Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005298.1

Orthogroup ID

OG0020678

Physical Location & Seq

Genomic Coordinates Forward (+)

36869 .. 39058

Gene Structure 2190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005298.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atgatcagagatgcggtcggacagccggtcccccagcctgtcggagagctggtcccatcactcccatggaggttcggacggccgtattatgagtacctgcgatttgtactgcaagttcccagaacattgaatccaagctcaacacttaaccagaatttcaccattcatggcctatggcctagcaatcacagcactcataatggtggaattccttatgttcaaaattgtgatccaaattatatccttgatcctcaacaggaggtgagccgtaacctccaaaggaatctcagtcactcttggcccgatgtaaagccgactgcaaacgattcgaagttttggaccgacgaatacaggaagcacggcacctgcgcaaaccgtatattccgtacaccaggggattactttagaaaagcagatgacttgtatcgcagtcatcccatacaacgtttttttaatctattcgccgaccacatccgcccaggacagcaagtccccgtgagcacatttattaatctcgtaccaacggcgacagcaaggaagaatgcacgactgtggtgcaattggaatggaaccctctacctactgaaggaagtaaataatctcatactcgtccagttctgctactgcacttgtactcgtgttctgctactgcactctcactcttcgatcttagaggtttcggaatctggaactccattacaattccatcaccacatggagccgcgacagaatctttctccgccatcttcttcagaaatcaccgaagtcgcaaggtggtggagatcgaaagacgattctgagtcatcaatgaagttcgaaacctgcaccaatgtttcggatctcggcgagcctagttccggcatgcacgacgtctttctcaatggacttggcattttttgctgctgctcttccctttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004540 GO:0005575 GO:0005576 GO:0005615 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044421 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

306

Amino Acids

35.1

Weight (kDa)

7.63

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020678)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000025746
rosa_multiflora	Rmu_sc0005298.1_g000007 Rmu_sc0010184.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427960
rosa_samantha	Rh2CG051700 Rh5DG089900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	374
AatII	GACGTC	1 cut(s)	873
Acc16I	TGCGCA	1 cut(s)	370
Acc36I	ACCTGC	3 cut(s)	105, 374, 830
AccB1I	GGYRCC	1 cut(s)	362
AccII	CGCG	1 cut(s)	724
AciI	CCGC	4 cut(s)	14, 475, 722, 740
AclI	AACGTT	1 cut(s)	445
AclWI	GGATC	3 cut(s)	224, 242, 846
AcoI	YGGCCR	1 cut(s)	80
AcsI	RAATTY	2 cut(s)	154, 207
AcuI	CTGAAG	2 cut(s)	605, 735
AcyI	GRCGYC	1 cut(s)	870
AfaI	GTAC	5 cut(s)	95, 108, 388, 519, 634
AfiI	CCNNNNNNNGG	2 cut(s)	586, 857
AgsI	TTSAA	2 cut(s)	130, 221
AhdI	GACNNNNNGTC	2 cut(s)	26, 488
AjnI	CCWGG	2 cut(s)	391, 478
AleI	CACNNNNGTG	1 cut(s)	550
AloI	GAACNNNNNNTCC	2 cut(s)	115, 147
AluBI	AGCT	2 cut(s)	49, 138
AluI	AGCT	2 cut(s)	49, 138
Alw21I	GWGCWC	1 cut(s)	503
AlwI	GGATC	3 cut(s)	224, 242, 846
AoxI	GGCC	4 cut(s)	80, 169, 176, 299
ApeKI	GCWGC	2 cut(s)	900, 903
ApoI	RAATTY	2 cut(s)	154, 207
AseI	ATTAAT	1 cut(s)	510
AspLEI	GCGC	1 cut(s)	371
AspS9I	GGNCC	4 cut(s)	28, 52, 300, 339
AsuHPI	GGTGA	4 cut(s)	151, 274, 701, 751
AsuII	TTCGAA	2 cut(s)	329, 816
AvaII	GGWCC	3 cut(s)	28, 52, 339
BanI	GGYRCC	1 cut(s)	362
BauI	CACGAG	1 cut(s)	636
Bbv12I	GWGCWC	1 cut(s)	503
BbvI	GCAGC	2 cut(s)	887, 890
BccI	CCATC	3 cut(s)	64, 714, 751
BceAI	ACGGC	5 cut(s)	67, 95, 252, 376, 540
BcgI	CGANNNNNNTGC	4 cut(s)	309, 343, 537, 571
BciT130I	CCWGG	2 cut(s)	393, 480
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	2 cut(s)	180, 852
BfuAI	ACCTGC	3 cut(s)	105, 374, 830
BisI	GCNGC	3 cut(s)	722, 901, 904
BlsI	GCNGC	3 cut(s)	723, 902, 905
Bme1390I	CCNGG	2 cut(s)	393, 480
Bme18I	GGWCC	3 cut(s)	28, 52, 339
BmeRI	GACNNNNNGTC	2 cut(s)	26, 488
BmgT120I	GGNCC	4 cut(s)	28, 52, 300, 339
BmiI	GGNNCC	5 cut(s)	30, 54, 364, 571, 720
BmrFI	CCNGG	2 cut(s)	393, 480
Bpu14I	TTCGAA	2 cut(s)	329, 816
BsaHI	GRCGYC	1 cut(s)	870
BsaJI	CCNNGG	3 cut(s)	65, 392, 478
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bsc4I	CCNNNNNNNGG	2 cut(s)	586, 857
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	613
BseBI	CCWGG	2 cut(s)	393, 480
BseDI	CCNNGG	3 cut(s)	65, 392, 478
BseGI	GGATG	2 cut(s)	433, 471
BseLI	CCNNNNNNNGG	2 cut(s)	586, 857
BseMII	CTCAG	2 cut(s)	301, 789
BseNI	ACTGG	1 cut(s)	613
BseX3I	CGGCCG	1 cut(s)	80
BseXI	GCAGC	2 cut(s)	887, 890
BseYI	CCCAGC	1 cut(s)	33
BsgI	GTGCAG	3 cut(s)	610, 635, 808
Bsh1236I	CGCG	1 cut(s)	724
Bsh1285I	CGRYCG	2 cut(s)	18, 83
BshFI	GGCC	4 cut(s)	82, 171, 178, 301
BshNI	GGYRCC	1 cut(s)	362
BsiEI	CGRYCG	2 cut(s)	18, 83
BsiHKAI	GWGCWC	1 cut(s)	503
BsiSI	CCGG	2 cut(s)	26, 858
BslFI	GGGAC	3 cut(s)	14, 38, 476
BslI	CCNNNNNNNGG	2 cut(s)	586, 857
BsmFI	GGGAC	3 cut(s)	14, 38, 476
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	4 cut(s)	82, 171, 178, 301
Bsp119I	TTCGAA	2 cut(s)	329, 816
Bsp1286I	GDGCHC	1 cut(s)	503
Bsp143I	GATC	6 cut(s)	3, 229, 247, 666, 782, 838
Bsp19I	CCATGG	1 cut(s)	65
BspACI	CCGC	4 cut(s)	14, 475, 722, 740
BspANI	GGCC	4 cut(s)	82, 171, 178, 301
BspCNI	CTCAG	2 cut(s)	300, 790
BspFNI	CGCG	1 cut(s)	724
BspLI	GGNNCC	5 cut(s)	30, 54, 364, 571, 720
BspMI	ACCTGC	3 cut(s)	105, 374, 830
BspPI	GGATC	3 cut(s)	224, 242, 846
BspQI	GCTCTTC	1 cut(s)	913
BspT104I	TTCGAA	2 cut(s)	329, 816
BspT107I	GGYRCC	1 cut(s)	362
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	613
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	3 cut(s)	65, 392, 478
BssMI	GATC	6 cut(s)	3, 229, 247, 666, 782, 838
BssNI	GRCGYC	1 cut(s)	870
BssSI	CACGAG	1 cut(s)	636
BssT1I	CCWWGG	1 cut(s)	65
Bst2BI	CACGAG	1 cut(s)	636
Bst2UI	CCWGG	2 cut(s)	393, 480
Bst4CI	ACNGT	2 cut(s)	377, 552
Bst6I	CTCTTC	2 cut(s)	667, 913
BstACI	GRCGYC	1 cut(s)	870
BstAPI	GCANNNNNTGC	1 cut(s)	897
BstBI	TTCGAA	2 cut(s)	329, 816
BstC8I	GCNNGC	2 cut(s)	848, 863
BstDEI	CTNAG	4 cut(s)	287, 670, 798, 918
BstDSI	CCRYGG	1 cut(s)	65
BstENI	CCTNNNNNAGG	1 cut(s)	584
BstF5I	GGATG	2 cut(s)	433, 471
BstFNI	CGCG	1 cut(s)	724
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	6 cut(s)	6, 232, 250, 669, 785, 841
BstMBI	GATC	6 cut(s)	3, 229, 247, 666, 782, 838
BstMCI	CGRYCG	2 cut(s)	18, 83
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 897
BstNI	CCWGG	2 cut(s)	393, 480
BstNSI	RCATGY	1 cut(s)	865
BstSCI	CCNGG	2 cut(s)	391, 478
BstUI	CGCG	1 cut(s)	724
BstV1I	GCAGC	2 cut(s)	887, 890
BstX2I	RGATCY	1 cut(s)	838
BstYI	RGATCY	1 cut(s)	838
BstZI	CGGCCG	1 cut(s)	80
BsuRI	GGCC	4 cut(s)	82, 171, 178, 301
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	433, 471
BveI	ACCTGC	3 cut(s)	105, 374, 830
Cac8I	GCNNGC	2 cut(s)	848, 863
CfoI	GCGC	1 cut(s)	371
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	4 cut(s)	28, 52, 300, 339
Csp6I	GTAC	5 cut(s)	94, 107, 387, 518, 633
CviAII	CATG	4 cut(s)	66, 167, 715, 862
CviQI	GTAC	5 cut(s)	94, 107, 387, 518, 633
DdeI	CTNAG	4 cut(s)	287, 670, 798, 918
DpnI	GATC	6 cut(s)	5, 231, 249, 668, 784, 840
DpnII	GATC	6 cut(s)	3, 229, 247, 666, 782, 838
DriI	GACNNNNNGTC	2 cut(s)	26, 488
EaeI	YGGCCR	1 cut(s)	80
EagI	CGGCCG	1 cut(s)	80
Eam1104I	CTCTTC	2 cut(s)	667, 913
Eam1105I	GACNNNNNGTC	2 cut(s)	26, 488
EarI	CTCTTC	2 cut(s)	667, 913
EciI	GGCGGA	2 cut(s)	464, 729
EclXI	CGGCCG	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	65
Eco47I	GGWCC	3 cut(s)	28, 52, 339
Eco52I	CGGCCG	1 cut(s)	80
Eco57I	CTGAAG	2 cut(s)	605, 735
EcoNI	CCTNNNNNAGG	1 cut(s)	584
EcoRI	GAATTC	1 cut(s)	207
EcoRII	CCWGG	2 cut(s)	391, 478
EcoT14I	CCWWGG	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	4 cut(s)	69, 170, 718, 865
FaqI	GGGAC	3 cut(s)	14, 38, 476
FatI	CATG	4 cut(s)	65, 166, 714, 861
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	3 cut(s)	722, 901, 904
FokI	GGATG	2 cut(s)	420, 458
Fsp4HI	GCNGC	3 cut(s)	722, 901, 904
FspBI	CTAG	2 cut(s)	180, 852
FspI	TGCGCA	1 cut(s)	370
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	3 cut(s)	722, 901, 904
GsaI	CCCAGC	1 cut(s)	37
HaeIII	GGCC	4 cut(s)	82, 171, 178, 301
HapII	CCGG	2 cut(s)	26, 858
HhaI	GCGC	1 cut(s)	371
Hin1I	GRCGYC	1 cut(s)	870
Hin1II	CATG	4 cut(s)	69, 170, 718, 865
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HinfI	GANTC	7 cut(s)	130, 283, 326, 683, 730, 794, 800
HpaII	CCGG	2 cut(s)	26, 858
HphI	GGTGA	4 cut(s)	151, 274, 701, 751
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	8 cut(s)	8, 20, 44, 77, 682, 754, 799, 838
Hpy188III	TCNNGA	1 cut(s)	687
Hpy8I	GTNNAC	1 cut(s)	389
Hpy99I	CGWCG	2 cut(s)	347, 872
HpyAV	CCTTC	1 cut(s)	580
HpyCH4III	ACNGT	2 cut(s)	377, 552
HpyCH4IV	ACGT	2 cut(s)	445, 870
HpyCH4V	TGCA	8 cut(s)	112, 320, 545, 558, 627, 652, 825, 865
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 897
HpyF3I	CTNAG	4 cut(s)	287, 670, 798, 918
HpySE526I	ACGT	2 cut(s)	445, 870
Hsp92I	GRCGYC	1 cut(s)	870
Hsp92II	CATG	4 cut(s)	69, 170, 718, 865
HspAI	GCGC	1 cut(s)	369
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	6 cut(s)	3, 229, 247, 666, 782, 838
LguI	GCTCTTC	1 cut(s)	913
LmnI	GCTCC	1 cut(s)	718
Lsp1109I	GCAGC	2 cut(s)	887, 890
MaeI	CTAG	2 cut(s)	180, 852
MaeII	ACGT	2 cut(s)	445, 870
MaeIII	GTNAC	2 cut(s)	269, 290
MalI	GATC	6 cut(s)	5, 231, 249, 668, 784, 840
MboI	GATC	6 cut(s)	3, 229, 247, 666, 782, 838
MboII	GAAGA	5 cut(s)	550, 654, 738, 741, 900
MfeI	CAATTG	1 cut(s)	559
MflI	RGATCY	1 cut(s)	838
MhlI	GDGCHC	1 cut(s)	503
MluCI	AATT	6 cut(s)	154, 207, 223, 235, 559, 701
MlyI	GAGTC	1 cut(s)	809
MmeI	TCCRAC	1 cut(s)	22
MnlI	CCTC	6 cut(s)	63, 253, 261, 284, 584, 667
MseI	TTAA	3 cut(s)	147, 453, 510
MslI	CAYNNNNRTG	3 cut(s)	64, 201, 550
MspI	CCGG	2 cut(s)	26, 858
MspR9I	CCNGG	2 cut(s)	393, 480
MunI	CAATTG	1 cut(s)	559
Mva1269I	GAATGC	1 cut(s)	547
MvaI	CCWGG	2 cut(s)	393, 480
MvnI	CGCG	1 cut(s)	724
MwoI	GCNNNNNNNGC	2 cut(s)	189, 897
NcoI	CCATGG	1 cut(s)	65
NdeII	GATC	6 cut(s)	3, 229, 247, 666, 782, 838
NlaIII	CATG	4 cut(s)	69, 170, 718, 865
NlaIV	GGNNCC	5 cut(s)	30, 54, 364, 571, 720
NmeAIII	GCCGAG	1 cut(s)	822
NmuCI	GTSAC	1 cut(s)	290
NsbI	TGCGCA	1 cut(s)	370
NspI	RCATGY	1 cut(s)	865
NspV	TTCGAA	2 cut(s)	329, 816
OliI	CACNNNNGTG	1 cut(s)	550
PaeI	GCATGC	1 cut(s)	865
PaqCI	CACCTGC	1 cut(s)	374
PciSI	GCTCTTC	1 cut(s)	913
PctI	GAATGC	1 cut(s)	547
PfeI	GAWTC	6 cut(s)	130, 283, 326, 683, 730, 794
PkrI	GCNGC	3 cut(s)	723, 902, 905
PleI	GAGTC	1 cut(s)	808
PpsI	GAGTC	1 cut(s)	808
PshBI	ATTAAT	1 cut(s)	510
Psp1406I	AACGTT	1 cut(s)	445
Psp6I	CCWGG	2 cut(s)	391, 478
PspFI	CCCAGC	1 cut(s)	33
PspGI	CCWGG	2 cut(s)	391, 478
PspN4I	GGNNCC	5 cut(s)	30, 54, 364, 571, 720
PspPI	GGNCC	4 cut(s)	28, 52, 300, 339
PsrI	GAACNNNNNNTAC	2 cut(s)	99, 131
PsuI	RGATCY	1 cut(s)	838
RsaI	GTAC	5 cut(s)	95, 108, 388, 519, 634
RsaNI	GTAC	5 cut(s)	94, 107, 387, 518, 633
RseI	CAYNNNNRTG	3 cut(s)	64, 201, 550
SapI	GCTCTTC	1 cut(s)	913
SaqAI	TTAA	3 cut(s)	147, 453, 510
SatI	GCNGC	3 cut(s)	722, 901, 904
Sau3AI	GATC	6 cut(s)	3, 229, 247, 666, 782, 838
Sau96I	GGNCC	4 cut(s)	28, 52, 300, 339
SchI	GAGTC	1 cut(s)	809
ScrFI	CCNGG	2 cut(s)	393, 480
SduI	GDGCHC	1 cut(s)	503
SfuI	TTCGAA	2 cut(s)	329, 816
SinI	GGWCC	3 cut(s)	28, 52, 339
SmiMI	CAYNNNNRTG	3 cut(s)	64, 201, 550
SphI	GCATGC	1 cut(s)	865
Sse9I	AATT	6 cut(s)	154, 207, 223, 235, 559, 701
SsiI	CCGC	4 cut(s)	14, 475, 722, 740
SspMI	CTAG	2 cut(s)	180, 852
StyD4I	CCNGG	2 cut(s)	391, 478
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	2 cut(s)	377, 552
TaiI	ACGT	2 cut(s)	448, 873
TaqI	TCGA	4 cut(s)	329, 665, 785, 816
TaqII	GACCGA	1 cut(s)	356
TasI	AATT	6 cut(s)	154, 207, 223, 235, 559, 701
TatI	WGTACW	2 cut(s)	106, 632
TauI	GCSGC	1 cut(s)	724
TfiI	GAWTC	6 cut(s)	130, 283, 326, 683, 730, 794
Tru1I	TTAA	3 cut(s)	147, 453, 510
Tru9I	TTAA	3 cut(s)	147, 453, 510
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	2 cut(s)	900, 903
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	2 cut(s)	155, 824
TspGWI	ACGGA	1 cut(s)	374
VpaK11BI	GGWCC	3 cut(s)	28, 52, 339
VspI	ATTAAT	1 cut(s)	510
XagI	CCTNNNNNAGG	1 cut(s)	584
XapI	RAATTY	2 cut(s)	154, 207
XceI	RCATGY	1 cut(s)	865
XcmI	CCANNNNNNNNNTGG	1 cut(s)	63
XspI	CTAG	2 cut(s)	180, 852
ZraI	GACGTC	1 cut(s)	871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.