Rroxscaffold_5G00386680

Protein of unknown function (DUF632)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
65500286 .. 65500907
622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00386680.1

Sequence Viewer

Length: 429 bp
ATGAGTCACTCCTCGCATAGTTCGTTCTTCACTTGTGTTGATGAGGATGAGGAGAAACCCAGGAAGTATACTTCTACACCGAAGAAATTATATAATTGGGAGACACAGCTCTATCATGAGATAAAGAAACTCAAGAATGATGGAGGAGGAAAGGTTGCCAAAAAATGTGTGGTATCAACTATCAAACAAGTTCAAAAACCGAGAGATGAAGAGCTGCAGCAGCAAATAGGAGCTGCTAAATGCCATAATGAGAGATTGGAAGCTCTTGATGATTGGATCAGCCACTCGTTCCCATCATTTTGTGAAGATGACAATGACGACCACAACGATAAGATATCCTTGCTTGCAAAGAGGTCGGATGGTTTGGAGGAGCCGCCCGAGAAGGAAGTGACTCATCATAAGAAGCTTTCGAAAAAAGTTGGAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.34

Weight (kDa)

6.44

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019703)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 68
AciI CCGC 1 cut(s) 374
AclWI GGATC 1 cut(s) 284
AgsI TTSAA 1 cut(s) 194
AjnI CCWGG 1 cut(s) 59
AluBI AGCT 5 cut(s) 109, 214, 233, 263, 406
AluI AGCT 5 cut(s) 109, 214, 233, 263, 406
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 284
Ama87I CYCGRG 1 cut(s) 377
ApeKI GCWGC 4 cut(s) 214, 217, 220, 233
AsuII TTCGAA 1 cut(s) 410
AvaI CYCGRG 1 cut(s) 377
BbvI GCAGC 4 cut(s) 201, 220, 229, 232
BccI CCATC 3 cut(s) 134, 301, 353
BcgI CGANNNNNNTGC 2 cut(s) 336, 370
BciT130I CCWGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 95
BfmI CTRYAG 1 cut(s) 215
BisI GCNGC 5 cut(s) 215, 218, 221, 234, 374
BlsI GCNGC 5 cut(s) 216, 219, 222, 235, 375
Bme1390I CCNGG 1 cut(s) 61
BmeT110I CYCGRG 1 cut(s) 377
BmiI GGNNCC 1 cut(s) 372
BmrFI CCNGG 1 cut(s) 61
Bpu14I TTCGAA 1 cut(s) 410
BpuEI CTTGAG 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 59
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
BseBI CCWGG 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 2 cut(s) 52, 364
BseRI GAGGAG 3 cut(s) 65, 159, 383
BseXI GCAGC 4 cut(s) 201, 220, 229, 232
BsiHKCI CYCGRG 1 cut(s) 377
BsmAI GTCTC 1 cut(s) 95
BsoBI CYCGRG 1 cut(s) 377
Bsp119I TTCGAA 1 cut(s) 410
Bsp143I GATC 1 cut(s) 276
BspACI CCGC 1 cut(s) 374
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 372
BspMAI CTGCAG 1 cut(s) 219
BspPI GGATC 1 cut(s) 284
BspQI GCTCTTC 1 cut(s) 204
BspT104I TTCGAA 1 cut(s) 410
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 1 cut(s) 276
BssNAI GTATAC 1 cut(s) 69
Bst1107I GTATAC 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 204
BstBI TTCGAA 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 345
BstF5I GGATG 2 cut(s) 52, 364
BstKTI GATC 1 cut(s) 279
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 1 cut(s) 276
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstNI CCWGG 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 215
BstV1I GCAGC 4 cut(s) 201, 220, 229, 232
BstZ17I GTATAC 1 cut(s) 69
BtsCI GGATG 2 cut(s) 52, 364
Cac8I GCNNGC 1 cut(s) 345
CciI TCATGA 1 cut(s) 115
CviAII CATG 1 cut(s) 116
CviJI RGCY 7 cut(s) 109, 214, 233, 263, 282, 373, 406
CviKI_1 RGCY 7 cut(s) 109, 214, 233, 263, 282, 373, 406
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco32I GATATC 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 59
EcoRV GATATC 1 cut(s) 336
FaeI CATG 1 cut(s) 119
FaiI YATR 8 cut(s) 18, 69, 91, 93, 117, 246, 399, 427
FalI AAGNNNNNCTT 2 cut(s) 323, 355
FatI CATG 1 cut(s) 115
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 5 cut(s) 215, 218, 221, 234, 374
FokI GGATG 2 cut(s) 59, 371
Fsp4HI GCNGC 5 cut(s) 215, 218, 221, 234, 374
GluI GCNGC 5 cut(s) 215, 218, 221, 234, 374
Hin1II CATG 1 cut(s) 119
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 2 cut(s) 4, 391
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 1 cut(s) 358
Hpy188III TCNNGA 3 cut(s) 116, 133, 266
Hpy8I GTNNAC 1 cut(s) 69
HpyAV CCTTC 1 cut(s) 376
HpyCH4V TGCA 2 cut(s) 217, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
Hsp92II CATG 1 cut(s) 119
Kzo9I GATC 1 cut(s) 276
LguI GCTCTTC 1 cut(s) 204
LmnI GCTCC 2 cut(s) 230, 370
LpnPI CCDG 2 cut(s) 46, 73
Lsp1109I GCAGC 4 cut(s) 201, 220, 229, 232
MaeIII GTNAC 2 cut(s) 5, 388
MalI GATC 1 cut(s) 278
MboI GATC 1 cut(s) 276
MboII GAAGA 4 cut(s) 19, 94, 221, 317
MluCI AATT 2 cut(s) 86, 94
MlyI GAGTC 2 cut(s) 13, 385
MmeI TCCRAC 2 cut(s) 336, 400
MnlI CCTC 7 cut(s) 22, 37, 43, 137, 140, 345, 361
MspR9I CCNGG 1 cut(s) 61
MvaI CCWGG 1 cut(s) 61
MwoI GCNNNNNNNGC 1 cut(s) 220
NdeII GATC 1 cut(s) 276
NlaIII CATG 1 cut(s) 119
NlaIV GGNNCC 1 cut(s) 372
NmuCI GTSAC 2 cut(s) 5, 388
NspV TTCGAA 1 cut(s) 410
PagI TCATGA 1 cut(s) 115
PciSI GCTCTTC 1 cut(s) 204
PcsI WCGNNNNNNNCGW 2 cut(s) 20, 324
PkrI GCNGC 5 cut(s) 216, 219, 222, 235, 375
PleI GAGTC 2 cut(s) 12, 385
PpsI GAGTC 2 cut(s) 12, 385
Psp6I CCWGG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 372
PstI CTGCAG 1 cut(s) 219
SapI GCTCTTC 1 cut(s) 204
SatI GCNGC 5 cut(s) 215, 218, 221, 234, 374
Sau3AI GATC 1 cut(s) 276
SchI GAGTC 2 cut(s) 13, 385
ScrFI CCNGG 1 cut(s) 61
SetI ASST 7 cut(s) 111, 156, 216, 235, 265, 356, 408
SfcI CTRYAG 1 cut(s) 215
SfuI TTCGAA 1 cut(s) 410
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 2 cut(s) 86, 94
SsiI CCGC 1 cut(s) 374
StyD4I CCNGG 1 cut(s) 59
TaqI TCGA 1 cut(s) 410
TasI AATT 2 cut(s) 86, 94
TauI GCSGC 1 cut(s) 376
TseFI GTSAC 2 cut(s) 5, 388
TseI GCWGC 4 cut(s) 214, 217, 220, 233
Tsp45I GTSAC 2 cut(s) 5, 388
TspDTI ATGAA 1 cut(s) 222
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.