Rh2CG051700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
4068650 .. 4068853
204 bp
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UTR
Exon/CDS
Intron
Rh2CG051700.1

Sequence Viewer

Length: 204 bp
ATGGAACCGCGACGGAATCTTTCTCCGCCGTCTTCTTCAGAAATCACCGGAGTCGCAAGGTCTAAGTCAGCCATGAAGTTCGAAACCTGCACCGATGTTGCTGATCTCGGTGAGCCTAGTTCTGGCATGCACGGCGTCTTTCTCAGTGGACTCGGCATTTTCGCCACCGCTCTTCCCTTTCTCAGTGATCAAAACCCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.06

Weight (kDa)

4.83

Isoelectric Point (pI)

72.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020678)

Species Orthologous Gene IDs
rosa_laevigata RLG00000025746
rosa_multiflora Rmu_sc0005298.1_g000007 Rmu_sc0010184.1_g000001
rosa_roxburghii Rroxscaffold_6G00427960
rosa_samantha Rh2CG051700 Rh5DG089900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 95
AccBSI CCGCTC 1 cut(s) 170
AccII CGCG 1 cut(s) 10
AciI CCGC 3 cut(s) 8, 26, 168
AcuI CTGAAG 1 cut(s) 21
AcyI GRCGYC 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 122
AsuHPI GGTGA 2 cut(s) 37, 122
AsuII TTCGAA 1 cut(s) 81
BbsI GAAGAC 1 cut(s) 24
BceAI ACGGC 2 cut(s) 13, 148
BclI TGATCA 1 cut(s) 187
BfaI CTAG 1 cut(s) 117
BfuAI ACCTGC 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 24
Bpu14I TTCGAA 1 cut(s) 81
BsaHI GRCGYC 1 cut(s) 135
BsaWI WCCGGW 1 cut(s) 47
Bsc4I CCNNNNNNNGG 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMII CTCAG 2 cut(s) 157, 196
BsgI GTGCAG 1 cut(s) 73
Bsh1236I CGCG 1 cut(s) 10
BsiSI CCGG 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 122
Bsp119I TTCGAA 1 cut(s) 81
Bsp143I GATC 2 cut(s) 103, 187
BspACI CCGC 3 cut(s) 8, 26, 168
BspCNI CTCAG 2 cut(s) 156, 195
BspFNI CGCG 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 95
BspQI GCTCTTC 1 cut(s) 177
BspT104I TTCGAA 1 cut(s) 81
BsrBI CCGCTC 1 cut(s) 170
BssMI GATC 2 cut(s) 103, 187
BssNI GRCGYC 1 cut(s) 135
Bst6I CTCTTC 1 cut(s) 177
BstACI GRCGYC 1 cut(s) 135
BstBI TTCGAA 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 3 cut(s) 63, 143, 182
BstFNI CGCG 1 cut(s) 10
BstKTI GATC 2 cut(s) 106, 190
BstMBI GATC 2 cut(s) 103, 187
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNSI RCATGY 1 cut(s) 130
BstUI CGCG 1 cut(s) 10
BstV2I GAAGAC 1 cut(s) 24
BtsIMutI CAGTG 2 cut(s) 151, 190
BveI ACCTGC 1 cut(s) 95
Cac8I GCNNGC 1 cut(s) 128
CseI GACGC 1 cut(s) 124
CviAII CATG 2 cut(s) 73, 127
CviJI RGCY 2 cut(s) 71, 115
CviKI_1 RGCY 2 cut(s) 71, 115
DdeI CTNAG 3 cut(s) 63, 143, 182
DpnI GATC 2 cut(s) 105, 189
DpnII GATC 2 cut(s) 103, 187
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
EciI GGCGGA 1 cut(s) 15
Eco57I CTGAAG 1 cut(s) 21
FaeI CATG 2 cut(s) 76, 130
FaiI YATR 2 cut(s) 74, 128
FatI CATG 2 cut(s) 72, 126
FbaI TGATCA 1 cut(s) 187
FspBI CTAG 1 cut(s) 117
HapII CCGG 1 cut(s) 48
HgaI GACGC 1 cut(s) 124
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 2 cut(s) 76, 130
HinfI GANTC 3 cut(s) 16, 51, 150
HpaII CCGG 1 cut(s) 48
HphI GGTGA 2 cut(s) 37, 122
Hpy166II GTNNAC 1 cut(s) 149
Hpy188I TCNGA 1 cut(s) 40
Hpy8I GTNNAC 1 cut(s) 149
Hpy99I CGWCG 1 cut(s) 15
HpyCH4V TGCA 2 cut(s) 90, 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 3 cut(s) 63, 143, 182
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 2 cut(s) 76, 130
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 2 cut(s) 103, 187
LguI GCTCTTC 1 cut(s) 177
LpnPI CCDG 3 cut(s) 61, 100, 108
MaeI CTAG 1 cut(s) 117
MalI GATC 2 cut(s) 105, 189
MbiI CCGCTC 1 cut(s) 170
MboI GATC 2 cut(s) 103, 187
MboII GAAGA 3 cut(s) 24, 27, 164
MlyI GAGTC 2 cut(s) 60, 144
MspI CCGG 1 cut(s) 48
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 132
NdeII GATC 2 cut(s) 103, 187
NlaIII CATG 2 cut(s) 76, 130
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 132
NspI RCATGY 1 cut(s) 130
NspV TTCGAA 1 cut(s) 81
PaeI GCATGC 1 cut(s) 130
PciSI GCTCTTC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 16
PleI GAGTC 2 cut(s) 59, 144
PpsI GAGTC 2 cut(s) 59, 144
PspN4I GGNNCC 1 cut(s) 6
SapI GCTCTTC 1 cut(s) 177
Sau3AI GATC 2 cut(s) 103, 187
SchI GAGTC 2 cut(s) 60, 144
SetI ASST 2 cut(s) 62, 89
SfuI TTCGAA 1 cut(s) 81
SphI GCATGC 1 cut(s) 130
SsiI CCGC 3 cut(s) 8, 26, 168
SspMI CTAG 1 cut(s) 117
TaqI TCGA 1 cut(s) 81
TfiI GAWTC 1 cut(s) 16
TscAI CASTG 2 cut(s) 151, 190
TspDTI ATGAA 1 cut(s) 89
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 2 cut(s) 151, 190
XceI RCATGY 1 cut(s) 130
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.