Rmu_sc0005969.1_g000043

histone acetyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005969.1
OG0017675
Physical Location & Seq
Reverse (-)
157980 .. 159227
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1248 bp
atgataaagaaagcaagtaatgaagggattgtggtcggcagtactaacttatatgatcggtattttattcctagtagtacttgggaataccactccaaggtcacagcagctcgtttgccacattttgatggtgactattggtctaatgctgctgaagatttgatcaaggagattggcaaggaggaggagacaaaaattagaaagagaactttagaagcgatgggacatacaaatgcttctgatggttccaccaaagatattcttctgatgcagaaactgggggatgctatcttaaccaacagggagaatttcatggttgtcgatttgcagtatgtttgcatacgctgcaatcaagcgatattatctggggaacactggtcttgtagtcagtgcaaaaactttcacatttgtgaaaaatgccatagcctttgtggtgggaaggacatgcacatgacaatcaacatggaacaacatgtgctctctcgggtaatagtactactggaggattatgagcttcctgatacaaaggatagagaggttattttgaacaatggtttattcaaggaaaggacttctttcttgaacttctgtgtgaagaatcgttatcaatttgacatgcttcgtcaggccaagtattcctcactgatgattctccatcacctcagtgatcttactgcactgactagtgctgagaagaacaagacatgcagcaacattagccataaagttgctgatcagagctggatatgtgagattgatcaagacaaaggcagttcacccgcggttggtcatgtgacaaagatcagcagagagacagaactgactgaaggattgagtccagcattgataaatgaactgctccatgtgttaaaacatgctgatgtgtgttaccctatcaagaaccggccttgctcttaccccaacacaaactgcctcaaaattaaaaagctatttgtccatgtaaaaaagtgcagtgttcgagctgctggaggttgtgaaccatgtaaaaaggcgtggcttggattgattttgcattcgaaagaatgtagaaaatcaaattgcattgtaccgcgttgcatggacctgaggaagtacacagatcagcgagggaaaaccagagatgggactaaaagatttaaagctaacatggaggtgtccagttgttcaagccagaccttgttgccaacagaatcacagtggttgcctgaggctgagatatgggcattcccatacattattccattttag

Protein Analysis

415

Amino Acids

47.29

Weight (kDa)

8.48

Isoelectric Point (pI)

33.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-TAZ PF02135 284 - 359 3.1e-09 TAZ zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017675)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g00740
pyrus_communis pycom09g00930
rosa_chinensis RchiOBHm_Chr3g0448221
rosa_laevigata RLG00000025936
rosa_multiflora Rmu_co8052802.1_g000001 Rmu_sc0005969.1_g000037 Rmu_sc0005969.1_g000043
rosa_rugosa Rorug02G0609000
rosa_samantha Rh3BG008500 Rh3CG008600 Rh3DG009200
rosa_wichuraiana Rw3G000720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 782, 1072
AciI CCGC 3 cut(s) 780, 782, 1070
AcsI RAATTY 1 cut(s) 307
AcuI CTGAAG 2 cut(s) 174, 846
AfaI GTAC 5 cut(s) 43, 79, 495, 1068, 1094
AfiI CCNNNNNNNGG 3 cut(s) 97, 785, 1122
AflIII ACRYGT 1 cut(s) 472
AgsI TTSAA 4 cut(s) 547, 562, 583, 1167
AhdI GACNNNNNGTC 1 cut(s) 139
AhlI ACTAGT 1 cut(s) 683
AleI CACNNNNGTG 2 cut(s) 408, 663
AluBI AGCT 6 cut(s) 110, 514, 741, 949, 983, 1142
AluI AGCT 6 cut(s) 110, 514, 741, 949, 983, 1142
Alw21I GWGCWC 1 cut(s) 480
Alw26I GTCTC 2 cut(s) 182, 806
AlwNI CAGNNNCTG 1 cut(s) 277
Ama87I CYCGRG 1 cut(s) 483
AoxI GGCC 2 cut(s) 627, 905
ApeKI GCWGC 5 cut(s) 107, 149, 345, 708, 983
ApoI RAATTY 1 cut(s) 307
AspS9I GGNCC 1 cut(s) 1081
AsuHPI GGTGA 3 cut(s) 143, 650, 768
AsuII TTCGAA 1 cut(s) 1037
AvaI CYCGRG 1 cut(s) 483
AvaII GGWCC 1 cut(s) 1081
AxyI CCTNAGG 2 cut(s) 1085, 1206
Bbv12I GWGCWC 1 cut(s) 480
BbvI GCAGC 5 cut(s) 119, 136, 332, 720, 970
BccI CCATC 5 cut(s) 122, 214, 236, 663, 1115
BclI TGATCA 3 cut(s) 162, 733, 757
BcoDI GTCTC 2 cut(s) 182, 806
BcuI ACTAGT 1 cut(s) 683
BfaI CTAG 2 cut(s) 72, 684
BisI GCNGC 5 cut(s) 108, 150, 346, 709, 984
BlsI GCNGC 5 cut(s) 109, 151, 347, 710, 985
BmcAI AGTACT 3 cut(s) 43, 79, 495
Bme18I GGWCC 1 cut(s) 1081
BmeRI GACNNNNNGTC 1 cut(s) 139
BmeT110I CYCGRG 1 cut(s) 483
BmgT120I GGNCC 1 cut(s) 1081
BmiI GGNNCC 1 cut(s) 247
BmrI ACTGGG 1 cut(s) 287
BmsI GCATC 2 cut(s) 258, 274
BmuI ACTGGG 1 cut(s) 287
BpmI CTGGAG 2 cut(s) 521, 1008
Bpu14I TTCGAA 1 cut(s) 1037
BsaJI CCNNGG 2 cut(s) 96, 780
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 785, 1122
Bse118I RCCGGY 1 cut(s) 903
Bse1I ACTGG 4 cut(s) 282, 380, 504, 1158
Bse21I CCTNAGG 2 cut(s) 1085, 1206
BseDI CCNNGG 2 cut(s) 96, 780
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 3 cut(s) 97, 785, 1122
BseMII CTCAG 5 cut(s) 676, 681, 1076, 1197, 1203
BseNI ACTGG 4 cut(s) 282, 380, 504, 1158
BseRI GAGGAG 2 cut(s) 197, 200
BseXI GCAGC 5 cut(s) 119, 136, 332, 720, 970
BsgI GTGCAG 2 cut(s) 660, 991
Bsh1236I CGCG 2 cut(s) 782, 1072
BshFI GGCC 2 cut(s) 629, 907
BsiHKAI GWGCWC 1 cut(s) 480
BsiHKCI CYCGRG 1 cut(s) 483
BsiSI CCGG 1 cut(s) 904
BslFI GGGAC 2 cut(s) 237, 1138
BslI CCNNNNNNNGG 3 cut(s) 97, 785, 1122
BsmAI GTCTC 2 cut(s) 182, 806
BsmFI GGGAC 2 cut(s) 237, 1138
BsmI GAATGC 2 cut(s) 1033, 1223
BsnI GGCC 2 cut(s) 629, 907
BsoBI CYCGRG 1 cut(s) 483
Bsp119I TTCGAA 1 cut(s) 1037
Bsp1286I GDGCHC 1 cut(s) 480
Bsp143I GATC 7 cut(s) 55, 162, 667, 733, 757, 801, 1099
BspACI CCGC 3 cut(s) 780, 782, 1070
BspANI GGCC 2 cut(s) 629, 907
BspCNI CTCAG 5 cut(s) 675, 682, 1077, 1198, 1204
BspFNI CGCG 2 cut(s) 782, 1072
BspLI GGNNCC 1 cut(s) 247
BspT104I TTCGAA 1 cut(s) 1037
BsrFI RCCGGY 1 cut(s) 903
BsrI ACTGG 4 cut(s) 282, 380, 504, 1158
BssAI RCCGGY 1 cut(s) 903
BssECI CCNNGG 2 cut(s) 96, 780
BssMI GATC 7 cut(s) 55, 162, 667, 733, 757, 801, 1099
BssT1I CCWWGG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 1197
BstAPI GCANNNNNTGC 1 cut(s) 345
BstBI TTCGAA 1 cut(s) 1037
BstDEI CTNAG 5 cut(s) 662, 690, 1085, 1206, 1212
BstDSI CCRYGG 1 cut(s) 780
BstF5I GGATG 1 cut(s) 289
BstFNI CGCG 2 cut(s) 782, 1072
BstKTI GATC 7 cut(s) 58, 165, 670, 736, 760, 804, 1102
BstMAI GTCTC 2 cut(s) 182, 806
BstMBI GATC 7 cut(s) 55, 162, 667, 733, 757, 801, 1099
BstMWI GCNNNNNNNGC 2 cut(s) 345, 717
BstNSI RCATGY 5 cut(s) 448, 476, 619, 708, 878
BstUI CGCG 2 cut(s) 782, 1072
BstV1I GCAGC 5 cut(s) 119, 136, 332, 720, 970
Bsu36I CCTNAGG 2 cut(s) 1085, 1206
BsuRI GGCC 2 cut(s) 629, 907
BtgI CCRYGG 1 cut(s) 780
BtgZI GCGATG 1 cut(s) 233
BtsCI GGATG 1 cut(s) 289
BtsI GCAGTG 1 cut(s) 979
BtsIMutI CAGTG 7 cut(s) 373, 395, 641, 670, 677, 979, 1202
CaiI CAGNNNCTG 1 cut(s) 277
Cfr10I RCCGGY 1 cut(s) 903
Cfr13I GGNCC 1 cut(s) 1081
Cfr42I CCGCGG 1 cut(s) 783
Csp6I GTAC 5 cut(s) 42, 78, 494, 1067, 1093
CviQI GTAC 5 cut(s) 42, 78, 494, 1067, 1093
DdeI CTNAG 5 cut(s) 662, 690, 1085, 1206, 1212
DpnI GATC 7 cut(s) 57, 164, 669, 735, 759, 803, 1101
DpnII GATC 7 cut(s) 55, 162, 667, 733, 757, 801, 1099
DraI TTTAAA 1 cut(s) 1138
DriI GACNNNNNGTC 1 cut(s) 139
Eam1105I GACNNNNNGTC 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 1081
Eco57I CTGAAG 2 cut(s) 174, 846
Eco81I CCTNAGG 2 cut(s) 1085, 1206
Eco88I CYCGRG 1 cut(s) 483
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FalI AAGNNNNNCTT 4 cut(s) 246, 278, 559, 591
FaqI GGGAC 2 cut(s) 237, 1138
FauI CCCGC 1 cut(s) 787
FbaI TGATCA 3 cut(s) 162, 733, 757
Fnu4HI GCNGC 5 cut(s) 108, 150, 346, 709, 984
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 5 cut(s) 108, 150, 346, 709, 984
FspBI CTAG 2 cut(s) 72, 684
GluI GCNGC 5 cut(s) 108, 150, 346, 709, 984
GsuI CTGGAG 2 cut(s) 521, 1008
HaeIII GGCC 2 cut(s) 629, 907
HapII CCGG 1 cut(s) 904
HinfI GANTC 4 cut(s) 598, 649, 835, 1190
HpaII CCGG 1 cut(s) 904
HphI GGTGA 3 cut(s) 143, 650, 768
Hpy166II GTNNAC 3 cut(s) 776, 998, 1095
Hpy188I TCNGA 3 cut(s) 241, 267, 738
Hpy188III TCNNGA 4 cut(s) 518, 580, 761, 898
Hpy8I GTNNAC 3 cut(s) 776, 998, 1095
HpyAV CCTTC 3 cut(s) 17, 433, 821
HpyCH4III ACNGT 1 cut(s) 1197
HpyF10VI GCNNNNNNNGC 2 cut(s) 345, 717
HpyF3I CTNAG 5 cut(s) 662, 690, 1085, 1206, 1212
Ksp22I TGATCA 3 cut(s) 162, 733, 757
KspI CCGCGG 1 cut(s) 783
Kzo9I GATC 7 cut(s) 55, 162, 667, 733, 757, 801, 1099
LmnI GCTCC 1 cut(s) 864
Lsp1109I GCAGC 5 cut(s) 119, 136, 332, 720, 970
LweI GCATC 2 cut(s) 258, 274
MaeI CTAG 2 cut(s) 72, 684
MaeIII GTNAC 4 cut(s) 100, 131, 793, 887
MalI GATC 7 cut(s) 57, 164, 669, 735, 759, 803, 1101
MboI GATC 7 cut(s) 55, 162, 667, 733, 757, 801, 1099
MboII GAAGA 4 cut(s) 167, 254, 607, 706
MhlI GDGCHC 1 cut(s) 480
MluCI AATT 5 cut(s) 195, 307, 608, 939, 1057
MlyI GAGTC 1 cut(s) 844
MseI TTAA 4 cut(s) 293, 869, 942, 1137
MslI CAYNNNNRTG 7 cut(s) 126, 231, 408, 449, 663, 879, 1151
MspA1I CMGCKG 1 cut(s) 782
MspI CCGG 1 cut(s) 904
Mva1269I GAATGC 2 cut(s) 1033, 1223
MvnI CGCG 2 cut(s) 782, 1072
MwoI GCNNNNNNNGC 2 cut(s) 345, 717
NdeII GATC 7 cut(s) 55, 162, 667, 733, 757, 801, 1099
NlaIV GGNNCC 1 cut(s) 247
NmuCI GTSAC 3 cut(s) 100, 131, 793
NspI RCATGY 5 cut(s) 448, 476, 619, 708, 878
NspV TTCGAA 1 cut(s) 1037
OliI CACNNNNGTG 2 cut(s) 408, 663
PciI ACATGT 1 cut(s) 472
PctI GAATGC 2 cut(s) 1033, 1223
PfeI GAWTC 3 cut(s) 598, 649, 1190
PkrI GCNGC 5 cut(s) 109, 151, 347, 710, 985
PleI GAGTC 1 cut(s) 843
PpsI GAGTC 1 cut(s) 843
PscI ACATGT 1 cut(s) 472
PspN4I GGNNCC 1 cut(s) 247
PspPI GGNCC 1 cut(s) 1081
PstNI CAGNNNCTG 1 cut(s) 277
RsaI GTAC 5 cut(s) 43, 79, 495, 1068, 1094
RsaNI GTAC 5 cut(s) 42, 78, 494, 1067, 1093
RseI CAYNNNNRTG 7 cut(s) 126, 231, 408, 449, 663, 879, 1151
SacII CCGCGG 1 cut(s) 783
SaqAI TTAA 4 cut(s) 293, 869, 942, 1137
SatI GCNGC 5 cut(s) 108, 150, 346, 709, 984
Sau3AI GATC 7 cut(s) 55, 162, 667, 733, 757, 801, 1099
Sau96I GGNCC 1 cut(s) 1081
ScaI AGTACT 3 cut(s) 43, 79, 495
SchI GAGTC 1 cut(s) 844
SduI GDGCHC 1 cut(s) 480
SfaNI GCATC 2 cut(s) 258, 274
Sfr303I CCGCGG 1 cut(s) 783
SfuI TTCGAA 1 cut(s) 1037
SgrBI CCGCGG 1 cut(s) 783
SinI GGWCC 1 cut(s) 1081
SmiMI CAYNNNNRTG 7 cut(s) 126, 231, 408, 449, 663, 879, 1151
SpeI ACTAGT 1 cut(s) 683
Sse9I AATT 5 cut(s) 195, 307, 608, 939, 1057
SsiI CCGC 3 cut(s) 780, 782, 1070
SspMI CTAG 2 cut(s) 72, 684
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 1197
TaqI TCGA 3 cut(s) 321, 979, 1037
TasI AATT 5 cut(s) 195, 307, 608, 939, 1057
TatI WGTACW 4 cut(s) 41, 77, 493, 1092
TfiI GAWTC 3 cut(s) 598, 649, 1190
Tru1I TTAA 4 cut(s) 293, 869, 942, 1137
Tru9I TTAA 4 cut(s) 293, 869, 942, 1137
TscAI CASTG 7 cut(s) 380, 395, 648, 670, 684, 979, 1202
TseFI GTSAC 3 cut(s) 100, 131, 793
TseI GCWGC 5 cut(s) 107, 149, 345, 708, 983
Tsp45I GTSAC 3 cut(s) 100, 131, 793
TspDTI ATGAA 3 cut(s) 36, 301, 867
TspRI CASTG 7 cut(s) 380, 395, 648, 670, 684, 979, 1202
VpaK11BI GGWCC 1 cut(s) 1081
XapI RAATTY 1 cut(s) 307
XceI RCATGY 5 cut(s) 448, 476, 619, 708, 878
XcmI CCANNNNNNNNNTGG 1 cut(s) 428
XspI CTAG 2 cut(s) 72, 684
ZrmI AGTACT 3 cut(s) 43, 79, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.