Rorug02G0432900

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0015155
Physical Location & Seq
Reverse (-)
55435289 .. 55437417
2129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0432900.1

Sequence Viewer

Length: 243 bp
ATGCGGACGAAAAAGAAAGAGATAGATGTGGAGGAAGAAGTTACTACTGCAGTTTCAACTGTTGGCCAAACAACTCCTACTACTGAAAAACCTCTACCCCTGCCAACCATCACAGAGCCAGCTGTGAAATTGCGGGAACCAATCTCAGAAGATCAACAACTCGAAGTTTTTAAGTGGATTCTGGAAGAGAGAAGAAAGGTTAGACCAAAGGATCCTGAAGAAAAGAAGCGCATTGATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007292 GO:0007346 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0009994 GO:0010033 GO:0010467 GO:0012505 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019899 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0032392 GO:0032501 GO:0032502 GO:0032504 GO:0032508 GO:0032991 GO:0034097 GO:0034458 GO:0034612 GO:0034641 GO:0035770 GO:0035821 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043900 GO:0043902 GO:0043903 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044788 GO:0044794 GO:0044827 GO:0044829 GO:0045069 GO:0045070 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0048232 GO:0048468 GO:0048477 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048524 GO:0048599 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050792 GO:0050794 GO:0050896 GO:0051276 GO:0051445 GO:0051446 GO:0051702 GO:0051704 GO:0051726 GO:0051728 GO:0051729 GO:0051817 GO:0051851 GO:0060184 GO:0065007 GO:0070035 GO:0070063 GO:0070555 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363 GO:1903900 GO:1903902 GO:1990247 GO:1990904 GO:2000241 GO:2000243
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind R3H

Protein Analysis

80

Amino Acids

9.34

Weight (kDa)

5.33

Isoelectric Point (pI)

64.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30800 AT2G30800
fragaria_vesca FvH4_6g38870
malus_domestica MD09G1146500.v1.1
prunus_persica Prupe.3G179000_v2.0.a1
pyrus_communis pycom09g06680
rosa_chinensis RchiOBHm_Chr2g0152461
rosa_laevigata RLG00000020635
rosa_multiflora Rmu_sc0005366.1_g000012
rosa_roxburghii Rroxscaffold_2G00095700
rosa_rugosa Rorug02G0432900
rosa_samantha Rh2AG494700 Rh2BG506900 Rh2CG480900 Rh2DG518100
rosa_wichuraiana Rw2G040710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 4, 133
AclWI GGATC 2 cut(s) 206, 219
AcoI YGGCCR 1 cut(s) 64
AcuI CTGAAG 1 cut(s) 237
AgsI TTSAA 1 cut(s) 57
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
AlwI GGATC 2 cut(s) 206, 219
AoxI GGCC 1 cut(s) 64
AspLEI GCGC 1 cut(s) 231
BalI TGGCCA 1 cut(s) 66
BamHI GGATCC 1 cut(s) 211
BccI CCATC 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 48
BmiI GGNNCC 2 cut(s) 138, 213
BseMII CTCAG 1 cut(s) 159
BshFI GGCC 1 cut(s) 66
BsnI GGCC 1 cut(s) 66
Bsp143I GATC 2 cut(s) 151, 211
BspACI CCGC 2 cut(s) 4, 133
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 1 cut(s) 158
BspLI GGNNCC 2 cut(s) 138, 213
BspMAI CTGCAG 1 cut(s) 52
BspPI GGATC 2 cut(s) 206, 219
BssMI GATC 2 cut(s) 151, 211
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 145
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 2 cut(s) 154, 214
BstMBI GATC 2 cut(s) 151, 211
BstSFI CTRYAG 1 cut(s) 48
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BsuRI GGCC 1 cut(s) 66
Cac8I GCNNGC 1 cut(s) 120
CfoI GCGC 1 cut(s) 231
CviJI RGCY 3 cut(s) 66, 118, 122
CviKI_1 RGCY 3 cut(s) 66, 118, 122
DdeI CTNAG 1 cut(s) 145
DpnI GATC 2 cut(s) 153, 213
DpnII GATC 2 cut(s) 151, 211
EaeI YGGCCR 1 cut(s) 64
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco57I CTGAAG 1 cut(s) 237
FauI CCCGC 1 cut(s) 126
GlaI GCGC 1 cut(s) 230
HaeIII GGCC 1 cut(s) 66
HhaI GCGC 1 cut(s) 231
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HinfI GANTC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 2 cut(s) 182, 215
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 145
HspAI GCGC 1 cut(s) 229
Kzo9I GATC 2 cut(s) 151, 211
LpnPI CCDG 4 cut(s) 113, 132, 167, 228
MaeIII GTNAC 1 cut(s) 40
MalI GATC 2 cut(s) 153, 213
MboI GATC 2 cut(s) 151, 211
MboII GAAGA 5 cut(s) 47, 161, 197, 204, 230
MflI RGATCY 1 cut(s) 211
MlsI TGGCCA 1 cut(s) 66
MluCI AATT 1 cut(s) 128
MluNI TGGCCA 1 cut(s) 66
MnlI CCTC 2 cut(s) 25, 102
Mox20I TGGCCA 1 cut(s) 66
MscI TGGCCA 1 cut(s) 66
MseI TTAA 1 cut(s) 171
Msp20I TGGCCA 1 cut(s) 66
MspA1I CMGCKG 1 cut(s) 122
NdeII GATC 2 cut(s) 151, 211
NlaIV GGNNCC 2 cut(s) 138, 213
PfeI GAWTC 1 cut(s) 178
PspN4I GGNNCC 2 cut(s) 138, 213
PstI CTGCAG 1 cut(s) 52
PsuI RGATCY 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 122
SaqAI TTAA 1 cut(s) 171
Sau3AI GATC 2 cut(s) 151, 211
SetI ASST 3 cut(s) 94, 124, 201
SfcI CTRYAG 1 cut(s) 48
SgeI CNNG 6 cut(s) 112, 131, 146, 173, 194, 227
Sse9I AATT 1 cut(s) 128
SsiI CCGC 2 cut(s) 4, 133
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 162
TasI AATT 1 cut(s) 128
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.