Rmu_sc0005366.1_g000012

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005366.1
OG0015155
Physical Location & Seq
Forward (+)
59257 .. 66500
7244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005366.1_g000012.1.cds

Sequence Viewer

Length: 4176 bp
atggtgaggacgaagaaaggaggacgaccggccactctgatttcagaagaggcaaggatccgaatacgtgacatactccagcagttcctggagtccaatgaagaagtttacacatttgggacagacctgacggttaatgaacgggcttacgtccacgaacagtgccgcaagatggatatgaaatccaagagctccgggtcgggtaaaacgcgcaaggtttcggtttacaggctttttaggatggaggcaatcagcaatggtaaggaaagaatccctcaggtgacgttttccggggacacaagagaagttttgggggatttgtttacgtggtacccacccggagatggagaggaacccaaagaaaggatccgtgaagatagtgacaagtttcagaaactccaccgcaagaaagacccgctgttctgcagaccttcgatgagccagaacgaaattgcaaagaaagtggaaatgcaggctgccaaaatgagaaaagccaagattactaaagagaggtctaacctacccatggcaccctacagggatgtggtaacgtcagcagttgaatctcaccaggttgttcttgtatctggtgagactgggtgcggaaagaccacacaggtgccacaatatcttttggaccatatgtggggtaagggtgaggcatgtaaaatagtgtgcactcaacccaggcgtatctcagccatatcagttgctgagagaatctcttatgaaagaggacagaatgttggggaggatattgggtacaagatacggttggaaagcaaaggtgggaggcactcatctgtggtgttctgcacaaatgggattctactgaggattctaatttccagaggcggtggtaggtcaaaaacagatgcatcgaataaagaaaccaaacaacaagatctctctgacataactcacattattgtggatgaaattcatgaaagggatcgccactctgatttcattctggctattctcagagacatgcttccttcacatcctcatctgcatctgatattgatgagtgcgactgttgatgtggaacggttttcacaatattttggtggctgcccaattatccgtgtcccagggttcacttatcctgtcaaatctttctatttggaggatgtattgtctatcttgagatctgtaagaccgggtagagtaggagatgtttgcatgctgctatcatttggtgcagactgccaattacgggccaaggatggaaccactgcattagagttggctgagcaggtaaaccaattagaatctgctcagatgttgaaagagcatatggaaagtgctcgttctaactctatggaagaacaaaatttgctcaataaatatctccaatattttaatcctgagaatattgatttcattcttatcgagcaattgttagggaaaatttttagtgattcgaaagatggagctattcttgtttttcttccagggtgggatgatataaataaaatgagggacagattactcacgaacccatatttcagagatccttctaagtgtgtgattatatctctacattcaatggttccagctgctgaacagaagaaggtcttcattcgtccacctagtggttgccgaaaaattgttctttcaaccaatattgctgaaactgcagtcactattgatgatgttgtttatgttataaacacgggtcggatgaaagaaaaaaattatgatccttttagtaatgtttcaactcttcaatcttcttgggtgtcaaaagcgaatgccaagcagcgacaggggcgtgcgggccgttgtcagcctggaatctgttatcatctttactctaaacttcgagcagctgcattgtcagattttcaggtgcctgagattaggagaatgccaatcgaggaactttgccttcaggtgaagttgcttgatccagattgcaagatagacgagttcctaaacaagacgctggatcctcctcattctgagaccatacacaatgcgatttctgttcttcgagatatcggggctttgtcagtggacgataaacttacagaacttggggaaaagctaggttctttacctgttcatccattgacaagcaagatgctattctttgccacactgatgaactgtctcgacccagctttaactctggcctgtgctgccgactacaaggatccattctctcttcctatgatgcctgaggaaaaggagaaagctgctgctgctaaggctgaactgtgttcattgtatggtgggaacagtgatcagctagcagtcatagcagcatttgactgctggaagattgcaaaagaacagggtaaagagaatcggttctgtgctaaatactttgtctctgcaagtaccatgcagatgctatctggtatgcgaaagcaactccaaacagagctaattcggctggggtttattcctgaggatgtgtctagatgtagcttgaatgcacgcaatccaggtataatccacgctgtccttgtggctggtctgtatcccatgttgggaagattgctttcttctactaagagtgggaaaaaaaaaggatcctttgtagaaattcctgatggtagtaaagttcgtttgcaccctcgatctgctaattttaaaatagcgttcaaggcacgtggtggctctcctttggttgtatatgatgagataacccgtggggatgggggttcgaatatacgaaactgtactgttgtcgggccacttccattactattgctgtcgacagaaatagctgttgctccagccaatgatgatgagggaagtgatgtcgatgataatgagtgtgaaagtgatgaagatgcaatgaagatagattctaagtcgggtgaacaggccgaagagaagattatgtcatcacctgataaatctgtcatggttatagtggatgggtggctttgttttgagttgaaagctcttgacgttgctcagatctattgcttgagggaacgcctgtctgcagcaatactatttacggttactcatccaaaggaagttttacctcctgatcttggggcatctatttatgctatagcctgtgttctatcttatgatggtctatctgggattccattgccaaagcctatggatttgccgaattcagatttagaacttgagatcggtaaagatggaaaggcacagtctaaagtgacaggaaataaagcagcaaaatcaaaggagccattacgtcagagagtagtttgtcagaggtctctatcgcgagctactgatttacctgccttgaatggatttgcaaagttgtgtgacgacccatcaattcagagcgttcccccaccggctttcgcgaacgctactgatttacctgccttaataaatggagttgcaaagttgagtggcgaccgatcaattcacagtgctcccccaccagcttttgcgaacacaatcccgccgcccacttcacaagttccagcagccaatgatgatgagggaagtgatgtcgatgataatgagtatgaaagtgatgaagatgcaatgaagatagattctaagtcgggtgaacaggccgaagagaagattatgtcatcacctgataaatcagtcatggttatagtggatgggtggctttgttttgagttgaaagctcttgacgttgctcagatctattgcttgagggaacgcctgtctgcagcaatactatttacggttactcatccaaaggaagttttacctcctgatcttggggcatctatttatgctatagcctgtgttctatcttatgatggtctatctgggattccattgccaaagcctatggatttgccgaattcagatttagaacttgagatcggtaaagatggaaaggcacagtttaaagtgacaggaaataaagcagcaaaatcaaaggagccattacgtcagagagtagtttgtcagaggtctctatcgcgagctactgatttacctgccttgaatggatttgcaaagttgtgtgacgacccatcaattcagagcgttcccccaccggctttcgcgaacgctactgatttacctgccttaataaatggagttgcaaagttgagtggcgaccgatcaattcacagtgctcccccaccagcttttgcgaacacaatcccgccgcccacttcacaagttccagcaggtcctgtcgcaggaaacaagcggaagaagcgccggaatcaggctggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007292 GO:0007346 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0009994 GO:0010033 GO:0010467 GO:0012505 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019899 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0032392 GO:0032501 GO:0032502 GO:0032504 GO:0032508 GO:0032991 GO:0034097 GO:0034458 GO:0034612 GO:0034641 GO:0035770 GO:0035821 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043900 GO:0043902 GO:0043903 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044788 GO:0044794 GO:0044827 GO:0044829 GO:0045069 GO:0045070 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0048232 GO:0048468 GO:0048477 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048524 GO:0048599 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050792 GO:0050794 GO:0050896 GO:0051276 GO:0051445 GO:0051446 GO:0051702 GO:0051704 GO:0051726 GO:0051728 GO:0051729 GO:0051817 GO:0051851 GO:0060184 GO:0065007 GO:0070035 GO:0070063 GO:0070555 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363 GO:1903900 GO:1903902 GO:1990247 GO:1990904 GO:2000241 GO:2000243
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind R3H

Protein Analysis

1391

Amino Acids

153.06

Weight (kDa)

7.06

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30800 AT2G30800
fragaria_vesca FvH4_6g38870
malus_domestica MD09G1146500.v1.1
prunus_persica Prupe.3G179000_v2.0.a1
pyrus_communis pycom09g06680
rosa_chinensis RchiOBHm_Chr2g0152461
rosa_laevigata RLG00000020635
rosa_multiflora Rmu_sc0005366.1_g000012
rosa_roxburghii Rroxscaffold_2G00095700
rosa_rugosa Rorug02G0432900
rosa_samantha Rh2AG494700 Rh2BG506900 Rh2CG480900 Rh2DG518100
rosa_wichuraiana Rw2G040710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1673
Acc36I ACCTGC 6 cut(s) 1249, 3250, 3337, 3937, 4024, 4115
Acc65I GGTACC 1 cut(s) 330
AccB1I GGYRCC 4 cut(s) 330, 529, 619, 1855
AccB7I CCANNNNNTGG 1 cut(s) 1598
AccI GTMKAC 1 cut(s) 2729
AccII CGCG 5 cut(s) 211, 3226, 3311, 3913, 3998
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 6 cut(s) 939, 1336, 1413, 2556, 3103, 3790
AcuI CTGAAG 1 cut(s) 1880
AcvI CACGTG 1 cut(s) 2624
AdeI CACNNNGTG 2 cut(s) 1598, 2627
AfaI GTAC 4 cut(s) 332, 764, 2350, 2695
AjnI CCWGG 7 cut(s) 87, 570, 686, 1093, 1456, 1795, 2455
AleI CACNNNNGTG 1 cut(s) 617
Alw21I GWGCWC 5 cut(s) 194, 680, 1312, 3385, 4072
Alw26I GTCTC 7 cut(s) 587, 981, 1964, 2123, 2344, 3222, 3909
Alw44I GTGCAC 1 cut(s) 676
AlwNI CAGNNNCTG 4 cut(s) 88, 713, 1565, 4130
AoxI GGCC 7 cut(s) 30, 1221, 1783, 2139, 2705, 2841, 3528
ApaLI GTGCAC 1 cut(s) 676
ApoI RAATTY 6 cut(s) 939, 1336, 1413, 2556, 3103, 3790
Asp700I GAANNNNTTC 2 cut(s) 1580, 2318
Asp718I GGTACC 1 cut(s) 330
AspLEI GCGC 2 cut(s) 213, 4158
AspS9I GGNCC 5 cut(s) 637, 1221, 1783, 2705, 4127
AsuC2I CCSGG 4 cut(s) 196, 292, 339, 1164
AsuII TTCGAA 2 cut(s) 1427, 2678
AsuNHI GCTAGC 1 cut(s) 2257
AvaII GGWCC 2 cut(s) 637, 4127
AxyI CCTNAGG 3 cut(s) 276, 2187, 2418
BaeGI GKGCMC 1 cut(s) 680
BamHI GGATCC 5 cut(s) 57, 366, 1954, 2161, 2543
BanI GGYRCC 4 cut(s) 330, 529, 619, 1855
BanII GRGCYC 1 cut(s) 194
BbrPI CACGTG 1 cut(s) 2624
BbsI GAAGAC 1 cut(s) 1573
Bbv12I GWGCWC 5 cut(s) 194, 680, 1312, 3385, 4072
BceAI ACGGC 1 cut(s) 1770
BciT130I CCWGG 7 cut(s) 89, 572, 688, 1095, 1458, 1797, 2457
BciVI GTATCC 1 cut(s) 2502
BclI TGATCA 1 cut(s) 2251
BcnI CCSGG 4 cut(s) 196, 292, 339, 1164
BcoDI GTCTC 7 cut(s) 587, 981, 1964, 2123, 2344, 3222, 3909
BfaI CTAG 4 cut(s) 1596, 2054, 2258, 2430
BfmI CTRYAG 7 cut(s) 424, 535, 1641, 2964, 3036, 3651, 3723
BfoI RGCGCY 1 cut(s) 4159
BfuAI ACCTGC 6 cut(s) 1249, 3250, 3337, 3937, 4024, 4115
BfuI GTATCC 1 cut(s) 2502
BglII AGATCT 4 cut(s) 904, 1151, 2937, 3624
BlpI GCTNAGC 1 cut(s) 1254
Bme18I GGWCC 2 cut(s) 637, 4127
BmgT120I GGNCC 5 cut(s) 637, 1221, 1783, 2705, 4127
BmrI ACTGGG 1 cut(s) 606
BmtI GCTAGC 1 cut(s) 2261
BmuI ACTGGG 1 cut(s) 606
BpiI GAAGAC 1 cut(s) 1573
BplI GAGNNNNNCTC 2 cut(s) 707, 739
BpmI CTGGAG 3 cut(s) 62, 110, 2733
Bpu10I CCTNAGC 1 cut(s) 2214
Bpu1102I GCTNAGC 1 cut(s) 1254
Bpu14I TTCGAA 2 cut(s) 1427, 2678
BpuEI CTTGAG 5 cut(s) 1168, 2968, 3140, 3655, 3827
BpuMI CCSGG 4 cut(s) 196, 292, 339, 1164
BsaAI YACGTR 3 cut(s) 68, 327, 2624
BsaI GGTCTC 3 cut(s) 1964, 3222, 3909
BsaJI CCNNGG 8 cut(s) 291, 525, 686, 1093, 1094, 1224, 1457, 2662
Bse118I RCCGGY 3 cut(s) 28, 3301, 3988
Bse1I ACTGG 1 cut(s) 601
Bse21I CCTNAGG 3 cut(s) 276, 2187, 2418
Bse3DI GCAATG 5 cut(s) 262, 2817, 3077, 3504, 3764
BseBI CCWGG 7 cut(s) 89, 572, 688, 1095, 1458, 1797, 2457
BseDI CCNNGG 8 cut(s) 291, 525, 686, 1093, 1094, 1224, 1457, 2662
BseMI GCAATG 5 cut(s) 262, 2817, 3077, 3504, 3764
BseNI ACTGG 1 cut(s) 601
BseRI GAGGAG 1 cut(s) 1950
BseSI GKGCMC 1 cut(s) 680
BseYI CCCAGC 2 cut(s) 2125, 2404
BsgI GTGCAG 2 cut(s) 799, 1224
Bsh1236I CGCG 5 cut(s) 211, 3226, 3311, 3913, 3998
Bsh1285I CGRYCG 3 cut(s) 29, 3367, 4054
BshFI GGCC 7 cut(s) 32, 1223, 1785, 2141, 2707, 2843, 3530
BshNI GGYRCC 4 cut(s) 330, 529, 619, 1855
BsiEI CGRYCG 3 cut(s) 29, 3367, 4054
BsiHKAI GWGCWC 5 cut(s) 194, 680, 1312, 3385, 4072
BsiSI CCGG 8 cut(s) 29, 195, 291, 339, 1163, 3302, 3989, 4159
BslFI GGGAC 4 cut(s) 133, 308, 1076, 1499
BsmAI GTCTC 7 cut(s) 587, 981, 1964, 2123, 2344, 3222, 3909
BsmFI GGGAC 4 cut(s) 133, 308, 1076, 1499
BsmI GAATGC 3 cut(s) 1762, 1878, 2449
BsnI GGCC 7 cut(s) 32, 1223, 1785, 2141, 2707, 2843, 3530
Bso31I GGTCTC 3 cut(s) 1964, 3222, 3909
Bsp119I TTCGAA 2 cut(s) 1427, 2678
Bsp1286I GDGCHC 5 cut(s) 194, 680, 1312, 3385, 4072
Bsp1720I GCTNAGC 1 cut(s) 1254
Bsp19I CCATGG 1 cut(s) 525
Bsp68I TCGCGA 4 cut(s) 3226, 3311, 3913, 3998
BspANI GGCC 7 cut(s) 32, 1223, 1785, 2141, 2707, 2843, 3530
BspFNI CGCG 5 cut(s) 211, 3226, 3311, 3913, 3998
BspHI TCATGA 1 cut(s) 943
BspMAI CTGCAG 4 cut(s) 428, 1645, 2968, 3655
BspMI ACCTGC 6 cut(s) 1249, 3250, 3337, 3937, 4024, 4115
BspOI GCTAGC 1 cut(s) 2261
BspT104I TTCGAA 2 cut(s) 1427, 2678
BspT107I GGYRCC 4 cut(s) 330, 529, 619, 1855
BspTNI GGTCTC 3 cut(s) 1964, 3222, 3909
BsrDI GCAATG 5 cut(s) 262, 2817, 3077, 3504, 3764
BsrFI RCCGGY 3 cut(s) 28, 3301, 3988
BsrI ACTGG 1 cut(s) 601
BssAI RCCGGY 3 cut(s) 28, 3301, 3988
BssECI CCNNGG 8 cut(s) 291, 525, 686, 1093, 1094, 1224, 1457, 2662
BssT1I CCWWGG 2 cut(s) 525, 1224
Bst2UI CCWGG 7 cut(s) 89, 572, 688, 1095, 1458, 1797, 2457
Bst6I CTCTTC 5 cut(s) 42, 1734, 2178, 2841, 3528
BstBAI YACGTR 3 cut(s) 68, 327, 2624
BstBI TTCGAA 2 cut(s) 1427, 2678
BstC8I GCNNGC 8 cut(s) 474, 1187, 1779, 1783, 2259, 2449, 3228, 3915
BstDSI CCRYGG 2 cut(s) 525, 2662
BstENI CCTNNNNNAGG 1 cut(s) 4134
BstFNI CGCG 5 cut(s) 211, 3226, 3311, 3913, 3998
BstH2I RGCGCY 1 cut(s) 4159
BstHHI GCGC 2 cut(s) 213, 4158
BstMAI GTCTC 7 cut(s) 587, 981, 1964, 2123, 2344, 3222, 3909
BstMCI CGRYCG 3 cut(s) 29, 3367, 4054
BstMWI GCNNNNNNNGC 9 cut(s) 1640, 1774, 2147, 2210, 2216, 2267, 2401, 2618, 4153
BstNI CCWGG 7 cut(s) 89, 572, 688, 1095, 1458, 1797, 2457
BstNSI RCATGY 3 cut(s) 666, 994, 1189
BstSFI CTRYAG 7 cut(s) 424, 535, 1641, 2964, 3036, 3651, 3723
BstSLI GKGCMC 1 cut(s) 680
BstUI CGCG 5 cut(s) 211, 3226, 3311, 3913, 3998
BstV2I GAAGAC 1 cut(s) 1573
Bsu36I CCTNAGG 3 cut(s) 276, 2187, 2418
BsuI GTATCC 1 cut(s) 2502
BsuRI GGCC 7 cut(s) 32, 1223, 1785, 2141, 2707, 2843, 3530
BtgI CCRYGG 2 cut(s) 525, 2662
BtsI GCAGTG 1 cut(s) 1236
BtsIMutI CAGTG 7 cut(s) 167, 1236, 2025, 2105, 2254, 3385, 4072
BtuMI TCGCGA 4 cut(s) 3226, 3311, 3913, 3998
BveI ACCTGC 6 cut(s) 1249, 3250, 3337, 3937, 4024, 4115
Cac8I GCNNGC 8 cut(s) 474, 1187, 1779, 1783, 2259, 2449, 3228, 3915
CaiI CAGNNNCTG 4 cut(s) 88, 713, 1565, 4130
CciI TCATGA 1 cut(s) 943
CfoI GCGC 2 cut(s) 213, 4158
Cfr10I RCCGGY 3 cut(s) 28, 3301, 3988
Cfr13I GGNCC 5 cut(s) 637, 1221, 1783, 2705, 4127
CseI GACGC 1 cut(s) 1957
CsiI ACCWGGT 1 cut(s) 570
Csp6I GTAC 4 cut(s) 331, 763, 2349, 2694
CspCI CAANNNNNGTGG 4 cut(s) 444, 479, 2605, 2640
CviAII CATG 9 cut(s) 526, 663, 944, 991, 1186, 2353, 2497, 2881, 3568
CviQI GTAC 4 cut(s) 331, 763, 2349, 2694
DraI TTTAAA 2 cut(s) 2605, 3838
DraIII CACNNNGTG 2 cut(s) 1598, 2627
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 5 cut(s) 42, 1734, 2178, 2841, 3528
EarI CTCTTC 5 cut(s) 42, 1734, 2178, 2841, 3528
Ecl136II GAGCTC 1 cut(s) 192
Eco130I CCWWGG 2 cut(s) 525, 1224
Eco24I GRGCYC 1 cut(s) 194
Eco31I GGTCTC 3 cut(s) 1964, 3222, 3909
Eco32I GATATC 1 cut(s) 2005
Eco47I GGWCC 2 cut(s) 637, 4127
Eco53kI GAGCTC 1 cut(s) 192
Eco57I CTGAAG 1 cut(s) 1880
Eco72I CACGTG 1 cut(s) 2624
Eco81I CCTNAGG 3 cut(s) 276, 2187, 2418
EcoICRI GAGCTC 1 cut(s) 192
EcoNI CCTNNNNNAGG 1 cut(s) 4134
EcoO109I RGGNCCY 1 cut(s) 4127
EcoRI GAATTC 2 cut(s) 3103, 3790
EcoRII CCWGG 7 cut(s) 87, 570, 686, 1093, 1456, 1795, 2455
EcoRV GATATC 1 cut(s) 2005
EcoT14I CCWWGG 2 cut(s) 525, 1224
EcoT22I ATGCAT 1 cut(s) 880
EcoT38I GRGCYC 1 cut(s) 194
ErhI CCWWGG 2 cut(s) 525, 1224
FaeI CATG 9 cut(s) 529, 666, 947, 994, 1189, 2356, 2500, 2884, 3571
FalI AAGNNNNNCTT 2 cut(s) 1565, 1597
FaqI GGGAC 4 cut(s) 133, 308, 1076, 1499
FatI CATG 9 cut(s) 525, 662, 943, 990, 1185, 2352, 2496, 2880, 3567
FauI CCCGC 4 cut(s) 423, 1774, 3420, 4107
FauNDI CATATG 2 cut(s) 642, 1299
FbaI TGATCA 1 cut(s) 2251
FblI GTMKAC 1 cut(s) 2729
FriOI GRGCYC 1 cut(s) 194
FspBI CTAG 4 cut(s) 1596, 2054, 2258, 2430
GlaI GCGC 2 cut(s) 212, 4157
GsaI CCCAGC 2 cut(s) 2129, 2408
GsuI CTGGAG 3 cut(s) 62, 110, 2733
HaeII RGCGCY 1 cut(s) 4159
HaeIII GGCC 7 cut(s) 32, 1223, 1785, 2141, 2707, 2843, 3530
HapII CCGG 8 cut(s) 29, 195, 291, 339, 1163, 3302, 3989, 4159
HgaI GACGC 1 cut(s) 1957
HhaI GCGC 2 cut(s) 213, 4158
Hin1II CATG 9 cut(s) 529, 666, 947, 994, 1189, 2356, 2500, 2884, 3571
Hin6I GCGC 2 cut(s) 211, 4156
HinP1I GCGC 2 cut(s) 211, 4156
HincII GTYRAC 1 cut(s) 2730
HindII GTYRAC 1 cut(s) 2730
HpaII CCGG 8 cut(s) 29, 195, 291, 339, 1163, 3302, 3989, 4159
HpyAV CCTTC 5 cut(s) 441, 1008, 1530, 1570, 1904
HpyF10VI GCNNNNNNNGC 9 cut(s) 1640, 1774, 2147, 2210, 2216, 2267, 2401, 2618, 4153
Hsp92II CATG 9 cut(s) 529, 666, 947, 994, 1189, 2356, 2500, 2884, 3571
HspAI GCGC 2 cut(s) 211, 4156
KpnI GGTACC 1 cut(s) 334
Ksp22I TGATCA 1 cut(s) 2251
LmnI GCTCC 7 cut(s) 197, 1436, 2752, 3184, 3388, 3871, 4075
MabI ACCWGGT 1 cut(s) 570
MaeI CTAG 4 cut(s) 1596, 2054, 2258, 2430
MfeI CAATTG 1 cut(s) 1400
MhlI GDGCHC 5 cut(s) 194, 680, 1312, 3385, 4072
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 2 cut(s) 756, 1664
Mph1103I ATGCAT 1 cut(s) 880
MroXI GAANNNNTTC 2 cut(s) 1580, 2318
MseI TTAA 8 cut(s) 135, 1365, 2132, 2604, 3335, 3837, 4022, 4174
MslI CAYNNNNRTG 4 cut(s) 617, 929, 2108, 2357
MspA1I CMGCKG 3 cut(s) 418, 1562, 1835
MspI CCGG 8 cut(s) 29, 195, 291, 339, 1163, 3302, 3989, 4159
MunI CAATTG 1 cut(s) 1400
Mva1269I GAATGC 3 cut(s) 1762, 1878, 2449
MvaI CCWGG 7 cut(s) 89, 572, 688, 1095, 1458, 1797, 2457
MvnI CGCG 5 cut(s) 211, 3226, 3311, 3913, 3998
MwoI GCNNNNNNNGC 9 cut(s) 1640, 1774, 2147, 2210, 2216, 2267, 2401, 2618, 4153
NciI CCSGG 4 cut(s) 196, 292, 339, 1164
NcoI CCATGG 1 cut(s) 525
NdeI CATATG 2 cut(s) 642, 1299
NheI GCTAGC 1 cut(s) 2257
NlaIII CATG 9 cut(s) 529, 666, 947, 994, 1189, 2356, 2500, 2884, 3571
NmuCI GTSAC 8 cut(s) 68, 280, 380, 1645, 3154, 3269, 3841, 3956
NruI TCGCGA 4 cut(s) 3226, 3311, 3913, 3998
NsiI ATGCAT 1 cut(s) 880
NspI RCATGY 3 cut(s) 666, 994, 1189
NspV TTCGAA 2 cut(s) 1427, 2678
OliI CACNNNNGTG 1 cut(s) 617
PaeI GCATGC 1 cut(s) 1189
PagI TCATGA 1 cut(s) 943
PasI CCCWGGG 1 cut(s) 1094
PctI GAATGC 3 cut(s) 1762, 1878, 2449
PdmI GAANNNNTTC 2 cut(s) 1580, 2318
PflMI CCANNNNNTGG 1 cut(s) 1598
PfoI TCCNGGA 1 cut(s) 87
PleI GAGTC 1 cut(s) 100
PmaCI CACGTG 1 cut(s) 2624
PmlI CACGTG 1 cut(s) 2624
PpsI GAGTC 1 cut(s) 100
Ppu21I YACGTR 3 cut(s) 68, 327, 2624
PpuMI RGGWCCY 1 cut(s) 4127
PsiI TTATAA 1 cut(s) 1673
Psp124BI GAGCTC 1 cut(s) 194
Psp5II RGGWCCY 1 cut(s) 4127
Psp6I CCWGG 7 cut(s) 87, 570, 686, 1093, 1456, 1795, 2455
PspCI CACGTG 1 cut(s) 2624
PspFI CCCAGC 2 cut(s) 2125, 2404
PspGI CCWGG 7 cut(s) 87, 570, 686, 1093, 1456, 1795, 2455
PspPI GGNCC 5 cut(s) 637, 1221, 1783, 2705, 4127
PspPPI RGGWCCY 1 cut(s) 4127
PstI CTGCAG 4 cut(s) 428, 1645, 2968, 3655
PstNI CAGNNNCTG 4 cut(s) 88, 713, 1565, 4130
PvuII CAGCTG 2 cut(s) 1562, 1835
RruI TCGCGA 4 cut(s) 3226, 3311, 3913, 3998
RsaI GTAC 4 cut(s) 332, 764, 2350, 2695
RsaNI GTAC 4 cut(s) 331, 763, 2349, 2694
RseI CAYNNNNRTG 4 cut(s) 617, 929, 2108, 2357
SacI GAGCTC 1 cut(s) 194
SalI GTCGAC 1 cut(s) 2728
SaqAI TTAA 8 cut(s) 135, 1365, 2132, 2604, 3335, 3837, 4022, 4174
Sau96I GGNCC 5 cut(s) 637, 1221, 1783, 2705, 4127
SchI GAGTC 1 cut(s) 101
SduI GDGCHC 5 cut(s) 194, 680, 1312, 3385, 4072
SexAI ACCWGGT 1 cut(s) 570
SfcI CTRYAG 7 cut(s) 424, 535, 1641, 2964, 3036, 3651, 3723
SfuI TTCGAA 2 cut(s) 1427, 2678
SinI GGWCC 2 cut(s) 637, 4127
SmiMI CAYNNNNRTG 4 cut(s) 617, 929, 2108, 2357
SmlI CTYRAG 5 cut(s) 1147, 2947, 3119, 3634, 3806
SmoI CTYRAG 5 cut(s) 1147, 2947, 3119, 3634, 3806
SphI GCATGC 1 cut(s) 1189
SspI AATATT 4 cut(s) 1064, 1361, 1378, 1630
SspMI CTAG 4 cut(s) 1596, 2054, 2258, 2430
SstI GAGCTC 1 cut(s) 194
StyI CCWWGG 2 cut(s) 525, 1224
TaqII GACCGA 2 cut(s) 3381, 4068
TatI WGTACW 1 cut(s) 2693
TauI GCSGC 3 cut(s) 168, 3418, 4105
Tru1I TTAA 8 cut(s) 135, 1365, 2132, 2604, 3335, 3837, 4022, 4174
Tru9I TTAA 8 cut(s) 135, 1365, 2132, 2604, 3335, 3837, 4022, 4174
TscAI CASTG 7 cut(s) 167, 1243, 2025, 2112, 2254, 3385, 4072
TseFI GTSAC 8 cut(s) 68, 280, 380, 1645, 3154, 3269, 3841, 3956
Tsp45I GTSAC 8 cut(s) 68, 280, 380, 1645, 3154, 3269, 3841, 3956
TspGWI ACGGA 2 cut(s) 359, 1076
TspRI CASTG 7 cut(s) 167, 1243, 2025, 2112, 2254, 3385, 4072
Van91I CCANNNNNTGG 1 cut(s) 1598
VneI GTGCAC 1 cut(s) 676
VpaK11BI GGWCC 2 cut(s) 637, 4127
XagI CCTNNNNNAGG 1 cut(s) 4134
XapI RAATTY 6 cut(s) 939, 1336, 1413, 2556, 3103, 3790
XbaI TCTAGA 1 cut(s) 2429
XceI RCATGY 3 cut(s) 666, 994, 1189
XmiI GTMKAC 1 cut(s) 2729
XmnI GAANNNNTTC 2 cut(s) 1580, 2318
XspI CTAG 4 cut(s) 1596, 2054, 2258, 2430
Zsp2I ATGCAT 1 cut(s) 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.