Rroxscaffold_5G00357090

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0019703
Physical Location & Seq
Forward (+)
36606367 .. 36607272
906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00357090.1

Sequence Viewer

Length: 705 bp
ATGCCGGTCACTCACGATGAGCCACTCCTGCATAATTCGCTCTTCACTTGTGATGATGAGGATGAGGAGAAACCTAAGAAGCATACTTCTACACCGAAGAAATTATACGATTGGGAGACACAACTCTATCATGAGATAAAGAAACTCAAGAATGATGGAGGTGGAAAGGTTGCCAAAAAATGTGTGGTATCAACTATCAAACAAGTTCAAAAACCGAGAGATGAAGAGCTGCAGCAGCAAATAGTTGAGCCGCTAAATGCCATAATGAGAGATTGGAAGGTGATATTAGGATGTCATGGAATCCTAAAGGACATCATGTCCAAAGCAGAAAAATCTTCCTATTCTCCTCCTCCTTATGGATTAATGGCCTACGTTAAAGCTCTTGATGATTGGATCAGCCACTCGTTCCCATCATTTTGTGAAGATGACAATGACGACCATAACGATAAGCCATCCTTGCTTGCAAAGAGGTCGATGGAGGTTGAGAAACTTAAGAGCAGGATTAAGAGGAAGGTTGAGAACTTTGAGGAGAAGGACAAAGAGAAGTTGGAGAGATTGAACAAGAAGCTACACAAAAAGGAAGTCGAGTTTACTAGCAAGATGGGGAAGCGAGATGTCACCGCATATGCTGTTTATACTGGATTTTTATCAGTCTTTGAATCCTTGGCTAGGTTTTCAACGACTTATTGTAAAAGAATACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

27.27

Weight (kDa)

8.75

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF632 PF04782 57 - 113 1.2e-08 Protein of unknown function (DUF632)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019703)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g36511
rosa_multiflora Rmu_sc0005271.1_g000001
rosa_roxburghii Rroxscaffold_5G00357090 Rroxscaffold_5G00386680
rosa_samantha Rh4BG440700 Rh4CG458000 Rh4DG439200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 251, 621
AclWI GGATC 1 cut(s) 401
AfiI CCNNNNNNNGG 2 cut(s) 356, 669
AflII CTTAAG 1 cut(s) 491
AgsI TTSAA 4 cut(s) 209, 559, 659, 678
AhdI GACNNNNNGTC 1 cut(s) 316
AluBI AGCT 3 cut(s) 229, 380, 568
AluI AGCT 3 cut(s) 229, 380, 568
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 1 cut(s) 401
AoxI GGCC 1 cut(s) 366
ApeKI GCWGC 3 cut(s) 229, 232, 235
ArsI GACNNNNNNTTYG 2 cut(s) 567, 599
AseI ATTAAT 1 cut(s) 362
AsuHPI GGTGA 2 cut(s) 292, 610
BarI GAAGNNNNNNTAC 2 cut(s) 89, 121
BbvI GCAGC 3 cut(s) 216, 244, 247
BccI CCATC 5 cut(s) 149, 418, 460, 469, 595
BcgI CGANNNNNNTGC 2 cut(s) 453, 487
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 2 cut(s) 594, 669
BfmI CTRYAG 1 cut(s) 230
BfrI CTTAAG 1 cut(s) 491
BisI GCNGC 4 cut(s) 230, 233, 236, 251
BlsI GCNGC 4 cut(s) 231, 234, 237, 252
BmeRI GACNNNNNGTC 1 cut(s) 316
BpuEI CTTGAG 1 cut(s) 131
BsaBI GATNNNNATC 1 cut(s) 646
BsaJI CCNNGG 1 cut(s) 663
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 669
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 643
Bse8I GATNNNNATC 1 cut(s) 646
BseDI CCNNGG 1 cut(s) 663
BseGI GGATG 3 cut(s) 67, 296, 452
BseJI GATNNNNATC 1 cut(s) 646
BseLI CCNNNNNNNGG 2 cut(s) 356, 669
BseNI ACTGG 1 cut(s) 643
BseRI GAGGAG 4 cut(s) 80, 336, 339, 542
BseXI GCAGC 3 cut(s) 216, 244, 247
BshFI GGCC 1 cut(s) 368
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 2 cut(s) 356, 669
BsmAI GTCTC 1 cut(s) 110
BsnI GGCC 1 cut(s) 368
Bsp143I GATC 1 cut(s) 393
BspACI CCGC 2 cut(s) 251, 621
BspANI GGCC 1 cut(s) 368
BspHI TCATGA 1 cut(s) 130
BspMAI CTGCAG 1 cut(s) 234
BspPI GGATC 1 cut(s) 401
BspQI GCTCTTC 2 cut(s) 47, 219
BspTI CTTAAG 1 cut(s) 491
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 643
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 663
BssMI GATC 1 cut(s) 393
BssT1I CCWWGG 1 cut(s) 663
Bst6I CTCTTC 2 cut(s) 47, 219
BstAFI CTTAAG 1 cut(s) 491
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 1 cut(s) 75
BstENI CCTNNNNNAGG 1 cut(s) 667
BstF5I GGATG 3 cut(s) 67, 296, 452
BstKTI GATC 1 cut(s) 396
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 1 cut(s) 393
BstMWI GCNNNNNNNGC 4 cut(s) 28, 37, 235, 457
BstSFI CTRYAG 1 cut(s) 230
BstV1I GCAGC 3 cut(s) 216, 244, 247
BsuRI GGCC 1 cut(s) 368
BtsCI GGATG 3 cut(s) 67, 296, 452
Cac8I GCNNGC 1 cut(s) 462
CciI TCATGA 1 cut(s) 130
Cfr10I RCCGGY 1 cut(s) 4
CviAII CATG 3 cut(s) 131, 296, 316
CviJI RGCY 9 cut(s) 22, 229, 250, 368, 380, 399, 451, 568, 668
CviKI_1 RGCY 9 cut(s) 22, 229, 250, 368, 380, 399, 451, 568, 668
DdeI CTNAG 1 cut(s) 75
DpnI GATC 1 cut(s) 395
DpnII GATC 1 cut(s) 393
DriI GACNNNNNGTC 1 cut(s) 316
Eam1104I CTCTTC 2 cut(s) 47, 219
Eam1105I GACNNNNNGTC 1 cut(s) 316
EarI CTCTTC 2 cut(s) 47, 219
Eco130I CCWWGG 1 cut(s) 663
EcoNI CCTNNNNNAGG 1 cut(s) 667
EcoT14I CCWWGG 1 cut(s) 663
ErhI CCWWGG 1 cut(s) 663
FaeI CATG 3 cut(s) 134, 299, 319
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FatI CATG 3 cut(s) 130, 295, 315
FauNDI CATATG 1 cut(s) 625
Fnu4HI GCNGC 4 cut(s) 230, 233, 236, 251
FokI GGATG 3 cut(s) 74, 303, 439
Fsp4HI GCNGC 4 cut(s) 230, 233, 236, 251
FspBI CTAG 2 cut(s) 594, 669
GluI GCNGC 4 cut(s) 230, 233, 236, 251
HaeIII GGCC 1 cut(s) 368
HapII CCGG 1 cut(s) 5
Hin1II CATG 3 cut(s) 134, 299, 319
HinfI GANTC 2 cut(s) 300, 659
HpaII CCGG 1 cut(s) 5
HphI GGTGA 2 cut(s) 292, 610
Hpy166II GTNNAC 1 cut(s) 591
Hpy188III TCNNGA 4 cut(s) 14, 131, 148, 383
Hpy8I GTNNAC 1 cut(s) 591
HpyAV CCTTC 3 cut(s) 271, 505, 526
HpyCH4IV ACGT 2 cut(s) 372, 700
HpyCH4V TGCA 3 cut(s) 31, 232, 464
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 37, 235, 457
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 2 cut(s) 372, 700
Hsp92II CATG 3 cut(s) 134, 299, 319
Kzo9I GATC 1 cut(s) 393
LguI GCTCTTC 2 cut(s) 47, 219
LpnPI CCDG 4 cut(s) 18, 41, 484, 624
Lsp1109I GCAGC 3 cut(s) 216, 244, 247
MaeI CTAG 2 cut(s) 594, 669
MaeII ACGT 2 cut(s) 372, 700
MaeIII GTNAC 2 cut(s) 7, 616
MalI GATC 1 cut(s) 395
MboI GATC 1 cut(s) 393
MboII GAAGA 5 cut(s) 34, 109, 236, 327, 434
MluCI AATT 2 cut(s) 34, 101
MmeI TCCRAC 1 cut(s) 528
MnlI CCTC 9 cut(s) 52, 58, 152, 357, 360, 462, 472, 501, 520
MseI TTAA 4 cut(s) 362, 375, 492, 504
MspCI CTTAAG 1 cut(s) 491
MspI CCGG 1 cut(s) 5
MwoI GCNNNNNNNGC 4 cut(s) 28, 37, 235, 457
NdeI CATATG 1 cut(s) 625
NdeII GATC 1 cut(s) 393
NlaIII CATG 3 cut(s) 134, 299, 319
NmuCI GTSAC 2 cut(s) 7, 616
PagI TCATGA 1 cut(s) 130
PciSI GCTCTTC 2 cut(s) 47, 219
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PfeI GAWTC 2 cut(s) 300, 659
PkrI GCNGC 4 cut(s) 231, 234, 237, 252
PshBI ATTAAT 1 cut(s) 362
PstI CTGCAG 1 cut(s) 234
SapI GCTCTTC 2 cut(s) 47, 219
SaqAI TTAA 4 cut(s) 362, 375, 492, 504
SatI GCNGC 4 cut(s) 230, 233, 236, 251
Sau3AI GATC 1 cut(s) 393
SfcI CTRYAG 1 cut(s) 230
SmlI CTYRAG 2 cut(s) 146, 491
SmoI CTYRAG 2 cut(s) 146, 491
Sse9I AATT 2 cut(s) 34, 101
SsiI CCGC 2 cut(s) 251, 621
SspMI CTAG 2 cut(s) 594, 669
StyI CCWWGG 1 cut(s) 663
TaiI ACGT 2 cut(s) 375, 703
TaqI TCGA 2 cut(s) 473, 585
TasI AATT 2 cut(s) 34, 101
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 2 cut(s) 300, 659
Tru1I TTAA 4 cut(s) 362, 375, 492, 504
Tru9I TTAA 4 cut(s) 362, 375, 492, 504
TseFI GTSAC 2 cut(s) 7, 616
TseI GCWGC 3 cut(s) 229, 232, 235
Tsp45I GTSAC 2 cut(s) 7, 616
TspDTI ATGAA 1 cut(s) 237
Vha464I CTTAAG 1 cut(s) 491
VspI ATTAAT 1 cut(s) 362
XagI CCTNNNNNAGG 1 cut(s) 667
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
XspI CTAG 2 cut(s) 594, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.