 cut(s) 410
TaiI ACGT 2 cut(s) 150, 237
TaqI TCGA 3 cut(s) 221, 471, 476
TasI AATT 3 cut(s) 60, 194, 369
TauI GCSGC 7 cut(s) 56, 117, 355, 389, 452, 555, 558
TfiI GAWTC 2 cut(s) 164, 175
Tru1I TTAA 1 cut(s) 651
Tru9I TTAA 1 cut(s) 651
TseFI GTSAC 1 cut(s) 704
TseI GCWGC 2 cut(s) 319, 484
Tsp45I GTSAC 1 cut(s) 704
TspDTI ATGAA 5 cut(s) 196, 272, 359, 381, 473
TspGWI ACGGA 2 cut(s) 618, 669
Van91I CCANNNNNTGG 1 cut(s) 573
VpaK11BI GGWCC 1 cut(s) 361
XapI RAATTY 1 cut(s) 369
XceI RCATGY 1 cut(s) 649
XmiI GTMKAC 1 cut(s) 629
XspI CTAG 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.