Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005702.1

Orthogroup ID

OG0020218

Physical Location & Seq

Genomic Coordinates Reverse (-)

518 .. 3090

Gene Structure 2573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgctaaattttgccaggggcagacgagagtcacggtccaatagacccctgtcgcttggaggcatggattacccagatcccaagaggaagaacaattttgtaggaaaaattattttggctgctgcccttacggcgctatgcattatcatgctgaaacaatccccatcgttcaatcctactagcacgttctcccgtcgtgaatcaggagtaacccatgtcctagtaacgggaggtgctggatatattggttcacatgctgcattacgacttctaaaggattcataccgtgtaactattgtggataacctctcacggggaaacctaggtgcagtcaaggttctccaacaactatttcctgagcctgggaggctgcaatttatttatgctgacttgggggatccaaaatccgttaacaaaatattttcagagaatgcatttgatgctgtgatgcattttgcagctgtagcatatgtcggggaaagcacccttgatccacttaagtattaccacaatattacatcaaataccttggtagtagtagaggcgatggccaaacatcgtgtgaggacattaatatattctagcacatgtgcaacatatggagaaccggaaaagatgcctattactgaagaaactacacaggtcccaattaatccatatggaaaagctaagaagatggcagaggatattatcctggatttctctaagaattcaaacatggcagtcatgatcctgaggttggtgctttattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009856 GO:0009987 GO:0010154 GO:0012505 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019322 GO:0019566 GO:0019567 GO:0022414 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044238 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046364 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050373 GO:0051704 GO:0061458 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

250

Amino Acids

27.68

Weight (kDa)

9.52

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	72 - 246	1.9e-12	RmlD substrate binding domain
Epimerase	PF01370	73 - 247	1.3e-38	NAD dependent epimerase/dehydratase family
Polysacc_synt_2	PF02719	73 - 241	5.8e-10	Polysaccharide biosynthesis protein
GDP_Man_Dehyd	PF16363	74 - 247	2.3e-39	GDP-mannose 4,6 dehydratase
3Beta_HSD	PF01073	74 - 233	6.5e-14	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_10	PF13460	77 - 246	8.7e-08	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30620
pyrus_communis	pycom17g11960 pycom17g11970
rosa_multiflora	Rmu_sc0005702.1_g000001 Rmu_sc0022928.1_g000001
rosa_wichuraiana	Rw2G041570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	71, 392, 405, 485, 724
AcoI	YGGCCR	1 cut(s)	549
AcsI	RAATTY	2 cut(s)	7, 709
AcuI	CTGAAG	1 cut(s)	648
AfiI	CCNNNNNNNGG	4 cut(s)	226, 313, 362, 739
AflII	CTTAAG	1 cut(s)	497
AflIII	ACRYGT	1 cut(s)	587
AgsI	TTSAA	2 cut(s)	172, 714
AjnI	CCWGG	3 cut(s)	14, 361, 693
AjuI	GAANNNNNNNTTGG	2 cut(s)	336, 368
AluBI	AGCT	2 cut(s)	461, 668
AluI	AGCT	2 cut(s)	461, 668
AlwI	GGATC	5 cut(s)	71, 392, 405, 485, 724
AoxI	GGCC	1 cut(s)	549
ApeKI	GCWGC	5 cut(s)	119, 122, 257, 370, 458
ApoI	RAATTY	2 cut(s)	7, 709
AseI	ATTAAT	2 cut(s)	572, 651
AspA2I	CCTAGG	1 cut(s)	322
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	2 cut(s)	36, 643
AvaII	GGWCC	2 cut(s)	36, 643
AvrII	CCTAGG	1 cut(s)	322
AxyI	CCTNAGG	1 cut(s)	734
BalI	TGGCCA	1 cut(s)	551
BamHI	GGATCC	1 cut(s)	397
BbvI	GCAGC	5 cut(s)	106, 109, 244, 357, 470
BccI	CCATC	3 cut(s)	172, 541, 670
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	3 cut(s)	16, 363, 695
BfaI	CTAG	4 cut(s)	180, 221, 323, 582
BfmI	CTRYAG	1 cut(s)	462
BfoI	RGCGCY	1 cut(s)	137
BfrI	CTTAAG	1 cut(s)	497
BglI	GCCNNNNNGGC	2 cut(s)	131, 367
BisI	GCNGC	5 cut(s)	120, 123, 258, 371, 459
BlnI	CCTAGG	1 cut(s)	322
BlsI	GCNGC	5 cut(s)	121, 124, 259, 372, 460
Bme1390I	CCNGG	3 cut(s)	16, 363, 695
Bme18I	GGWCC	2 cut(s)	36, 643
BmgT120I	GGNCC	2 cut(s)	36, 643
BmiI	GGNNCC	2 cut(s)	399, 645
BmrFI	CCNGG	3 cut(s)	16, 363, 695
BmsI	GCATC	3 cut(s)	430, 438, 606
BoxI	GACNNNNGTC	2 cut(s)	28, 49
Bpu10I	CCTNAGC	1 cut(s)	357
BsaJI	CCNNGG	4 cut(s)	15, 322, 362, 528
BsaWI	WCCGGW	1 cut(s)	607
Bsc4I	CCNNNNNNNGG	4 cut(s)	226, 313, 362, 739
Bse21I	CCTNAGG	1 cut(s)	734
BseBI	CCWGG	3 cut(s)	16, 363, 695
BseDI	CCNNGG	4 cut(s)	15, 322, 362, 528
BseLI	CCNNNNNNNGG	4 cut(s)	226, 313, 362, 739
BseMII	CTCAG	2 cut(s)	348, 725
BseXI	GCAGC	5 cut(s)	106, 109, 244, 357, 470
BsgI	GTGCAG	1 cut(s)	348
BshFI	GGCC	1 cut(s)	551
BsiSI	CCGG	1 cut(s)	608
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	4 cut(s)	226, 313, 362, 739
BsmFI	GGGAC	1 cut(s)	629
BsmI	GAATGC	1 cut(s)	436
BsnI	GGCC	1 cut(s)	551
Bsp143I	GATC	4 cut(s)	76, 397, 490, 729
BspANI	GGCC	1 cut(s)	551
BspCNI	CTCAG	2 cut(s)	349, 726
BspHI	TCATGA	1 cut(s)	726
BspLI	GGNNCC	2 cut(s)	399, 645
BspPI	GGATC	5 cut(s)	71, 392, 405, 485, 724
BspTI	CTTAAG	1 cut(s)	497
BssECI	CCNNGG	4 cut(s)	15, 322, 362, 528
BssMI	GATC	4 cut(s)	76, 397, 490, 729
BssT1I	CCWWGG	2 cut(s)	322, 528
Bst2UI	CCWGG	3 cut(s)	16, 363, 695
Bst4CI	ACNGT	2 cut(s)	36, 287
BstAFI	CTTAAG	1 cut(s)	497
BstAPI	GCANNNNNTGC	1 cut(s)	440
BstDEI	CTNAG	4 cut(s)	357, 669, 705, 734
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	4 cut(s)	79, 400, 493, 732
BstMBI	GATC	4 cut(s)	76, 397, 490, 729
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 367, 440, 464
BstNI	CCWGG	3 cut(s)	16, 363, 695
BstNSI	RCATGY	2 cut(s)	257, 591
BstPAI	GACNNNNGTC	2 cut(s)	28, 49
BstSCI	CCNGG	3 cut(s)	14, 361, 693
BstSFI	CTRYAG	1 cut(s)	462
BstV1I	GCAGC	5 cut(s)	106, 109, 244, 357, 470
BstX2I	RGATCY	2 cut(s)	76, 397
BstYI	RGATCY	2 cut(s)	76, 397
Bsu36I	CCTNAGG	1 cut(s)	734
BsuRI	GGCC	1 cut(s)	551
BtgZI	GCGATG	1 cut(s)	560
CciI	TCATGA	1 cut(s)	726
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	2 cut(s)	36, 643
CviAII	CATG	7 cut(s)	64, 148, 215, 254, 588, 718, 727
CviJI	RGCY	6 cut(s)	119, 361, 370, 461, 551, 668
CviKI_1	RGCY	6 cut(s)	119, 361, 370, 461, 551, 668
DdeI	CTNAG	4 cut(s)	357, 669, 705, 734
DpnI	GATC	4 cut(s)	78, 399, 492, 731
DpnII	GATC	4 cut(s)	76, 397, 490, 729
EaeI	YGGCCR	1 cut(s)	549
Eco130I	CCWWGG	2 cut(s)	322, 528
Eco47I	GGWCC	2 cut(s)	36, 643
Eco57I	CTGAAG	1 cut(s)	648
Eco81I	CCTNAGG	1 cut(s)	734
EcoO109I	RGGNCCY	1 cut(s)	643
EcoRI	GAATTC	1 cut(s)	709
EcoRII	CCWGG	3 cut(s)	14, 361, 693
EcoT14I	CCWWGG	2 cut(s)	322, 528
EcoT22I	ATGCAT	3 cut(s)	143, 436, 453
ErhI	CCWWGG	2 cut(s)	322, 528
FaeI	CATG	7 cut(s)	67, 151, 218, 257, 591, 721, 730
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	7 cut(s)	63, 147, 214, 253, 587, 717, 726
FauNDI	CATATG	3 cut(s)	469, 598, 658
Fnu4HI	GCNGC	5 cut(s)	120, 123, 258, 371, 459
Fsp4HI	GCNGC	5 cut(s)	120, 123, 258, 371, 459
FspBI	CTAG	4 cut(s)	180, 221, 323, 582
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	5 cut(s)	120, 123, 258, 371, 459
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	551
HapII	CCGG	1 cut(s)	608
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	7 cut(s)	67, 151, 218, 257, 591, 721, 730
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	3 cut(s)	29, 200, 278
HpaI	GTTAAC	1 cut(s)	412
HpaII	CCGG	1 cut(s)	608
Hpy166II	GTNNAC	2 cut(s)	251, 412
Hpy188I	TCNGA	1 cut(s)	427
Hpy188III	TCNNGA	5 cut(s)	197, 204, 356, 727, 733
Hpy8I	GTNNAC	2 cut(s)	251, 412
Hpy99I	CGWCG	1 cut(s)	198
HpyCH4III	ACNGT	2 cut(s)	36, 287
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	8 cut(s)	141, 260, 329, 373, 434, 451, 458, 593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 367, 440, 464
HpyF3I	CTNAG	4 cut(s)	357, 669, 705, 734
HpySE526I	ACGT	1 cut(s)	185
Hsp92II	CATG	7 cut(s)	67, 151, 218, 257, 591, 721, 730
HspAI	GCGC	1 cut(s)	134
KspAI	GTTAAC	1 cut(s)	412
Kzo9I	GATC	4 cut(s)	76, 397, 490, 729
Lsp1109I	GCAGC	5 cut(s)	106, 109, 244, 357, 470
LweI	GCATC	3 cut(s)	430, 438, 606
MaeI	CTAG	4 cut(s)	180, 221, 323, 582
MaeII	ACGT	1 cut(s)	185
MaeIII	GTNAC	4 cut(s)	30, 208, 223, 289
MalI	GATC	4 cut(s)	78, 399, 492, 731
MboI	GATC	4 cut(s)	76, 397, 490, 729
MboII	GAAGA	3 cut(s)	100, 641, 685
MflI	RGATCY	2 cut(s)	76, 397
MlsI	TGGCCA	1 cut(s)	551
MluCI	AATT	6 cut(s)	7, 94, 108, 374, 648, 709
MluNI	TGGCCA	1 cut(s)	551
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	367
MnlI	CCTC	9 cut(s)	53, 78, 224, 317, 360, 535, 558, 676, 729
Mox20I	TGGCCA	1 cut(s)	551
Mph1103I	ATGCAT	3 cut(s)	143, 436, 453
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	4 cut(s)	411, 498, 572, 651
MslI	CAYNNNNRTG	1 cut(s)	146
Msp20I	TGGCCA	1 cut(s)	551
MspA1I	CMGCKG	1 cut(s)	461
MspCI	CTTAAG	1 cut(s)	497
MspI	CCGG	1 cut(s)	608
MspR9I	CCNGG	3 cut(s)	16, 363, 695
Mva1269I	GAATGC	1 cut(s)	436
MvaI	CCWGG	3 cut(s)	16, 363, 695
MwoI	GCNNNNNNNGC	4 cut(s)	131, 367, 440, 464
NdeI	CATATG	3 cut(s)	469, 598, 658
NdeII	GATC	4 cut(s)	76, 397, 490, 729
NlaIII	CATG	7 cut(s)	67, 151, 218, 257, 591, 721, 730
NlaIV	GGNNCC	2 cut(s)	399, 645
NmuCI	GTSAC	1 cut(s)	30
NsiI	ATGCAT	3 cut(s)	143, 436, 453
NspI	RCATGY	2 cut(s)	257, 591
PagI	TCATGA	1 cut(s)	726
PciI	ACATGT	1 cut(s)	587
PctI	GAATGC	1 cut(s)	436
PfeI	GAWTC	2 cut(s)	200, 278
PfoI	TCCNGGA	1 cut(s)	693
PkrI	GCNGC	5 cut(s)	121, 124, 259, 372, 460
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PpuMI	RGGWCCY	1 cut(s)	643
PscI	ACATGT	1 cut(s)	587
PshAI	GACNNNNGTC	2 cut(s)	28, 49
PshBI	ATTAAT	2 cut(s)	572, 651
Psp5II	RGGWCCY	1 cut(s)	643
Psp6I	CCWGG	3 cut(s)	14, 361, 693
PspGI	CCWGG	3 cut(s)	14, 361, 693
PspN4I	GGNNCC	2 cut(s)	399, 645
PspPI	GGNCC	2 cut(s)	36, 643
PspPPI	RGGWCCY	1 cut(s)	643
PsuI	RGATCY	2 cut(s)	76, 397
PvuII	CAGCTG	1 cut(s)	461
RseI	CAYNNNNRTG	1 cut(s)	146
SaqAI	TTAA	4 cut(s)	411, 498, 572, 651
SatI	GCNGC	5 cut(s)	120, 123, 258, 371, 459
Sau3AI	GATC	4 cut(s)	76, 397, 490, 729
Sau96I	GGNCC	2 cut(s)	36, 643
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	3 cut(s)	16, 363, 695
SfaNI	GCATC	3 cut(s)	430, 438, 606
SfcI	CTRYAG	1 cut(s)	462
SinI	GGWCC	2 cut(s)	36, 643
SmiMI	CAYNNNNRTG	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	6 cut(s)	7, 94, 108, 374, 648, 709
SspI	AATATT	2 cut(s)	420, 514
SspMI	CTAG	4 cut(s)	180, 221, 323, 582
StyD4I	CCNGG	3 cut(s)	14, 361, 693
StyI	CCWWGG	2 cut(s)	322, 528
TaaI	ACNGT	2 cut(s)	36, 287
TaiI	ACGT	1 cut(s)	188
TasI	AATT	6 cut(s)	7, 94, 108, 374, 648, 709
TfiI	GAWTC	2 cut(s)	200, 278
Tru1I	TTAA	4 cut(s)	411, 498, 572, 651
Tru9I	TTAA	4 cut(s)	411, 498, 572, 651
TseFI	GTSAC	1 cut(s)	30
TseI	GCWGC	5 cut(s)	119, 122, 257, 370, 458
Tsp45I	GTSAC	1 cut(s)	30
TspDTI	ATGAA	1 cut(s)	270
TspGWI	ACGGA	1 cut(s)	397
Vha464I	CTTAAG	1 cut(s)	497
VpaK11BI	GGWCC	2 cut(s)	36, 643
VspI	ATTAAT	2 cut(s)	572, 651
XapI	RAATTY	2 cut(s)	7, 709
XceI	RCATGY	2 cut(s)	257, 591
XmaJI	CCTAGG	1 cut(s)	322
XspI	CTAG	4 cut(s)	180, 221, 323, 582
Zsp2I	ATGCAT	3 cut(s)	143, 436, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.