Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005745.1

Orthogroup ID

OG0013344

Physical Location & Seq

Genomic Coordinates Forward (+)

113919 .. 115516

Gene Structure 1598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atggacgatgacctgtccgcccccttccgccgatcctcgagtcggaatcgtaaggtcgcgtcgaaaatggctgctgcccttatgagcactgataaccgcacccaggagacacctttacctctatctacacccgccatggacgatgacctgtccgcccccttccgccgatcctcgagtcggaatcgtaaggtcgcgtcgaaaatggctgctgcccttatgagcactgataaccgcacccaggctgcccttgctaggcttgaagctttggaaaacgacaatgctgggttggaaactgtggaggttaatgacgacgatgaagcttctcttgatgatgaggatcaaggatatatacaaaagaagcagcctaagggcaccaagcgtaaaacccggcaggcaaaagctcttgaggccaggaaggcacccagaacattccttgagcttttacatgaggcaaatcttgaatctttgccacctcatgtcccctcctatctgaaagcagcagtgggacctccaagctctacctcccgccgccatttctgcactgtttgtggttcggctgccaactatacatgtgtgaggtgtggtatgcgcttctgttcgtgtcgttgccagaatatacacaatgatactcgttgtcagaaatttgttgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009909 GO:0009987 GO:0016043 GO:0019222 GO:0019899 GO:0031056 GO:0031063 GO:0031323 GO:0031399 GO:0031491 GO:0031974 GO:0031981 GO:0032268 GO:0032991 GO:0033043 GO:0033044 GO:0034728 GO:0040008 GO:0042742 GO:0042802 GO:0042826 GO:0043044 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043486 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0048580 GO:0048638 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0051276 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0070013 GO:0070603 GO:0071824 GO:0071840 GO:0080090 GO:0090311 GO:0097346 GO:0098542 GO:1902275 GO:1902494 GO:1904949 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-HIT

Protein Analysis

217

Amino Acids

24.0

Weight (kDa)

9.07

Isoelectric Point (pI)

58.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-HIT	PF04438	176 - 204	1.2e-09	HIT zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37055
fragaria_vesca	FvH4_3g39740
malus_domestica	MD03G1056300.v1.1 MD11G1057500.v1.1
prunus_persica	Prupe.6G048500_v2.0.a1 Prupe.6G048500_v2.0.a1
pyrus_communis	pycom03g04460
rosa_chinensis	RchiOBHm_Chr5g0071621
rosa_laevigata	RLG00000036233
rosa_multiflora	Rmu_co7965106.1_g000001 Rmu_sc0005745.1_g000030
rosa_roxburghii	Rroxscaffold_1G00009560
rosa_rugosa	Rorug05G0413600
rosa_samantha	Rh5AG469600 Rh5BG489000 Rh5CG512900 Rh5DG499600
rosa_wichuraiana	Rw5G043630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	371, 418
AccII	CGCG	2 cut(s)	59, 194
AciI	CCGC	9 cut(s)	18, 28, 97, 132, 153, 163, 232, 526, 529
AclWI	GGATC	3 cut(s)	27, 162, 345
AcsI	RAATTY	1 cut(s)	641
AfiI	CCNNNNNNNGG	5 cut(s)	42, 103, 177, 238, 252
AflIII	ACRYGT	1 cut(s)	569
AgsI	TTSAA	2 cut(s)	260, 461
AjnI	CCWGG	3 cut(s)	102, 237, 410
AluBI	AGCT	5 cut(s)	263, 320, 401, 439, 516
AluI	AGCT	5 cut(s)	263, 320, 401, 439, 516
Alw21I	GWGCWC	2 cut(s)	89, 224
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	3 cut(s)	27, 162, 345
Ama87I	CYCGRG	2 cut(s)	37, 172
AoxI	GGCC	1 cut(s)	408
ApeKI	GCWGC	8 cut(s)	71, 74, 206, 209, 242, 361, 497, 557
ApoI	RAATTY	1 cut(s)	641
AspLEI	GCGC	1 cut(s)	591
AspS9I	GGNCC	1 cut(s)	506
AsuC2I	CCSGG	1 cut(s)	388
AvaI	CYCGRG	2 cut(s)	37, 172
AvaII	GGWCC	1 cut(s)	506
AxyI	CCTNAGG	1 cut(s)	366
BaeGI	GKGCMC	1 cut(s)	374
BanI	GGYRCC	2 cut(s)	371, 418
Bbv12I	GWGCWC	2 cut(s)	89, 224
BbvI	GCAGC	8 cut(s)	58, 61, 193, 196, 229, 373, 509, 544
BciT130I	CCWGG	3 cut(s)	104, 239, 412
BcnI	CCSGG	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	1 cut(s)	252
BglI	GCCNNNNNGGC	1 cut(s)	416
BisI	GCNGC	9 cut(s)	72, 75, 207, 210, 243, 362, 498, 529, 558
BlsI	GCNGC	9 cut(s)	73, 76, 208, 211, 244, 363, 499, 530, 559
Bme1390I	CCNGG	4 cut(s)	104, 239, 388, 412
Bme18I	GGWCC	1 cut(s)	506
BmeT110I	CYCGRG	2 cut(s)	37, 172
BmgT120I	GGNCC	1 cut(s)	506
BmiI	GGNNCC	3 cut(s)	373, 420, 507
BmrFI	CCNGG	4 cut(s)	104, 239, 388, 412
BpuEI	CTTGAG	2 cut(s)	425, 455
BpuMI	CCSGG	1 cut(s)	388
BsaBI	GATNNNNATC	1 cut(s)	336
BsaJI	CCNNGG	3 cut(s)	102, 135, 237
Bsc4I	CCNNNNNNNGG	5 cut(s)	42, 103, 177, 238, 252
Bse21I	CCTNAGG	1 cut(s)	366
Bse8I	GATNNNNATC	1 cut(s)	336
BseBI	CCWGG	3 cut(s)	104, 239, 412
BseDI	CCNNGG	3 cut(s)	102, 135, 237
BseJI	GATNNNNATC	1 cut(s)	336
BseLI	CCNNNNNNNGG	5 cut(s)	42, 103, 177, 238, 252
BseSI	GKGCMC	1 cut(s)	374
BseXI	GCAGC	8 cut(s)	58, 61, 193, 196, 229, 373, 509, 544
BseYI	CCCAGC	1 cut(s)	281
BsgI	GTGCAG	1 cut(s)	523
Bsh1236I	CGCG	2 cut(s)	59, 194
BshFI	GGCC	1 cut(s)	410
BshNI	GGYRCC	2 cut(s)	371, 418
BsiHKAI	GWGCWC	2 cut(s)	89, 224
BsiHKCI	CYCGRG	2 cut(s)	37, 172
BsiSI	CCGG	1 cut(s)	388
BslFI	GGGAC	2 cut(s)	464, 519
BslI	CCNNNNNNNGG	5 cut(s)	42, 103, 177, 238, 252
BsmAI	GTCTC	1 cut(s)	101
BsmFI	GGGAC	2 cut(s)	464, 519
BsnI	GGCC	1 cut(s)	410
BsoBI	CYCGRG	2 cut(s)	37, 172
Bsp1286I	GDGCHC	3 cut(s)	89, 224, 374
Bsp143I	GATC	3 cut(s)	32, 167, 337
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	9 cut(s)	18, 28, 97, 132, 153, 163, 232, 526, 529
BspANI	GGCC	1 cut(s)	410
BspFNI	CGCG	2 cut(s)	59, 194
BspLI	GGNNCC	3 cut(s)	373, 420, 507
BspPI	GGATC	3 cut(s)	27, 162, 345
BspT107I	GGYRCC	2 cut(s)	371, 418
BssECI	CCNNGG	3 cut(s)	102, 135, 237
BssMI	GATC	3 cut(s)	32, 167, 337
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	3 cut(s)	104, 239, 412
Bst4CI	ACNGT	2 cut(s)	295, 544
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	1 cut(s)	366
BstDSI	CCRYGG	1 cut(s)	135
BstFNI	CGCG	2 cut(s)	59, 194
BstHHI	GCGC	1 cut(s)	591
BstKTI	GATC	3 cut(s)	35, 170, 340
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	3 cut(s)	32, 167, 337
BstMWI	GCNNNNNNNGC	4 cut(s)	248, 407, 416, 537
BstNI	CCWGG	3 cut(s)	104, 239, 412
BstNSI	RCATGY	1 cut(s)	573
BstSCI	CCNGG	4 cut(s)	102, 237, 386, 410
BstSLI	GKGCMC	1 cut(s)	374
BstUI	CGCG	2 cut(s)	59, 194
BstV1I	GCAGC	8 cut(s)	58, 61, 193, 196, 229, 373, 509, 544
Bsu36I	CCTNAGG	1 cut(s)	366
BsuRI	GGCC	1 cut(s)	410
BtgI	CCRYGG	1 cut(s)	135
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	4 cut(s)	87, 222, 507, 540
Cac8I	GCNNGC	1 cut(s)	393
CfoI	GCGC	1 cut(s)	591
Cfr13I	GGNCC	1 cut(s)	506
CseI	GACGC	2 cut(s)	48, 183
CviAII	CATG	4 cut(s)	136, 446, 476, 570
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	3 cut(s)	34, 169, 339
DpnII	GATC	3 cut(s)	32, 167, 337
EciI	GGCGGA	4 cut(s)	7, 17, 142, 152
Eco130I	CCWWGG	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	506
Eco81I	CCTNAGG	1 cut(s)	366
Eco88I	CYCGRG	2 cut(s)	37, 172
EcoO109I	RGGNCCY	1 cut(s)	506
EcoRII	CCWGG	3 cut(s)	102, 237, 410
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	4 cut(s)	139, 449, 479, 573
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	2 cut(s)	464, 519
FatI	CATG	4 cut(s)	135, 445, 475, 569
FauI	CCCGC	2 cut(s)	139, 533
Fnu4HI	GCNGC	9 cut(s)	72, 75, 207, 210, 243, 362, 498, 529, 558
Fsp4HI	GCNGC	9 cut(s)	72, 75, 207, 210, 243, 362, 498, 529, 558
FspBI	CTAG	1 cut(s)	252
GlaI	GCGC	1 cut(s)	590
GluI	GCNGC	9 cut(s)	72, 75, 207, 210, 243, 362, 498, 529, 558
GsaI	CCCAGC	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	410
HapII	CCGG	1 cut(s)	388
HgaI	GACGC	2 cut(s)	48, 183
HhaI	GCGC	1 cut(s)	591
Hin1II	CATG	4 cut(s)	139, 449, 479, 573
Hin6I	GCGC	1 cut(s)	589
HinP1I	GCGC	1 cut(s)	589
HindIII	AAGCTT	2 cut(s)	261, 318
HinfI	GANTC	5 cut(s)	40, 46, 175, 181, 461
HpaII	CCGG	1 cut(s)	388
Hpy188I	TCNGA	4 cut(s)	45, 180, 492, 639
Hpy188III	TCNNGA	3 cut(s)	326, 404, 458
Hpy99I	CGWCG	3 cut(s)	64, 199, 314
HpyAV	CCTTC	3 cut(s)	34, 169, 409
HpyCH4III	ACNGT	2 cut(s)	295, 544
HpyCH4V	TGCA	1 cut(s)	540
HpyF10VI	GCNNNNNNNGC	4 cut(s)	248, 407, 416, 537
HpyF3I	CTNAG	1 cut(s)	366
Hsp92II	CATG	4 cut(s)	139, 449, 479, 573
HspAI	GCGC	1 cut(s)	589
Kzo9I	GATC	3 cut(s)	32, 167, 337
Lsp1109I	GCAGC	8 cut(s)	58, 61, 193, 196, 229, 373, 509, 544
MaeI	CTAG	1 cut(s)	252
MalI	GATC	3 cut(s)	34, 169, 339
MboI	GATC	3 cut(s)	32, 167, 337
MhlI	GDGCHC	3 cut(s)	89, 224, 374
MluCI	AATT	1 cut(s)	641
MlyI	GAGTC	2 cut(s)	49, 184
MmeI	TCCRAC	3 cut(s)	23, 158, 267
MseI	TTAA	1 cut(s)	303
MspI	CCGG	1 cut(s)	388
MspR9I	CCNGG	4 cut(s)	104, 239, 388, 412
MvaI	CCWGG	3 cut(s)	104, 239, 412
MvnI	CGCG	2 cut(s)	59, 194
MwoI	GCNNNNNNNGC	4 cut(s)	248, 407, 416, 537
NciI	CCSGG	1 cut(s)	388
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	3 cut(s)	32, 167, 337
NlaIII	CATG	4 cut(s)	139, 449, 479, 573
NlaIV	GGNNCC	3 cut(s)	373, 420, 507
NspI	RCATGY	1 cut(s)	573
PaeR7I	CTCGAG	2 cut(s)	37, 172
PciI	ACATGT	1 cut(s)	569
PfeI	GAWTC	3 cut(s)	46, 181, 461
PkrI	GCNGC	9 cut(s)	73, 76, 208, 211, 244, 363, 499, 530, 559
PleI	GAGTC	2 cut(s)	48, 183
PpsI	GAGTC	2 cut(s)	48, 183
PpuMI	RGGWCCY	1 cut(s)	506
PscI	ACATGT	1 cut(s)	569
Psp5II	RGGWCCY	1 cut(s)	506
Psp6I	CCWGG	3 cut(s)	102, 237, 410
PspFI	CCCAGC	1 cut(s)	281
PspGI	CCWGG	3 cut(s)	102, 237, 410
PspN4I	GGNNCC	3 cut(s)	373, 420, 507
PspPI	GGNCC	1 cut(s)	506
PspPPI	RGGWCCY	1 cut(s)	506
PspXI	VCTCGAGB	2 cut(s)	37, 172
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	9 cut(s)	72, 75, 207, 210, 243, 362, 498, 529, 558
Sau3AI	GATC	3 cut(s)	32, 167, 337
Sau96I	GGNCC	1 cut(s)	506
SchI	GAGTC	2 cut(s)	49, 184
ScrFI	CCNGG	4 cut(s)	104, 239, 388, 412
SduI	GDGCHC	3 cut(s)	89, 224, 374
Sfr274I	CTCGAG	2 cut(s)	37, 172
SinI	GGWCC	1 cut(s)	506
SlaI	CTCGAG	2 cut(s)	37, 172
SmlI	CTYRAG	4 cut(s)	37, 172, 404, 434
SmoI	CTYRAG	4 cut(s)	37, 172, 404, 434
Sse9I	AATT	1 cut(s)	641
SsiI	CCGC	9 cut(s)	18, 28, 97, 132, 153, 163, 232, 526, 529
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	4 cut(s)	102, 237, 386, 410
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	2 cut(s)	295, 544
TaqI	TCGA	4 cut(s)	38, 62, 173, 197
TasI	AATT	1 cut(s)	641
TauI	GCSGC	1 cut(s)	531
TfiI	GAWTC	3 cut(s)	46, 181, 461
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	4 cut(s)	94, 229, 507, 547
TseI	GCWGC	8 cut(s)	71, 74, 206, 209, 242, 361, 497, 557
TspDTI	ATGAA	1 cut(s)	330
TspRI	CASTG	4 cut(s)	94, 229, 507, 547
VpaK11BI	GGWCC	1 cut(s)	506
XapI	RAATTY	1 cut(s)	641
XceI	RCATGY	1 cut(s)	573
XhoI	CTCGAG	2 cut(s)	37, 172
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.