Rh5DG089900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0020678
Physical Location & Seq
Reverse (-)
8073611 .. 8093443
19833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG089900.1

Sequence Viewer

Length: 243 bp
ATGATTCACCAATCAAGAACGTACAACTACCTGGAAGTCACTCCACATAATCTTTCTCCCCCGTCTTCTTCAGAAATCACCGGAGTCACAAGGTGGTGGAGATTGAAAGATGATTCTGAGTCAACAATGAAGTTCGAAACTTGCACCAATGTTTCGGATCTTGGCGAGCCTAGTTCCGGCATGCACGGCGTCTTTCTTAGTGGACTTGGCATTTTTCGCCGTCGCTCTTCCCTTTCTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.03

Weight (kDa)

6.82

Isoelectric Point (pI)

90.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020678)

Species Orthologous Gene IDs
rosa_laevigata RLG00000025746
rosa_multiflora Rmu_sc0005298.1_g000007 Rmu_sc0010184.1_g000001
rosa_roxburghii Rroxscaffold_6G00427960
rosa_samantha Rh2CG051700 Rh5DG089900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 165
AcuI CTGAAG 1 cut(s) 54
AcyI GRCGYC 1 cut(s) 189
AdeI CACNNNGTG 1 cut(s) 93
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 1 cut(s) 106
AjnI CCWGG 1 cut(s) 30
AlwI GGATC 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 70
AsuII TTCGAA 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 57
BceAI ACGGC 2 cut(s) 202, 204
BciT130I CCWGG 1 cut(s) 32
BfaI CTAG 1 cut(s) 171
Bme1390I CCNGG 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 32
BpiI GAAGAC 1 cut(s) 57
Bpu14I TTCGAA 1 cut(s) 135
BsaHI GRCGYC 1 cut(s) 189
BsaWI WCCGGW 1 cut(s) 80
Bsc4I CCNNNNNNNGG 1 cut(s) 176
BseBI CCWGG 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMII CTCAG 1 cut(s) 108
BsiSI CCGG 2 cut(s) 81, 177
BslI CCNNNNNNNGG 1 cut(s) 176
Bsp119I TTCGAA 1 cut(s) 135
Bsp143I GATC 1 cut(s) 157
BspCNI CTCAG 1 cut(s) 109
BspPI GGATC 1 cut(s) 165
BspQI GCTCTTC 1 cut(s) 232
BspT104I TTCGAA 1 cut(s) 135
BssMI GATC 1 cut(s) 157
BssNI GRCGYC 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 232
BstACI GRCGYC 1 cut(s) 189
BstBI TTCGAA 1 cut(s) 135
BstC8I GCNNGC 2 cut(s) 167, 182
BstDEI CTNAG 3 cut(s) 117, 197, 237
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 186, 216
BstNI CCWGG 1 cut(s) 32
BstNSI RCATGY 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 30
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
Cac8I GCNNGC 2 cut(s) 167, 182
CseI GACGC 1 cut(s) 178
Csp6I GTAC 1 cut(s) 22
CviAII CATG 1 cut(s) 181
CviJI RGCY 1 cut(s) 169
CviKI_1 RGCY 1 cut(s) 169
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 3 cut(s) 117, 197, 237
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
DraIII CACNNNGTG 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 30
FaeI CATG 1 cut(s) 184
FaiI YATR 2 cut(s) 48, 182
FatI CATG 1 cut(s) 180
FspBI CTAG 1 cut(s) 171
HapII CCGG 2 cut(s) 81, 177
HgaI GACGC 1 cut(s) 178
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 1 cut(s) 184
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
HinfI GANTC 4 cut(s) 4, 84, 113, 119
HpaII CCGG 2 cut(s) 81, 177
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 2 cut(s) 123, 203
Hpy188I TCNGA 3 cut(s) 73, 118, 157
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 2 cut(s) 123, 203
Hpy99I CGWCG 1 cut(s) 225
HpyCH4IV ACGT 1 cut(s) 20
HpyCH4V TGCA 2 cut(s) 144, 184
HpyF10VI GCNNNNNNNGC 2 cut(s) 186, 216
HpyF3I CTNAG 3 cut(s) 117, 197, 237
HpySE526I ACGT 1 cut(s) 20
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 1 cut(s) 184
Kzo9I GATC 1 cut(s) 157
LguI GCTCTTC 1 cut(s) 232
LpnPI CCDG 4 cut(s) 17, 44, 94, 190
MaeI CTAG 1 cut(s) 171
MaeII ACGT 1 cut(s) 20
MaeIII GTNAC 2 cut(s) 37, 85
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 3 cut(s) 57, 60, 219
MflI RGATCY 1 cut(s) 157
MlyI GAGTC 2 cut(s) 93, 128
MspI CCGG 2 cut(s) 81, 177
MspR9I CCNGG 1 cut(s) 32
MvaI CCWGG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 186, 216
NdeII GATC 1 cut(s) 157
NlaIII CATG 1 cut(s) 184
NmuCI GTSAC 2 cut(s) 37, 85
NspI RCATGY 1 cut(s) 184
NspV TTCGAA 1 cut(s) 135
PaeI GCATGC 1 cut(s) 184
PciSI GCTCTTC 1 cut(s) 232
PfeI GAWTC 2 cut(s) 4, 113
PleI GAGTC 2 cut(s) 92, 127
PpsI GAGTC 2 cut(s) 92, 127
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
PsuI RGATCY 1 cut(s) 157
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SapI GCTCTTC 1 cut(s) 232
Sau3AI GATC 1 cut(s) 157
SchI GAGTC 2 cut(s) 93, 128
ScrFI CCNGG 1 cut(s) 32
SetI ASST 3 cut(s) 23, 33, 95
SfuI TTCGAA 1 cut(s) 135
SphI GCATGC 1 cut(s) 184
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 30
TaiI ACGT 1 cut(s) 23
TaqI TCGA 1 cut(s) 135
TfiI GAWTC 2 cut(s) 4, 113
TseFI GTSAC 2 cut(s) 37, 85
Tsp45I GTSAC 2 cut(s) 37, 85
TspDTI ATGAA 1 cut(s) 143
XceI RCATGY 1 cut(s) 184
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.