Rmu_sc0005271.1_g000001

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005271.1
OG0019703
Physical Location & Seq
Reverse (-)
1902 .. 2770
869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005271.1_g000001.1.cds

Sequence Viewer

Length: 753 bp
atgagtcgctcctgcatagttcattcttcggcttgtgatgatgaggatgacgagaaacccagctggaagcatacttctacactgaagaaattatacgattgggagacacagctctatcatgagataaagaaactcgagaatgatggaggaggaaatgttgccaaaaaatgtgtgctatcaactatcaaacaagttcaaaaactgagagatgaagagctgcagcagaaaatagttgagctgctaaatgccataatgagagattggaaggtgatgtcaggatgtcatagaatcctaaaggacatcatgtccaaagcagaaaaatcttcctattctcctcctccttatggattaatggcctacgttaaaactcttgatgattggatcagccactcgttcccatcgttttgtgaagatgacaatgacaaccacaacgataggccatcgttgcttgcaaagtggtcagatggtttggaggatctgcctgagaaggaagtgactcatgtcatgagaagctttcagaaaaaagttggaacactggagcttctactaaagaaggaaaaggaacaaaagaggaggttgagaaacttaagagcaggattaagaggaaggttgagaactttgaggagaagggtttacgcaggatggggacgcgagatgtcaccgcagatgctgtttgtactggatttttatcagtctttgaatccttggctaggttttcaacgacttattgtaaaagaatacgctgatcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

29.33

Weight (kDa)

8.94

Isoelectric Point (pI)

60.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019703)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g36511
rosa_multiflora Rmu_sc0005271.1_g000001
rosa_roxburghii Rroxscaffold_5G00357090 Rroxscaffold_5G00386680
rosa_samantha Rh4BG440700 Rh4CG458000 Rh4DG439200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 651
AciI CCGC 1 cut(s) 662
AclWI GGATC 2 cut(s) 389, 483
AcuI CTGAAG 1 cut(s) 104
AfaI GTAC 1 cut(s) 678
AfiI CCNNNNNNNGG 2 cut(s) 344, 710
AflII CTTAAG 1 cut(s) 586
AgsI TTSAA 3 cut(s) 197, 700, 719
AhdI GACNNNNNGTC 1 cut(s) 304
AluBI AGCT 6 cut(s) 63, 112, 217, 238, 513, 541
AluI AGCT 6 cut(s) 63, 112, 217, 238, 513, 541
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 2 cut(s) 389, 483
AlwNI CAGNNNCTG 1 cut(s) 670
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 2 cut(s) 354, 437
ApeKI GCWGC 3 cut(s) 217, 220, 238
AseI ATTAAT 1 cut(s) 350
AsuHPI GGTGA 2 cut(s) 280, 651
AvaI CYCGRG 1 cut(s) 134
BarI GAAGNNNNNNTAC 2 cut(s) 77, 109
BbvI GCAGC 3 cut(s) 204, 225, 232
BccI CCATC 5 cut(s) 137, 406, 448, 458, 636
BclI TGATCA 1 cut(s) 745
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 1 cut(s) 710
BfmI CTRYAG 1 cut(s) 218
BfrI CTTAAG 1 cut(s) 586
BisI GCNGC 3 cut(s) 218, 221, 239
BlsI GCNGC 3 cut(s) 219, 222, 240
BmeRI GACNNNNNGTC 1 cut(s) 304
BmeT110I CYCGRG 1 cut(s) 134
BmsI GCATC 1 cut(s) 657
BoxI GACNNNNGTC 1 cut(s) 500
BpmI CTGGAG 1 cut(s) 557
BsaBI GATNNNNATC 1 cut(s) 687
BsaJI CCNNGG 1 cut(s) 704
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bsc4I CCNNNNNNNGG 2 cut(s) 344, 710
Bse1I ACTGG 2 cut(s) 540, 684
Bse8I GATNNNNATC 1 cut(s) 687
BseDI CCNNGG 1 cut(s) 704
BseGI GGATG 3 cut(s) 52, 284, 647
BseJI GATNNNNATC 1 cut(s) 687
BseLI CCNNNNNNNGG 2 cut(s) 344, 710
BseMII CTCAG 2 cut(s) 194, 474
BseNI ACTGG 2 cut(s) 540, 684
BseRI GAGGAG 5 cut(s) 162, 324, 327, 586, 637
BseXI GCAGC 3 cut(s) 204, 225, 232
BseYI CCCAGC 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 651
BshFI GGCC 2 cut(s) 356, 439
BsiHKCI CYCGRG 1 cut(s) 134
BslFI GGGAC 1 cut(s) 660
BslI CCNNNNNNNGG 2 cut(s) 344, 710
BsmAI GTCTC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 660
BsnI GGCC 2 cut(s) 356, 439
BsoBI CYCGRG 1 cut(s) 134
Bsp143I GATC 3 cut(s) 381, 475, 745
BspACI CCGC 1 cut(s) 662
BspANI GGCC 2 cut(s) 356, 439
BspCNI CTCAG 2 cut(s) 195, 475
BspFNI CGCG 1 cut(s) 651
BspHI TCATGA 2 cut(s) 118, 504
BspMAI CTGCAG 1 cut(s) 222
BspPI GGATC 2 cut(s) 389, 483
BspQI GCTCTTC 1 cut(s) 207
BspTI CTTAAG 1 cut(s) 586
BsrI ACTGG 2 cut(s) 540, 684
BssECI CCNNGG 1 cut(s) 704
BssMI GATC 3 cut(s) 381, 475, 745
BssT1I CCWWGG 1 cut(s) 704
Bst6I CTCTTC 1 cut(s) 207
BstAFI CTTAAG 1 cut(s) 586
BstC8I GCNNGC 1 cut(s) 450
BstDEI CTNAG 2 cut(s) 203, 483
BstENI CCTNNNNNAGG 1 cut(s) 708
BstF5I GGATG 3 cut(s) 52, 284, 647
BstFNI CGCG 1 cut(s) 651
BstKTI GATC 3 cut(s) 384, 478, 748
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 3 cut(s) 381, 475, 745
BstMWI GCNNNNNNNGC 1 cut(s) 445
BstPAI GACNNNNGTC 1 cut(s) 500
BstSFI CTRYAG 1 cut(s) 218
BstUI CGCG 1 cut(s) 651
BstV1I GCAGC 3 cut(s) 204, 225, 232
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
BsuRI GGCC 2 cut(s) 356, 439
BtsCI GGATG 3 cut(s) 52, 284, 647
BtsIMutI CAGTG 2 cut(s) 80, 533
Cac8I GCNNGC 1 cut(s) 450
CaiI CAGNNNCTG 1 cut(s) 670
CciI TCATGA 2 cut(s) 118, 504
CseI GACGC 1 cut(s) 657
Csp6I GTAC 1 cut(s) 677
CviAII CATG 4 cut(s) 119, 304, 500, 505
CviQI GTAC 1 cut(s) 677
DdeI CTNAG 2 cut(s) 203, 483
DpnI GATC 3 cut(s) 383, 477, 747
DpnII GATC 3 cut(s) 381, 475, 745
DriI GACNNNNNGTC 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 207
Eam1105I GACNNNNNGTC 1 cut(s) 304
EarI CTCTTC 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 704
Eco57I CTGAAG 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 134
EcoNI CCTNNNNNAGG 1 cut(s) 708
EcoT14I CCWWGG 1 cut(s) 704
ErhI CCWWGG 1 cut(s) 704
FaeI CATG 4 cut(s) 122, 307, 503, 508
FaqI GGGAC 1 cut(s) 660
FatI CATG 4 cut(s) 118, 303, 499, 504
FbaI TGATCA 1 cut(s) 745
Fnu4HI GCNGC 3 cut(s) 218, 221, 239
FokI GGATG 3 cut(s) 59, 291, 654
Fsp4HI GCNGC 3 cut(s) 218, 221, 239
FspBI CTAG 1 cut(s) 710
GluI GCNGC 3 cut(s) 218, 221, 239
GsaI CCCAGC 1 cut(s) 63
GsuI CTGGAG 1 cut(s) 557
HaeIII GGCC 2 cut(s) 356, 439
HgaI GACGC 1 cut(s) 657
Hin1II CATG 4 cut(s) 122, 307, 503, 508
HindIII AAGCTT 1 cut(s) 511
HinfI GANTC 4 cut(s) 4, 288, 496, 700
HphI GGTGA 2 cut(s) 280, 651
Hpy166II GTNNAC 1 cut(s) 634
Hpy188I TCNGA 2 cut(s) 463, 519
Hpy188III TCNNGA 5 cut(s) 119, 136, 276, 371, 505
Hpy8I GTNNAC 1 cut(s) 634
HpyAV CCTTC 5 cut(s) 259, 481, 547, 600, 621
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 3 cut(s) 15, 220, 452
HpyF10VI GCNNNNNNNGC 1 cut(s) 445
HpyF3I CTNAG 2 cut(s) 203, 483
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 4 cut(s) 122, 307, 503, 508
Ksp22I TGATCA 1 cut(s) 745
Kzo9I GATC 3 cut(s) 381, 475, 745
LguI GCTCTTC 1 cut(s) 207
LmnI GCTCC 2 cut(s) 14, 538
LpnPI CCDG 9 cut(s) 25, 49, 73, 261, 495, 521, 579, 624, 665
Lsp1109I GCAGC 3 cut(s) 204, 225, 232
LweI GCATC 1 cut(s) 657
MaeI CTAG 1 cut(s) 710
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 2 cut(s) 493, 657
MalI GATC 3 cut(s) 383, 477, 747
MboI GATC 3 cut(s) 381, 475, 745
MboII GAAGA 5 cut(s) 18, 97, 224, 315, 422
MflI RGATCY 1 cut(s) 475
MluCI AATT 1 cut(s) 89
MlyI GAGTC 2 cut(s) 13, 490
MmeI TCCRAC 1 cut(s) 508
MseI TTAA 4 cut(s) 350, 363, 587, 599
MspA1I CMGCKG 1 cut(s) 63
MspCI CTTAAG 1 cut(s) 586
MvnI CGCG 1 cut(s) 651
MwoI GCNNNNNNNGC 1 cut(s) 445
NdeII GATC 3 cut(s) 381, 475, 745
NlaIII CATG 4 cut(s) 122, 307, 503, 508
NmuCI GTSAC 2 cut(s) 493, 657
PaeR7I CTCGAG 1 cut(s) 134
PagI TCATGA 2 cut(s) 118, 504
PciSI GCTCTTC 1 cut(s) 207
PcsI WCGNNNNNNNCGW 1 cut(s) 398
PfeI GAWTC 2 cut(s) 288, 700
PkrI GCNGC 3 cut(s) 219, 222, 240
PleI GAGTC 2 cut(s) 12, 490
PpsI GAGTC 2 cut(s) 12, 490
PshAI GACNNNNGTC 1 cut(s) 500
PshBI ATTAAT 1 cut(s) 350
PspFI CCCAGC 1 cut(s) 59
PstI CTGCAG 1 cut(s) 222
PstNI CAGNNNCTG 1 cut(s) 670
PsuI RGATCY 1 cut(s) 475
PvuII CAGCTG 1 cut(s) 63
RsaI GTAC 1 cut(s) 678
RsaNI GTAC 1 cut(s) 677
SapI GCTCTTC 1 cut(s) 207
SaqAI TTAA 4 cut(s) 350, 363, 587, 599
SatI GCNGC 3 cut(s) 218, 221, 239
Sau3AI GATC 3 cut(s) 381, 475, 745
SchI GAGTC 2 cut(s) 13, 490
SfaNI GCATC 1 cut(s) 657
SfcI CTRYAG 1 cut(s) 218
Sfr274I CTCGAG 1 cut(s) 134
SlaI CTCGAG 1 cut(s) 134
SmlI CTYRAG 2 cut(s) 134, 586
SmoI CTYRAG 2 cut(s) 134, 586
Sse9I AATT 1 cut(s) 89
SsiI CCGC 1 cut(s) 662
SspMI CTAG 1 cut(s) 710
StyI CCWWGG 1 cut(s) 704
TaiI ACGT 1 cut(s) 363
TaqI TCGA 1 cut(s) 135
TasI AATT 1 cut(s) 89
TatI WGTACW 1 cut(s) 676
TfiI GAWTC 2 cut(s) 288, 700
Tru1I TTAA 4 cut(s) 350, 363, 587, 599
Tru9I TTAA 4 cut(s) 350, 363, 587, 599
TscAI CASTG 2 cut(s) 87, 540
TseFI GTSAC 2 cut(s) 493, 657
TseI GCWGC 3 cut(s) 217, 220, 238
Tsp45I GTSAC 2 cut(s) 493, 657
TspDTI ATGAA 2 cut(s) 11, 225
TspRI CASTG 2 cut(s) 87, 540
Vha464I CTTAAG 1 cut(s) 586
VspI ATTAAT 1 cut(s) 350
XagI CCTNNNNNAGG 1 cut(s) 708
XhoI CTCGAG 1 cut(s) 134
XspI CTAG 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.