Rh4DG439200

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0019703
Physical Location & Seq
Reverse (-)
64166979 .. 64167209
231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG439200.1

Sequence Viewer

Length: 231 bp
ATGAAAGTTAAGGCTCAATTCCAAAAGGCTTACGAGTCTGGCAACAATGTTTCAAAACTGCTAAAGGCCGAAGATGTTCGAAGGCAAAGTACTGCTGAAAGAAATTTTTTTAGGCTATGCCGGTCACTCACGATGAGTCGCTCTTGCATAGTTCGTTCTTCGGCTTATGATGATGAGGATGAGGAGAAACCCAGGAAGCATACTTTTACACTGAATAAATTATACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.97

Weight (kDa)

9.47

Isoelectric Point (pI)

68.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF632 PF04782 2 - 75 1.7e-07 Protein of unknown function (DUF632)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019703)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g36511
rosa_multiflora Rmu_sc0005271.1_g000001
rosa_roxburghii Rroxscaffold_5G00357090 Rroxscaffold_5G00386680
rosa_samantha Rh4BG440700 Rh4CG458000 Rh4DG439200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 103
AfaI GTAC 1 cut(s) 91
AgsI TTSAA 1 cut(s) 54
AjnI CCWGG 1 cut(s) 191
AoxI GGCC 1 cut(s) 66
ApoI RAATTY 1 cut(s) 103
Asp700I GAANNNNTTC 1 cut(s) 75
AsuII TTCGAA 1 cut(s) 79
BarI GAAGNNNNNNTAC 2 cut(s) 73, 105
BciT130I CCWGG 1 cut(s) 193
BmcAI AGTACT 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 193
Bpu14I TTCGAA 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 191
Bse118I RCCGGY 1 cut(s) 120
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 191
BseGI GGATG 1 cut(s) 184
BseRI GAGGAG 1 cut(s) 197
BshFI GGCC 1 cut(s) 68
BsiSI CCGG 1 cut(s) 121
BsnI GGCC 1 cut(s) 68
Bsp119I TTCGAA 1 cut(s) 79
BspANI GGCC 1 cut(s) 68
BspT104I TTCGAA 1 cut(s) 79
BsrFI RCCGGY 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 193
BstBI TTCGAA 1 cut(s) 79
BstF5I GGATG 1 cut(s) 184
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 191
BsuRI GGCC 1 cut(s) 68
BtsCI GGATG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 209
Cfr10I RCCGGY 1 cut(s) 120
Csp6I GTAC 1 cut(s) 90
CviJI RGCY 5 cut(s) 14, 29, 68, 115, 164
CviKI_1 RGCY 5 cut(s) 14, 29, 68, 115, 164
CviQI GTAC 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 191
FaiI YATR 5 cut(s) 118, 149, 168, 201, 223
FokI GGATG 1 cut(s) 191
HaeIII GGCC 1 cut(s) 68
HapII CCGG 1 cut(s) 121
HinfI GANTC 2 cut(s) 35, 136
HpaII CCGG 1 cut(s) 121
Hpy188III TCNNGA 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 147
LpnPI CCDG 4 cut(s) 24, 134, 178, 205
MaeIII GTNAC 1 cut(s) 123
MboII GAAGA 2 cut(s) 83, 150
MluCI AATT 3 cut(s) 17, 103, 218
MlyI GAGTC 2 cut(s) 44, 145
MnlI CCTC 2 cut(s) 169, 175
MroXI GAANNNNTTC 1 cut(s) 75
MseI TTAA 1 cut(s) 9
MspI CCGG 1 cut(s) 121
MspR9I CCNGG 1 cut(s) 193
MvaI CCWGG 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 123
NspV TTCGAA 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 75
PleI GAGTC 2 cut(s) 43, 144
PpsI GAGTC 2 cut(s) 43, 144
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SaqAI TTAA 1 cut(s) 9
ScaI AGTACT 1 cut(s) 91
SchI GAGTC 2 cut(s) 44, 145
ScrFI CCNGG 1 cut(s) 193
SfuI TTCGAA 1 cut(s) 79
SgeI CNNG 7 cut(s) 46, 51, 133, 142, 156, 204, 205
Sse9I AATT 3 cut(s) 17, 103, 218
StyD4I CCNGG 1 cut(s) 191
TaqI TCGA 1 cut(s) 79
TasI AATT 3 cut(s) 17, 103, 218
TatI WGTACW 1 cut(s) 89
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 123
Tsp45I GTSAC 1 cut(s) 123
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 216
XapI RAATTY 1 cut(s) 103
XmnI GAANNNNTTC 1 cut(s) 75
ZrmI AGTACT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.