Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001703

Physical Location & Seq

Genomic Coordinates Forward (+)

12305486 .. 12307330

Gene Structure 1845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G012040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGGGAAAGGCGGGGGCTGCGTCCCAAGCAAGAAGAAGGTCCCGTCCGGAGTACTCGCCGCCGCCGACGACCCCACGCGCGGCTCACGCGACGGGCCTATTCCCGCCGATTCCGCCGCCAATTCCAATGTCGTTCCCGATTCCGGCCAAAACGACGCCATTTCGGAGGCGTCGCATCCCGCGGCGACGGCGGCGGCGAAATTGAGGATATTTATCGTGTTCTACTCGATGTACGGACACGTGGAGGAGCTGGCGAGGAGGATCAAGAAGGGGGTGGACGGCGTGGAGGGAGTGGAGGGGGTGCTGTACAGGGTGCCGGAGACGCTGACGGCGGAGGTGCTGGAGGCGATGAAGGCGCCGTCCAAGGACGACGGAATTCCGGAGATTTCGGCGGCGGAGTTGGCGGCGGCGGATGGGGTGTTGTTCGGGTTTCCGACGAGGTACGGGTGCATGGCGGCGCAGATGAAGGCGTTTTTCGACTCGACCGGAGGGTTGTGGAAGGAGCAGAGCCTCGCCGGAAAGCCGGCTGGCTTTTTTGTTAGTACTGGGACTCAAGGAGGTGGCCAAGAAACCACAGCTTGGACAGCTATCACCCAGTTAGCACACCATGGAATGCTATTTGTTCCCATTGGGTATACTTTTGGAGCTGGCATGTTCAAGATGGACTCTGTACGAGGGGGTTCTCCATATGGTGCTGGTGTTTTTGCTGGCGATGGCTCAAGACGGCCAAGTGAAACAGAGTTGGGGCTTGCAGAGCATCAAGGGAAGTATATGGCTGCAGTAGTCAAGAAGCTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003955 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0010181 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044464 GO:0048037 GO:0050662 GO:0055114 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00130 ko01110 map00130 map01110

Pfam Domains

Protein Families

FMN_red

Protein Analysis

266

Amino Acids

27.53

Weight (kDa)

6.22

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavodoxin_1	PF00258	72 - 204	2.5e-13	Flavodoxin
FMN_red	PF03358	83 - 211	1.1e-12	NADPH-dependent FMN reductase
Flavodoxin_2	PF02525	107 - 188	7.7e-06	Flavodoxin-like fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36750
fragaria_vesca	FvH4_1g13950 FvH4_2g08230 FvH4_2g08230 FvH4_2g08230
malus_domestica	MD02G1152700.v1.1 MD05G1334200.v1.1 MD10G1081100.v1.1 MD10G1309100.v1.1
prunus_persica	Prupe.4G031000_v2.0.a1 Prupe.4G031000_v2.0.a1 Prupe.7G149400_v2.0.a1 Prupe.8G102400_v2.0.a1
pyrus_communis	pycom02g12050 pycom05g30590 pycom10g06420 pycom10g26050 pycom15g23270
rosa_chinensis	RchiOBHm_Chr2g0102261 RchiOBHm_Chr6g0263041 RchiOBHm_Chr6g0263101
rosa_laevigata	RLG00000014375 RLG00000014383 RLG00000017140
rosa_multiflora	Rmu_co8453355.1_g000001 Rmu_sc0002146.1_g000009 Rmu_sc0002479.1_g000004
rosa_roxburghii	Rroxscaffold_2G00140620 Rroxscaffold_7G00204680 Rroxscaffold_7G00204780
rosa_rugosa	Rorug02G0106100 Rorug02G0106100 Rorug06G0002900 Rorug06G0003500
rosa_samantha	Rh2AG154000 Rh2BG160000 Rh2CG159600 Rh2DG159600 Rh6AG122100 Rh6BG115200 Rh6BG116700 Rh6CG113900 Rh6CG115200 Rh6DG103000 Rh6DG103800
rosa_wichuraiana	Rw2G012040 Rw6G010470 Rw6G010520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	313, 355
AccB7I	CCANNNNNTGG	1 cut(s)	579
AccI	GTMKAC	1 cut(s)	635
AccII	CGCG	4 cut(s)	79, 81, 90, 182
AccIII	TCCGGA	2 cut(s)	47, 379
AclWI	GGATC	1 cut(s)	269
AcoI	YGGCCR	3 cut(s)	145, 562, 725
AcsI	RAATTY	1 cut(s)	375
AcvI	CACGTG	1 cut(s)	241
AcyI	GRCGYC	3 cut(s)	156, 170, 356
AfaI	GTAC	6 cut(s)	54, 233, 308, 443, 544, 672
AfiI	CCNNNNNNNGG	3 cut(s)	80, 143, 579
AflIII	ACRYGT	1 cut(s)	238
AgsI	TTSAA	1 cut(s)	658
AluBI	AGCT	5 cut(s)	250, 578, 587, 647, 793
AluI	AGCT	5 cut(s)	250, 578, 587, 647, 793
Alw26I	GTCTC	1 cut(s)	314
AlwI	GGATC	1 cut(s)	269
Aor13HI	TCCGGA	2 cut(s)	47, 379
AoxI	GGCC	4 cut(s)	95, 145, 562, 725
ApeKI	GCWGC	2 cut(s)	18, 776
ApoI	RAATTY	1 cut(s)	375
AspLEI	GCGC	3 cut(s)	81, 358, 460
AspS9I	GGNCC	2 cut(s)	40, 95
AsuHPI	GGTGA	1 cut(s)	583
AvaII	GGWCC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	564
BanI	GGYRCC	2 cut(s)	313, 355
BbrPI	CACGTG	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	5, 763
BccI	CCATC	3 cut(s)	407, 655, 707
BceAI	ACGGC	5 cut(s)	204, 295, 343, 345, 740
BcoDI	GTCTC	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	777
BfoI	RGCGCY	1 cut(s)	359
BmcAI	AGTACT	2 cut(s)	54, 544
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	40, 95
BmiI	GGNNCC	3 cut(s)	42, 315, 357
BmrI	ACTGGG	2 cut(s)	555, 589
BmsI	GCATC	2 cut(s)	184, 766
BmuI	ACTGGG	2 cut(s)	555, 589
BpmI	CTGGAG	1 cut(s)	362
BpuEI	CTTGAG	2 cut(s)	537, 703
BsaAI	YACGTR	1 cut(s)	241
BsaBI	GATNNNNATC	1 cut(s)	212
BsaHI	GRCGYC	3 cut(s)	156, 170, 356
BsaJI	CCNNGG	3 cut(s)	180, 363, 607
BsaWI	WCCGGW	3 cut(s)	47, 379, 485
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 143, 579
Bse118I	RCCGGY	1 cut(s)	523
Bse1I	ACTGG	2 cut(s)	550, 595
Bse8I	GATNNNNATC	1 cut(s)	212
BseAI	TCCGGA	2 cut(s)	47, 379
BseDI	CCNNGG	3 cut(s)	180, 363, 607
BseGI	GGATG	2 cut(s)	175, 418
BseJI	GATNNNNATC	1 cut(s)	212
BseLI	CCNNNNNNNGG	3 cut(s)	80, 143, 579
BseNI	ACTGG	2 cut(s)	550, 595
BseRI	GAGGAG	2 cut(s)	260, 271
BseXI	GCAGC	2 cut(s)	5, 763
Bsh1236I	CGCG	4 cut(s)	79, 81, 90, 182
Bsh1285I	CGRYCG	1 cut(s)	486
BshFI	GGCC	4 cut(s)	97, 147, 564, 727
BshNI	GGYRCC	2 cut(s)	313, 355
BsiEI	CGRYCG	1 cut(s)	486
BsiSI	CCGG	7 cut(s)	48, 144, 317, 380, 486, 516, 524
BslFI	GGGAC	3 cut(s)	8, 26, 562
BslI	CCNNNNNNNGG	3 cut(s)	80, 143, 579
BsmAI	GTCTC	1 cut(s)	314
BsmBI	CGTCTC	1 cut(s)	314
BsmFI	GGGAC	3 cut(s)	8, 26, 562
BsmI	GAATGC	1 cut(s)	618
BsnI	GGCC	4 cut(s)	97, 147, 564, 727
Bsp13I	TCCGGA	2 cut(s)	47, 379
Bsp1407I	TGTACA	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	261
Bsp19I	CCATGG	1 cut(s)	607
BspANI	GGCC	4 cut(s)	97, 147, 564, 727
BspEI	TCCGGA	2 cut(s)	47, 379
BspFNI	CGCG	4 cut(s)	79, 81, 90, 182
BspLI	GGNNCC	3 cut(s)	42, 315, 357
BspMAI	CTGCAG	1 cut(s)	781
BspPI	GGATC	1 cut(s)	269
BspT107I	GGYRCC	2 cut(s)	313, 355
BsrFI	RCCGGY	1 cut(s)	523
BsrGI	TGTACA	1 cut(s)	306
BsrI	ACTGG	2 cut(s)	550, 595
BssAI	RCCGGY	1 cut(s)	523
BssECI	CCNNGG	3 cut(s)	180, 363, 607
BssMI	GATC	1 cut(s)	261
BssNAI	GTATAC	1 cut(s)	636
BssNI	GRCGYC	3 cut(s)	156, 170, 356
BssT1I	CCWWGG	2 cut(s)	363, 607
Bst1107I	GTATAC	1 cut(s)	636
BstACI	GRCGYC	3 cut(s)	156, 170, 356
BstAUI	TGTACA	1 cut(s)	306
BstBAI	YACGTR	1 cut(s)	241
BstC8I	GCNNGC	7 cut(s)	252, 525, 529, 649, 709, 750, 795
BstDSI	CCRYGG	2 cut(s)	180, 607
BstF5I	GGATG	2 cut(s)	175, 418
BstFNI	CGCG	4 cut(s)	79, 81, 90, 182
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	3 cut(s)	81, 358, 460
BstKTI	GATC	1 cut(s)	264
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	1 cut(s)	261
BstMCI	CGRYCG	1 cut(s)	486
BstNSI	RCATGY	1 cut(s)	655
BstSFI	CTRYAG	1 cut(s)	777
BstUI	CGCG	4 cut(s)	79, 81, 90, 182
BstV1I	GCAGC	2 cut(s)	5, 763
BstZ17I	GTATAC	1 cut(s)	636
BsuRI	GGCC	4 cut(s)	97, 147, 564, 727
BtgI	CCRYGG	2 cut(s)	180, 607
BtgZI	GCGATG	2 cut(s)	362, 726
BtsCI	GGATG	2 cut(s)	175, 418
Cac8I	GCNNGC	7 cut(s)	252, 525, 529, 649, 709, 750, 795
CfoI	GCGC	3 cut(s)	81, 358, 460
Cfr10I	RCCGGY	1 cut(s)	523
Cfr13I	GGNCC	2 cut(s)	40, 95
Cfr42I	CCGCGG	1 cut(s)	183
CseI	GACGC	4 cut(s)	10, 159, 164, 331
Csp6I	GTAC	6 cut(s)	53, 232, 307, 442, 543, 671
CviAII	CATG	3 cut(s)	451, 608, 652
CviQI	GTAC	6 cut(s)	53, 232, 307, 442, 543, 671
DinI	GGCGCC	1 cut(s)	357
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
EaeI	YGGCCR	3 cut(s)	145, 562, 725
EciI	GGCGGA	4 cut(s)	103, 347, 410, 425
Eco130I	CCWWGG	2 cut(s)	363, 607
Eco47I	GGWCC	1 cut(s)	40
Eco72I	CACGTG	1 cut(s)	241
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	375
EcoT14I	CCWWGG	2 cut(s)	363, 607
EgeI	GGCGCC	1 cut(s)	357
EheI	GGCGCC	1 cut(s)	357
ErhI	CCWWGG	2 cut(s)	363, 607
Esp3I	CGTCTC	1 cut(s)	314
FaeI	CATG	3 cut(s)	454, 611, 655
FaiI	YATR	8 cut(s)	452, 609, 636, 653, 688, 690, 771, 773
FaqI	GGGAC	3 cut(s)	8, 26, 562
FatI	CATG	3 cut(s)	450, 607, 651
FauI	CCCGC	3 cut(s)	5, 112, 187
FauNDI	CATATG	1 cut(s)	688
FblI	GTMKAC	1 cut(s)	635
FokI	GGATG	2 cut(s)	162, 425
GlaI	GCGC	3 cut(s)	80, 357, 459
GsuI	CTGGAG	1 cut(s)	362
HaeII	RGCGCY	1 cut(s)	359
HaeIII	GGCC	4 cut(s)	97, 147, 564, 727
HapII	CCGG	7 cut(s)	48, 144, 317, 380, 486, 516, 524
HgaI	GACGC	4 cut(s)	10, 159, 164, 331
HhaI	GCGC	3 cut(s)	81, 358, 460
Hin1I	GRCGYC	3 cut(s)	156, 170, 356
Hin1II	CATG	3 cut(s)	454, 611, 655
Hin6I	GCGC	3 cut(s)	79, 356, 458
HinP1I	GCGC	3 cut(s)	79, 356, 458
HindIII	AAGCTT	1 cut(s)	791
HinfI	GANTC	5 cut(s)	110, 140, 479, 550, 665
HpaII	CCGG	7 cut(s)	48, 144, 317, 380, 486, 516, 524
HphI	GGTGA	1 cut(s)	583
Hpy166II	GTNNAC	2 cut(s)	277, 636
Hpy188I	TCNGA	2 cut(s)	166, 435
Hpy188III	TCNNGA	7 cut(s)	48, 137, 265, 380, 658, 720, 787
Hpy8I	GTNNAC	2 cut(s)	277, 636
Hpy99I	CGWCG	7 cut(s)	71, 95, 158, 175, 190, 374, 439
HpyAV	CCTTC	5 cut(s)	31, 262, 346, 460, 493
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	3 cut(s)	450, 752, 779
HpySE526I	ACGT	1 cut(s)	240
Hsp92I	GRCGYC	3 cut(s)	156, 170, 356
Hsp92II	CATG	3 cut(s)	454, 611, 655
HspAI	GCGC	3 cut(s)	79, 356, 458
KasI	GGCGCC	1 cut(s)	355
Kpn2I	TCCGGA	2 cut(s)	47, 379
KroI	GCCGGC	1 cut(s)	523
KroNI	GCCGGC	1 cut(s)	525
KspI	CCGCGG	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	261
LmnI	GCTCC	3 cut(s)	247, 502, 644
Lsp1109I	GCAGC	2 cut(s)	5, 763
LweI	GCATC	2 cut(s)	184, 766
MaeII	ACGT	1 cut(s)	240
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	1 cut(s)	46
MlsI	TGGCCA	1 cut(s)	564
MluCI	AATT	3 cut(s)	121, 200, 375
MluNI	TGGCCA	1 cut(s)	564
Mly113I	GGCGCC	1 cut(s)	356
MlyI	GAGTC	3 cut(s)	473, 544, 659
MmeI	TCCRAC	1 cut(s)	458
Mox20I	TGGCCA	1 cut(s)	564
MroI	TCCGGA	2 cut(s)	47, 379
MroNI	GCCGGC	1 cut(s)	523
MscI	TGGCCA	1 cut(s)	564
Msp20I	TGGCCA	1 cut(s)	564
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	7 cut(s)	48, 144, 317, 380, 486, 516, 524
Mva1269I	GAATGC	1 cut(s)	618
MvnI	CGCG	4 cut(s)	79, 81, 90, 182
NaeI	GCCGGC	1 cut(s)	525
NarI	GGCGCC	1 cut(s)	356
NcoI	CCATGG	1 cut(s)	607
NdeI	CATATG	1 cut(s)	688
NdeII	GATC	1 cut(s)	261
NgoMIV	GCCGGC	1 cut(s)	523
NlaIII	CATG	3 cut(s)	454, 611, 655
NlaIV	GGNNCC	3 cut(s)	42, 315, 357
NspI	RCATGY	1 cut(s)	655
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 194
PctI	GAATGC	1 cut(s)	618
PdiI	GCCGGC	1 cut(s)	525
PfeI	GAWTC	2 cut(s)	110, 140
PflMI	CCANNNNNTGG	1 cut(s)	579
PleI	GAGTC	3 cut(s)	473, 544, 659
PluTI	GGCGCC	1 cut(s)	359
PmaCI	CACGTG	1 cut(s)	241
PmlI	CACGTG	1 cut(s)	241
PpsI	GAGTC	3 cut(s)	473, 544, 659
Ppu21I	YACGTR	1 cut(s)	241
PpuMI	RGGWCCY	1 cut(s)	40
Psp5II	RGGWCCY	1 cut(s)	40
PspCI	CACGTG	1 cut(s)	241
PspN4I	GGNNCC	3 cut(s)	42, 315, 357
PspPI	GGNCC	2 cut(s)	40, 95
PspPPI	RGGWCCY	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	781
RsaI	GTAC	6 cut(s)	54, 233, 308, 443, 544, 672
RsaNI	GTAC	6 cut(s)	53, 232, 307, 442, 543, 671
SacII	CCGCGG	1 cut(s)	183
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	2 cut(s)	40, 95
ScaI	AGTACT	2 cut(s)	54, 544
SchI	GAGTC	3 cut(s)	473, 544, 659
SfaNI	GCATC	2 cut(s)	184, 766
SfcI	CTRYAG	1 cut(s)	777
SfoI	GGCGCC	1 cut(s)	357
Sfr303I	CCGCGG	1 cut(s)	183
SgrBI	CCGCGG	1 cut(s)	183
SinI	GGWCC	1 cut(s)	40
SmlI	CTYRAG	2 cut(s)	552, 718
SmoI	CTYRAG	2 cut(s)	552, 718
Sse9I	AATT	3 cut(s)	121, 200, 375
SspDI	GGCGCC	1 cut(s)	355
StyI	CCWWGG	2 cut(s)	363, 607
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	3 cut(s)	227, 477, 482
TasI	AATT	3 cut(s)	121, 200, 375
TatI	WGTACW	3 cut(s)	52, 306, 542
TfiI	GAWTC	2 cut(s)	110, 140
TseI	GCWGC	2 cut(s)	18, 776
TspDTI	ATGAA	2 cut(s)	365, 479
TspGWI	ACGGA	2 cut(s)	249, 387
Van91I	CCANNNNNTGG	1 cut(s)	579
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	1 cut(s)	375
XceI	RCATGY	1 cut(s)	655
XmiI	GTMKAC	1 cut(s)	635
ZrmI	AGTACT	2 cut(s)	54, 544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.