Rmu_sc0005856.1_g000034

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005856.1
OG0017589
Physical Location & Seq
Forward (+)
147043 .. 148689
1647 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1647 bp
ctgacccagacccaaaaaactagcagcgagatattcgaggacggcggagagatagacgggagcgccgccgccatgcggaggttagagggaaccataatcctaacgacttggcgccagttctgtaagcactcaccgcccagtttgaatcacattcacatgcacgcaattccattttctgatcgaaatcccactccccaaaacaacattgtgtcatggaacaaaatgatcgccgggtacgtccgaagtggccaaatgcgagttgcccacgacctgttcgatgaaatgcctgtgaaagacgaagtttcctggaacaccatcttatcgggcctgcacaacaccaaagacccagatggagttaatcgatgtttcatgcaaatgagaagagatgggtttagaccaaatgagtataccatctccatagtattgagagcctttttggggaccgtgcttaatgttttggtcccgcagattcacgccttggcaatactctcggcgctcaactcaactgtgtttgttgggtcggcacttatgaaagggtatgcaaatgtaggggatggagtagctatggctagagtattcgatgagatttcggccaaggatgtgtcatcttggaatgcattgatttcgagttacatggaattggggtgcatgcatgacgctcaaagagtttttggtgggatgccggagaggaatgtagtttcttggactagtttagtaaatgggtatatcagaaatgggagggttaacaaagctcgctccgttttcaataaaatgagtgcaaaaaatgtggtctcatggactgttatgatcagtggttatgtgaagaatcagaaatttgtagatgctttgaaacttttcctcttgatgttgaagtcagggactctgcccaatcagttcacattttcaagtgtgctggatgcaaccgctggttgttcttcacttatcttcggtcagcaagtacactcgcgcatcttaaagtctggtataccggaggatgtaaccttgtcaacgtcgcttgttgatatgtatgcaaaatgcggtgatattgctgcagcgttttgtatttttggatccatgccaaagaaaaatttgatatcctggaattcaattataggcggttatgcaaggcatggatttgccacaagagcattggaggagtttgagagaatgaccaacagtggggttaggcctgatgcagttacattcacaaatgtgttatcagcttgtgcacgtggtgggatgattgaagaaggaaaaagcctctttaacaccatgaagtcaaagttcggaatggaaccacaggtggagcattatgcttgcatggtggacctctatgggaaagcaggtgagctagaggaagcggagaagttgatacatgggatgccatttcagccggatgttgttatttggtgtgcgttacttggtgcttgtggtttgcattcaagtttggaacttggtgagtttgctgcagaggaacttgataaactagaaagtgaccatgctgcaatatattcaacgctttcaaggattcatggggaaagaggagtttggaatagtgtgctcgagttaaggaagacaatgaaagagaaaggcgttcaaaagcagaatgcaggtagctgggttgagtctgcacgagtaattagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

548

Amino Acids

60.54

Weight (kDa)

8.03

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 68 - 96 1.5e-07 PPR repeat family
PPR PF01535 70 - 96 3e-06 PPR repeat
PPR_2 PF13041 99 - 145 8.5e-11 PPR repeat family
PPR_2 PF13041 230 - 263 1.6e-07 PPR repeat family
PPR_1 PF12854 230 - 259 1.5e-06 PPR repeat
PPR PF01535 233 - 262 2.6e-07 PPR repeat
PPR_2 PF13041 261 - 307 1.2e-12 PPR repeat family
PPR PF01535 264 - 293 5.8e-07 PPR repeat
PPR_2 PF13041 363 - 411 7.8e-10 PPR repeat family
E_motif PF20431 480 - 542 1.9e-10 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017589)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26830 FvH4_1g26830
malus_domestica MD17G1278700.v1.1
prunus_persica Prupe.3G007300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0487071
rosa_laevigata RLG00000023035
rosa_multiflora Rmu_sc0005856.1_g000034
rosa_roxburghii Rroxscaffold_6G00395200
rosa_samantha Rh3BG315000 Rh3CG313400 Rh3DG310000
rosa_wichuraiana Rw3G024740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1334
Acc36I ACCTGC 2 cut(s) 1334, 1601
AccB1I GGYRCC 1 cut(s) 111
AccI GTMKAC 2 cut(s) 407, 985
AccII CGCG 1 cut(s) 967
AclWI GGATC 2 cut(s) 1065, 1078
AcoI YGGCCR 2 cut(s) 247, 591
AcsI RAATTY 3 cut(s) 833, 1087, 1102
AcvI CACGTG 1 cut(s) 1232
AcyI GRCGYC 1 cut(s) 112
AdeI CACNNNGTG 1 cut(s) 1235
AfaI GTAC 2 cut(s) 236, 960
AfiI CCNNNNNNNGG 4 cut(s) 75, 78, 438, 1179
AhlI ACTAGT 1 cut(s) 707
AjnI CCWGG 2 cut(s) 305, 1097
AleI CACNNNNGTG 1 cut(s) 1211
AluBI AGCT 5 cut(s) 563, 752, 1223, 1351, 1617
AluI AGCT 5 cut(s) 563, 752, 1223, 1351, 1617
Alw21I GWGCWC 2 cut(s) 1231, 1563
Alw26I GTCTC 1 cut(s) 796
Alw44I GTGCAC 1 cut(s) 1227
AlwI GGATC 2 cut(s) 1065, 1078
Ama87I CYCGRG 1 cut(s) 1562
AoxI GGCC 4 cut(s) 247, 325, 591, 1187
ApaLI GTGCAC 1 cut(s) 1227
ApeKI GCWGC 5 cut(s) 24, 1049, 1052, 1466, 1502
ApoI RAATTY 3 cut(s) 833, 1087, 1102
Asp700I GAANNNNTTC 1 cut(s) 854
AspLEI GCGC 4 cut(s) 65, 114, 496, 969
AspS9I GGNCC 4 cut(s) 325, 441, 460, 1327
AsuC2I CCSGG 1 cut(s) 232
AsuHPI GGTGA 4 cut(s) 123, 1052, 1358, 1469
AvaI CYCGRG 1 cut(s) 1562
AvaII GGWCC 3 cut(s) 441, 460, 1327
BaeGI GKGCMC 1 cut(s) 1231
BalI TGGCCA 1 cut(s) 249
BamHI GGATCC 1 cut(s) 1070
BanI GGYRCC 1 cut(s) 111
BauI CACGAG 1 cut(s) 1632
BbrPI CACGTG 1 cut(s) 1232
BbsI GAAGAC 1 cut(s) 1580
Bbv12I GWGCWC 2 cut(s) 1231, 1563
BbvI GCAGC 5 cut(s) 36, 1036, 1064, 1453, 1489
BccI CCATC 5 cut(s) 323, 344, 380, 419, 548
BceAI ACGGC 1 cut(s) 58
BcgI CGANNNNNNTGC 4 cut(s) 471, 505, 606, 640
BciT130I CCWGG 2 cut(s) 307, 1099
BclI TGATCA 1 cut(s) 807
BcnI CCSGG 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 796
BcuI ACTAGT 1 cut(s) 707
BfaI CTAG 5 cut(s) 21, 570, 708, 1352, 1487
BfmI CTRYAG 2 cut(s) 1050, 1467
BfoI RGCGCY 3 cut(s) 66, 115, 497
BfuAI ACCTGC 2 cut(s) 1334, 1601
BisI GCNGC 7 cut(s) 25, 66, 69, 1050, 1053, 1467, 1503
BlsI GCNGC 7 cut(s) 26, 67, 70, 1051, 1054, 1468, 1504
Bme1390I CCNGG 3 cut(s) 232, 307, 1099
Bme18I GGWCC 3 cut(s) 441, 460, 1327
BmeT110I CYCGRG 1 cut(s) 1562
BmgT120I GGNCC 4 cut(s) 325, 441, 460, 1327
BmiI GGNNCC 6 cut(s) 91, 113, 442, 462, 1072, 1296
BmrFI CCNGG 3 cut(s) 232, 307, 1099
BmrI ACTGGG 1 cut(s) 132
BmsI GCATC 6 cut(s) 669, 832, 907, 978, 1183, 1371
BmuI ACTGGG 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 1580
BpuMI CCSGG 1 cut(s) 232
Bsa29I ATCGAT 1 cut(s) 361
BsaAI YACGTR 1 cut(s) 1232
BsaBI GATNNNNATC 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 112
BsaI GGTCTC 1 cut(s) 796
BsaJI CCNNGG 2 cut(s) 477, 594
BsaWI WCCGGW 1 cut(s) 988
Bsc4I CCNNNNNNNGG 4 cut(s) 75, 78, 438, 1179
Bse1I ACTGG 2 cut(s) 115, 138
Bse8I GATNNNNATC 1 cut(s) 183
BseBI CCWGG 2 cut(s) 307, 1099
BseCI ATCGAT 1 cut(s) 361
BseDI CCNNGG 2 cut(s) 477, 594
BseGI GGATG 8 cut(s) 559, 604, 684, 922, 1000, 1245, 1386, 1402
BseJI GATNNNNATC 1 cut(s) 183
BseLI CCNNNNNNNGG 4 cut(s) 75, 78, 438, 1179
BseNI ACTGG 2 cut(s) 115, 138
BseRI GAGGAG 2 cut(s) 1169, 1557
BseSI GKGCMC 1 cut(s) 1231
BseXI GCAGC 5 cut(s) 36, 1036, 1064, 1453, 1489
BseYI CCCAGC 1 cut(s) 1617
BsgI GTGCAG 2 cut(s) 314, 1614
Bsh1236I CGCG 1 cut(s) 967
BshFI GGCC 4 cut(s) 249, 327, 593, 1189
BshNI GGYRCC 1 cut(s) 111
BshVI ATCGAT 1 cut(s) 361
BsiHKAI GWGCWC 2 cut(s) 1231, 1563
BsiHKCI CYCGRG 1 cut(s) 1562
BsiSI CCGG 4 cut(s) 231, 683, 989, 1394
BslFI GGGAC 3 cut(s) 446, 454, 892
BslI CCNNNNNNNGG 4 cut(s) 75, 78, 438, 1179
BsmAI GTCTC 1 cut(s) 796
BsmFI GGGAC 3 cut(s) 446, 454, 892
BsmI GAATGC 3 cut(s) 619, 1438, 1612
BsnI GGCC 4 cut(s) 249, 327, 593, 1189
Bso31I GGTCTC 1 cut(s) 796
BsoBI CYCGRG 1 cut(s) 1562
Bsp1286I GDGCHC 2 cut(s) 1231, 1563
Bsp143I GATC 4 cut(s) 178, 225, 807, 1070
BspANI GGCC 4 cut(s) 249, 327, 593, 1189
BspDI ATCGAT 1 cut(s) 361
BspFNI CGCG 1 cut(s) 967
BspLI GGNNCC 6 cut(s) 91, 113, 442, 462, 1072, 1296
BspMAI CTGCAG 2 cut(s) 1054, 1471
BspMI ACCTGC 2 cut(s) 1334, 1601
BspPI GGATC 2 cut(s) 1065, 1078
BspT107I GGYRCC 1 cut(s) 111
BspTNI GGTCTC 1 cut(s) 796
BsrI ACTGG 2 cut(s) 115, 138
BssECI CCNNGG 2 cut(s) 477, 594
BssMI GATC 4 cut(s) 178, 225, 807, 1070
BssNAI GTATAC 2 cut(s) 408, 986
BssNI GRCGYC 1 cut(s) 112
BssSI CACGAG 1 cut(s) 1632
BssT1I CCWWGG 2 cut(s) 477, 594
Bst1107I GTATAC 2 cut(s) 408, 986
Bst2BI CACGAG 1 cut(s) 1632
Bst2UI CCWGG 2 cut(s) 307, 1099
Bst4CI ACNGT 4 cut(s) 445, 508, 802, 1178
Bst6I CTCTTC 1 cut(s) 376
BstACI GRCGYC 1 cut(s) 112
BstBAI YACGTR 1 cut(s) 1232
BstC8I GCNNGC 5 cut(s) 162, 329, 650, 754, 1318
BstF5I GGATG 8 cut(s) 559, 604, 684, 922, 1000, 1245, 1386, 1402
BstFNI CGCG 1 cut(s) 967
BstH2I RGCGCY 3 cut(s) 66, 115, 497
BstHHI GCGC 4 cut(s) 65, 114, 496, 969
BstKTI GATC 4 cut(s) 181, 228, 810, 1073
BstMAI GTCTC 1 cut(s) 796
BstMBI GATC 4 cut(s) 178, 225, 807, 1070
BstMWI GCNNNNNNNGC 3 cut(s) 133, 1145, 1390
BstNI CCWGG 2 cut(s) 307, 1099
BstNSI RCATGY 2 cut(s) 160, 652
BstSCI CCNGG 3 cut(s) 230, 305, 1097
BstSFI CTRYAG 2 cut(s) 1050, 1467
BstSLI GKGCMC 1 cut(s) 1231
BstUI CGCG 1 cut(s) 967
BstV1I GCAGC 5 cut(s) 36, 1036, 1064, 1453, 1489
BstV2I GAAGAC 1 cut(s) 1580
BstX2I RGATCY 1 cut(s) 1070
BstYI RGATCY 1 cut(s) 1070
BstZ17I GTATAC 2 cut(s) 408, 986
Bsu15I ATCGAT 1 cut(s) 361
BsuRI GGCC 4 cut(s) 249, 327, 593, 1189
BsuTUI ATCGAT 1 cut(s) 361
BtsCI GGATG 8 cut(s) 559, 604, 684, 922, 1000, 1245, 1386, 1402
BtsIMutI CAGTG 2 cut(s) 817, 1183
BveI ACCTGC 2 cut(s) 1334, 1601
Cac8I GCNNGC 5 cut(s) 162, 329, 650, 754, 1318
CfoI GCGC 4 cut(s) 65, 114, 496, 969
Cfr13I GGNCC 4 cut(s) 325, 441, 460, 1327
ClaI ATCGAT 1 cut(s) 361
CseI GACGC 1 cut(s) 665
Csp6I GTAC 2 cut(s) 235, 959
CspCI CAANNNNNGTGG 2 cut(s) 768, 803
CviQI GTAC 2 cut(s) 235, 959
DinI GGCGCC 1 cut(s) 113
DpnI GATC 4 cut(s) 180, 227, 809, 1072
DpnII GATC 4 cut(s) 178, 225, 807, 1070
DraIII CACNNNGTG 1 cut(s) 1235
EaeI YGGCCR 2 cut(s) 247, 591
Eam1104I CTCTTC 1 cut(s) 376
EarI CTCTTC 1 cut(s) 376
EciI GGCGGA 1 cut(s) 60
Eco130I CCWWGG 2 cut(s) 477, 594
Eco147I AGGCCT 1 cut(s) 1189
Eco31I GGTCTC 1 cut(s) 796
Eco32I GATATC 1 cut(s) 1095
Eco47I GGWCC 3 cut(s) 441, 460, 1327
Eco72I CACGTG 1 cut(s) 1232
Eco88I CYCGRG 1 cut(s) 1562
EcoRI GAATTC 1 cut(s) 1102
EcoRII CCWGG 2 cut(s) 305, 1097
EcoRV GATATC 1 cut(s) 1095
EcoT14I CCWWGG 2 cut(s) 477, 594
EcoT22I ATGCAT 2 cut(s) 619, 654
EgeI GGCGCC 1 cut(s) 113
EheI GGCGCC 1 cut(s) 113
ErhI CCWWGG 2 cut(s) 477, 594
FaqI GGGAC 3 cut(s) 446, 454, 892
FauI CCCGC 1 cut(s) 471
FbaI TGATCA 1 cut(s) 807
FblI GTMKAC 2 cut(s) 407, 985
Fnu4HI GCNGC 7 cut(s) 25, 66, 69, 1050, 1053, 1467, 1503
FokI GGATG 8 cut(s) 566, 611, 691, 929, 1007, 1252, 1393, 1409
Fsp4HI GCNGC 7 cut(s) 25, 66, 69, 1050, 1053, 1467, 1503
FspBI CTAG 5 cut(s) 21, 570, 708, 1352, 1487
GlaI GCGC 4 cut(s) 64, 113, 495, 968
GluI GCNGC 7 cut(s) 25, 66, 69, 1050, 1053, 1467, 1503
GsaI CCCAGC 1 cut(s) 1621
HaeII RGCGCY 3 cut(s) 66, 115, 497
HaeIII GGCC 4 cut(s) 249, 327, 593, 1189
HapII CCGG 4 cut(s) 231, 683, 989, 1394
HgaI GACGC 1 cut(s) 665
HhaI GCGC 4 cut(s) 65, 114, 496, 969
Hin1I GRCGYC 1 cut(s) 112
Hin6I GCGC 4 cut(s) 63, 112, 494, 967
HinP1I GCGC 4 cut(s) 63, 112, 494, 967
HincII GTYRAC 2 cut(s) 745, 1008
HindII GTYRAC 2 cut(s) 745, 1008
HinfI GANTC 6 cut(s) 145, 469, 826, 880, 1528, 1625
HpaI GTTAAC 1 cut(s) 745
HpaII CCGG 4 cut(s) 231, 683, 989, 1394
HphI GGTGA 4 cut(s) 123, 1052, 1358, 1469
Hpy166II GTNNAC 8 cut(s) 408, 745, 897, 961, 986, 1008, 1229, 1327
Hpy188I TCNGA 5 cut(s) 178, 242, 731, 831, 1289
Hpy188III TCNNGA 1 cut(s) 862
Hpy8I GTNNAC 8 cut(s) 408, 745, 897, 961, 986, 1008, 1229, 1327
Hpy99I CGWCG 1 cut(s) 1015
HpyAV CCTTC 1 cut(s) 1244
HpyCH4III ACNGT 4 cut(s) 445, 508, 802, 1178
HpyCH4IV ACGT 3 cut(s) 237, 1010, 1231
HpyF10VI GCNNNNNNNGC 3 cut(s) 133, 1145, 1390
HpySE526I ACGT 3 cut(s) 237, 1010, 1231
Hsp92I GRCGYC 1 cut(s) 112
HspAI GCGC 4 cut(s) 63, 112, 494, 967
KasI GGCGCC 1 cut(s) 111
Ksp22I TGATCA 1 cut(s) 807
KspAI GTTAAC 1 cut(s) 745
Kzo9I GATC 4 cut(s) 178, 225, 807, 1070
LmnI GCTCC 3 cut(s) 60, 761, 1306
Lsp1109I GCAGC 5 cut(s) 36, 1036, 1064, 1453, 1489
LweI GCATC 6 cut(s) 669, 832, 907, 978, 1183, 1371
MaeI CTAG 5 cut(s) 21, 570, 708, 1352, 1487
MaeII ACGT 3 cut(s) 237, 1010, 1231
MaeIII GTNAC 5 cut(s) 629, 997, 1198, 1416, 1493
MalI GATC 4 cut(s) 180, 227, 809, 1072
MboI GATC 4 cut(s) 178, 225, 807, 1070
MboII GAAGA 6 cut(s) 393, 835, 927, 937, 1259, 1585
MflI RGATCY 1 cut(s) 1070
MhlI GDGCHC 2 cut(s) 1231, 1563
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 7 cut(s) 165, 638, 833, 1087, 1102, 1107, 1638
MluNI TGGCCA 1 cut(s) 249
Mly113I GGCGCC 1 cut(s) 112
MlyI GAGTC 2 cut(s) 874, 1634
Mox20I TGGCCA 1 cut(s) 249
Mph1103I ATGCAT 2 cut(s) 619, 654
MroXI GAANNNNTTC 1 cut(s) 854
MscI TGGCCA 1 cut(s) 249
MseI TTAA 6 cut(s) 357, 450, 744, 974, 1266, 1568
MslI CAYNNNNRTG 3 cut(s) 155, 374, 1211
Msp20I TGGCCA 1 cut(s) 249
MspA1I CMGCKG 1 cut(s) 926
MspI CCGG 4 cut(s) 231, 683, 989, 1394
MspR9I CCNGG 3 cut(s) 232, 307, 1099
Mva1269I GAATGC 3 cut(s) 619, 1438, 1612
MvaI CCWGG 2 cut(s) 307, 1099
MvnI CGCG 1 cut(s) 967
MwoI GCNNNNNNNGC 3 cut(s) 133, 1145, 1390
NarI GGCGCC 1 cut(s) 112
NciI CCSGG 1 cut(s) 232
NdeII GATC 4 cut(s) 178, 225, 807, 1070
NlaIV GGNNCC 6 cut(s) 91, 113, 442, 462, 1072, 1296
NmeAIII GCCGAG 1 cut(s) 470
NmuCI GTSAC 1 cut(s) 1493
NsiI ATGCAT 2 cut(s) 619, 654
NspI RCATGY 2 cut(s) 160, 652
OliI CACNNNNGTG 1 cut(s) 1211
PaeI GCATGC 1 cut(s) 652
PaeR7I CTCGAG 1 cut(s) 1562
PaqCI CACCTGC 1 cut(s) 1334
PceI AGGCCT 1 cut(s) 1189
PcsI WCGNNNNNNNCGW 2 cut(s) 234, 273
PctI GAATGC 3 cut(s) 619, 1438, 1612
PdmI GAANNNNTTC 1 cut(s) 854
PfeI GAWTC 4 cut(s) 145, 469, 826, 1528
PfoI TCCNGGA 2 cut(s) 305, 1097
PkrI GCNGC 7 cut(s) 26, 67, 70, 1051, 1054, 1468, 1504
PleI GAGTC 2 cut(s) 874, 1633
PluTI GGCGCC 1 cut(s) 115
PmaCI CACGTG 1 cut(s) 1232
PmlI CACGTG 1 cut(s) 1232
PpsI GAGTC 2 cut(s) 874, 1633
Ppu21I YACGTR 1 cut(s) 1232
Psp6I CCWGG 2 cut(s) 305, 1097
PspCI CACGTG 1 cut(s) 1232
PspFI CCCAGC 1 cut(s) 1617
PspGI CCWGG 2 cut(s) 305, 1097
PspN4I GGNNCC 6 cut(s) 91, 113, 442, 462, 1072, 1296
PspPI GGNCC 4 cut(s) 325, 441, 460, 1327
PspXI VCTCGAGB 1 cut(s) 1562
PstI CTGCAG 2 cut(s) 1054, 1471
PsuI RGATCY 1 cut(s) 1070
RsaI GTAC 2 cut(s) 236, 960
RsaNI GTAC 2 cut(s) 235, 959
RseI CAYNNNNRTG 3 cut(s) 155, 374, 1211
SaqAI TTAA 6 cut(s) 357, 450, 744, 974, 1266, 1568
SatI GCNGC 7 cut(s) 25, 66, 69, 1050, 1053, 1467, 1503
Sau3AI GATC 4 cut(s) 178, 225, 807, 1070
Sau96I GGNCC 4 cut(s) 325, 441, 460, 1327
SchI GAGTC 2 cut(s) 874, 1634
ScrFI CCNGG 3 cut(s) 232, 307, 1099
SduI GDGCHC 2 cut(s) 1231, 1563
SfaNI GCATC 6 cut(s) 669, 832, 907, 978, 1183, 1371
SfcI CTRYAG 2 cut(s) 1050, 1467
SfoI GGCGCC 1 cut(s) 113
Sfr274I CTCGAG 1 cut(s) 1562
SinI GGWCC 3 cut(s) 441, 460, 1327
SlaI CTCGAG 1 cut(s) 1562
SmiMI CAYNNNNRTG 3 cut(s) 155, 374, 1211
SmlI CTYRAG 1 cut(s) 1562
SmoI CTYRAG 1 cut(s) 1562
SpeI ACTAGT 1 cut(s) 707
SphI GCATGC 1 cut(s) 652
Sse9I AATT 7 cut(s) 165, 638, 833, 1087, 1102, 1107, 1638
SseBI AGGCCT 1 cut(s) 1189
SspDI GGCGCC 1 cut(s) 111
SspMI CTAG 5 cut(s) 21, 570, 708, 1352, 1487
StuI AGGCCT 1 cut(s) 1189
StyD4I CCNGG 3 cut(s) 230, 305, 1097
StyI CCWWGG 2 cut(s) 477, 594
TaaI ACNGT 4 cut(s) 445, 508, 802, 1178
TaiI ACGT 3 cut(s) 240, 1013, 1234
TaqI TCGA 7 cut(s) 36, 181, 276, 361, 579, 626, 1563
TaqII GACCGA 1 cut(s) 938
TasI AATT 7 cut(s) 165, 638, 833, 1087, 1102, 1107, 1638
TatI WGTACW 1 cut(s) 958
TauI GCSGC 2 cut(s) 68, 71
TfiI GAWTC 4 cut(s) 145, 469, 826, 1528
Tru1I TTAA 6 cut(s) 357, 450, 744, 974, 1266, 1568
Tru9I TTAA 6 cut(s) 357, 450, 744, 974, 1266, 1568
TscAI CASTG 2 cut(s) 817, 1183
TseFI GTSAC 1 cut(s) 1493
TseI GCWGC 5 cut(s) 24, 1049, 1052, 1466, 1502
Tsp45I GTSAC 1 cut(s) 1493
TspDTI ATGAA 6 cut(s) 294, 358, 545, 1289, 1520, 1595
TspGWI ACGGA 1 cut(s) 748
TspRI CASTG 2 cut(s) 817, 1183
VneI GTGCAC 1 cut(s) 1227
VpaK11BI GGWCC 3 cut(s) 441, 460, 1327
XapI RAATTY 3 cut(s) 833, 1087, 1102
XceI RCATGY 2 cut(s) 160, 652
XcmI CCANNNNNNNNNTGG 1 cut(s) 1147
XhoI CTCGAG 1 cut(s) 1562
XmiI GTMKAC 2 cut(s) 407, 985
XmnI GAANNNNTTC 1 cut(s) 854
XspI CTAG 5 cut(s) 21, 570, 708, 1352, 1487
Zsp2I ATGCAT 2 cut(s) 619, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.