Rmu_sc0006741.1_g000001

Man1-Src1p-C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006741.1
OG0011342
Physical Location & Seq
Reverse (-)
2470 .. 5726
3257 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1074 bp
atgtcttcgactccaaagaagcgccctaaacccaaacccaggcctcactctcccccttcttcgattccattactcctcgaacctcccccgagtctctttcccaccaaggacgagtttctcaggctcatagcagtcctcgccatcgctacctccgtcgctttcaccgtcaatttcttctactccgctttcttcaacccccaatttaagcccttctgcgatggccccgacgactccctcgacttcatctccgattattgtgagccgtgtccgagtcatggacgatgccaggaaggccagttggaatgtgatcaaggatataaaaagcatgggaagttatgcgtagaagatggagttattcaggacacggctacgaaacttgtggataagaacgagctggcggaacatgttggctcagacaatgcaatttatatgtatgcaaaacaaagggcaatggagatgattaatagaatgttggacagaaggacaaattctctgggggtcaaagagttgaagtgtcctgacatgctagcagaacgctacaaaccatcttcctgtcgcatccgtcaatggacctctgagcatgcattacttatttttccagtttgcgcagcgcttctgggattgacgttgttacttcggaaattccaccaaaggcagcatctatcgactagagttgacgagctttaccaagagatctgtgaagagctcgaggagaaagccttgatgaatagagcgaatgataaatgtgaaccatgggttgttgcctctgcattgcgtgattctcttctttccctgaaagagaggaagaaccctgtattgtggaaaaaggtagaagagttaattcaggaagattcccgtgtggatcgttatccaaagttggtgaaaggtgaatcaaaagtagtatgggaatggcaagttgaaggatctttgagctcttcgaggaaaagtagaaagggtgaggctagcaaattgaagtccagcaaaggtgcagaaaggagtcctgatcaacatctccattcactcaaggctgaccaaaggcaattgaattttgatacaacgatgttgaggcagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MSC

Protein Analysis

357

Amino Acids

40.86

Weight (kDa)

8.65

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MSC PF09402 185 - 304 1.4e-14 Man1-Src1p-C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46560
fragaria_vesca FvH4_5g21210 FvH4_5g21210 FvH4_5g21210 FvH4_5g21210
malus_domestica MD06G1040000.v1.1
prunus_persica Prupe.5G046100_v2.0.a1 Prupe.5G046100_v2.0.a1
pyrus_communis pycom06g03340
rosa_chinensis RchiOBHm_Chr7g0208351
rosa_laevigata RLG00000003220
rosa_multiflora Rmu_sc0006741.1_g000001 Rmu_ssc0000063.1_g000001
rosa_roxburghii Rroxscaffold_3G00250530
rosa_rugosa Rorug07G0103800
rosa_samantha Rh7AG238200 Rh7BG233700 Rh7CG253700 Rh7DG243900
rosa_wichuraiana Rw7G020300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 607
AciI CCGC 2 cut(s) 183, 398
AclWI GGATC 2 cut(s) 870, 931
AcsI RAATTY 3 cut(s) 487, 641, 1045
AfeI AGCGCT 1 cut(s) 612
AfiI CCNNNNNNNGG 2 cut(s) 39, 275
AflIII ACRYGT 1 cut(s) 403
AgsI TTSAA 5 cut(s) 193, 511, 920, 973, 1045
AjnI CCWGG 2 cut(s) 38, 285
AluBI AGCT 4 cut(s) 394, 682, 706, 933
AluI AGCT 4 cut(s) 394, 682, 706, 933
Alw21I GWGCWC 2 cut(s) 708, 935
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 2 cut(s) 870, 931
Ama87I CYCGRG 2 cut(s) 88, 707
Aor51HI AGCGCT 1 cut(s) 612
AoxI GGCC 3 cut(s) 41, 220, 292
ApeKI GCWGC 2 cut(s) 608, 655
ApoI RAATTY 3 cut(s) 487, 641, 1045
AseI ATTAAT 1 cut(s) 462
AspLEI GCGC 3 cut(s) 24, 608, 613
AspS9I GGNCC 2 cut(s) 221, 570
AsuHPI GGTGA 4 cut(s) 154, 892, 899, 968
AsuNHI GCTAGC 2 cut(s) 526, 962
AvaI CYCGRG 2 cut(s) 88, 707
AvaII GGWCC 1 cut(s) 570
BanII GRGCYC 2 cut(s) 708, 935
Bbv12I GWGCWC 2 cut(s) 708, 935
BbvI GCAGC 2 cut(s) 620, 667
BccI CCATC 4 cut(s) 149, 212, 341, 553
BceAI ACGGC 2 cut(s) 247, 381
BciT130I CCWGG 2 cut(s) 40, 287
BclI TGATCA 2 cut(s) 307, 1003
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 3 cut(s) 527, 669, 963
BfoI RGCGCY 2 cut(s) 25, 614
BglI GCCNNNNNGGC 1 cut(s) 291
BglII AGATCT 1 cut(s) 693
BisI GCNGC 2 cut(s) 609, 656
BlsI GCNGC 2 cut(s) 610, 657
Bme1390I CCNGG 2 cut(s) 40, 287
Bme18I GGWCC 1 cut(s) 570
BmeT110I CYCGRG 2 cut(s) 88, 707
BmgT120I GGNCC 2 cut(s) 221, 570
BmiI GGNNCC 1 cut(s) 223
BmrFI CCNGG 2 cut(s) 40, 287
BmsI GCATC 3 cut(s) 272, 567, 667
BmtI GCTAGC 2 cut(s) 530, 966
BpuEI CTTGAG 1 cut(s) 1007
BsaBI GATNNNNATC 2 cut(s) 867, 1008
BsaJI CCNNGG 3 cut(s) 38, 105, 752
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 275
Bse1I ACTGG 2 cut(s) 295, 599
Bse3DI GCAATG 2 cut(s) 456, 770
Bse8I GATNNNNATC 2 cut(s) 867, 1008
BseBI CCWGG 2 cut(s) 40, 287
BseDI CCNNGG 3 cut(s) 38, 105, 752
BseGI GGATG 1 cut(s) 558
BseJI GATNNNNATC 2 cut(s) 867, 1008
BseLI CCNNNNNNNGG 2 cut(s) 39, 275
BseMI GCAATG 2 cut(s) 456, 770
BseMII CTCAG 3 cut(s) 133, 426, 567
BseNI ACTGG 2 cut(s) 295, 599
BseRI GAGGAG 2 cut(s) 65, 725
BseXI GCAGC 2 cut(s) 620, 667
BsgI GTGCAG 1 cut(s) 1008
BshFI GGCC 3 cut(s) 43, 222, 294
BsiHKAI GWGCWC 2 cut(s) 708, 935
BsiHKCI CYCGRG 2 cut(s) 88, 707
BslI CCNNNNNNNGG 2 cut(s) 39, 275
BsmAI GTCTC 1 cut(s) 98
BsnI GGCC 3 cut(s) 43, 222, 294
BsoBI CYCGRG 2 cut(s) 88, 707
Bsp1286I GDGCHC 2 cut(s) 708, 935
Bsp143I GATC 5 cut(s) 307, 693, 862, 923, 1003
Bsp19I CCATGG 1 cut(s) 752
BspACI CCGC 2 cut(s) 183, 398
BspANI GGCC 3 cut(s) 43, 222, 294
BspCNI CTCAG 3 cut(s) 132, 425, 568
BspLI GGNNCC 1 cut(s) 223
BspOI GCTAGC 2 cut(s) 530, 966
BspPI GGATC 2 cut(s) 870, 931
BspQI GCTCTTC 2 cut(s) 696, 940
BsrDI GCAATG 2 cut(s) 456, 770
BsrI ACTGG 2 cut(s) 295, 599
BssECI CCNNGG 3 cut(s) 38, 105, 752
BssMI GATC 5 cut(s) 307, 693, 862, 923, 1003
BssT1I CCWWGG 2 cut(s) 105, 752
Bst2UI CCWGG 2 cut(s) 40, 287
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 4 cut(s) 696, 789, 828, 940
BstC8I GCNNGC 4 cut(s) 396, 528, 582, 964
BstDEI CTNAG 3 cut(s) 119, 412, 576
BstDSI CCRYGG 1 cut(s) 752
BstF5I GGATG 1 cut(s) 558
BstH2I RGCGCY 2 cut(s) 25, 614
BstHHI GCGC 3 cut(s) 24, 608, 613
BstKTI GATC 5 cut(s) 310, 696, 865, 926, 1006
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 5 cut(s) 307, 693, 862, 923, 1003
BstMWI GCNNNNNNNGC 2 cut(s) 137, 291
BstNI CCWGG 2 cut(s) 40, 287
BstNSI RCATGY 3 cut(s) 407, 526, 584
BstSCI CCNGG 2 cut(s) 38, 285
BstV1I GCAGC 2 cut(s) 620, 667
BstX2I RGATCY 2 cut(s) 693, 923
BstYI RGATCY 2 cut(s) 693, 923
BsuRI GGCC 3 cut(s) 43, 222, 294
BtgI CCRYGG 1 cut(s) 752
BtgZI GCGATG 2 cut(s) 127, 231
BtsCI GGATG 1 cut(s) 558
Cac8I GCNNGC 4 cut(s) 396, 528, 582, 964
CfoI GCGC 3 cut(s) 24, 608, 613
Cfr13I GGNCC 2 cut(s) 221, 570
CviAII CATG 6 cut(s) 275, 326, 404, 523, 581, 753
DdeI CTNAG 3 cut(s) 119, 412, 576
DpnI GATC 5 cut(s) 309, 695, 864, 925, 1005
DpnII GATC 5 cut(s) 307, 693, 862, 923, 1003
Eam1104I CTCTTC 4 cut(s) 696, 789, 828, 940
EarI CTCTTC 4 cut(s) 696, 789, 828, 940
EciI GGCGGA 1 cut(s) 413
Ecl136II GAGCTC 2 cut(s) 706, 933
Eco130I CCWWGG 2 cut(s) 105, 752
Eco147I AGGCCT 1 cut(s) 43
Eco24I GRGCYC 2 cut(s) 708, 935
Eco47I GGWCC 1 cut(s) 570
Eco47III AGCGCT 1 cut(s) 612
Eco53kI GAGCTC 2 cut(s) 706, 933
Eco88I CYCGRG 2 cut(s) 88, 707
EcoICRI GAGCTC 2 cut(s) 706, 933
EcoRII CCWGG 2 cut(s) 38, 285
EcoT14I CCWWGG 2 cut(s) 105, 752
EcoT22I ATGCAT 1 cut(s) 586
EcoT38I GRGCYC 2 cut(s) 708, 935
ErhI CCWWGG 2 cut(s) 105, 752
FaeI CATG 6 cut(s) 278, 329, 407, 526, 584, 756
FatI CATG 6 cut(s) 274, 325, 403, 522, 580, 752
FbaI TGATCA 2 cut(s) 307, 1003
Fnu4HI GCNGC 2 cut(s) 609, 656
FokI GGATG 1 cut(s) 545
FriOI GRGCYC 2 cut(s) 708, 935
Fsp4HI GCNGC 2 cut(s) 609, 656
FspBI CTAG 3 cut(s) 527, 669, 963
FspI TGCGCA 1 cut(s) 607
GlaI GCGC 3 cut(s) 23, 607, 612
GluI GCNGC 2 cut(s) 609, 656
HaeII RGCGCY 2 cut(s) 25, 614
HaeIII GGCC 3 cut(s) 43, 222, 294
HhaI GCGC 3 cut(s) 24, 608, 613
Hin1II CATG 6 cut(s) 278, 329, 407, 526, 584, 756
Hin6I GCGC 3 cut(s) 22, 606, 611
HinP1I GCGC 3 cut(s) 22, 606, 611
HincII GTYRAC 1 cut(s) 676
HindII GTYRAC 1 cut(s) 676
HinfI GANTC 9 cut(s) 10, 64, 91, 230, 271, 779, 851, 890, 997
HphI GGTGA 4 cut(s) 154, 892, 899, 968
Hpy166II GTNNAC 2 cut(s) 676, 749
Hpy188I TCNGA 5 cut(s) 250, 270, 415, 577, 639
Hpy188III TCNNGA 4 cut(s) 359, 518, 845, 1001
Hpy8I GTNNAC 2 cut(s) 676, 749
Hpy99I CGWCG 2 cut(s) 158, 230
HpyAV CCTTC 5 cut(s) 66, 220, 284, 474, 914
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 626
HpyCH4V TGCA 5 cut(s) 422, 437, 584, 770, 989
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 291
HpyF3I CTNAG 3 cut(s) 119, 412, 576
HpySE526I ACGT 1 cut(s) 626
Hsp92II CATG 6 cut(s) 278, 329, 407, 526, 584, 756
HspAI GCGC 3 cut(s) 22, 606, 611
Ksp22I TGATCA 2 cut(s) 307, 1003
Kzo9I GATC 5 cut(s) 307, 693, 862, 923, 1003
LguI GCTCTTC 2 cut(s) 696, 940
Lsp1109I GCAGC 2 cut(s) 620, 667
LweI GCATC 3 cut(s) 272, 567, 667
MaeI CTAG 3 cut(s) 527, 669, 963
MaeII ACGT 1 cut(s) 626
MaeIII GTNAC 1 cut(s) 630
MalI GATC 5 cut(s) 309, 695, 864, 925, 1005
MboI GATC 5 cut(s) 307, 693, 862, 923, 1003
MfeI CAATTG 1 cut(s) 1040
MflI RGATCY 2 cut(s) 693, 923
MhlI GDGCHC 2 cut(s) 708, 935
MluCI AATT 9 cut(s) 169, 200, 423, 487, 641, 840, 968, 1040, 1045
MlyI GAGTC 5 cut(s) 4, 100, 224, 280, 1006
MmeI TCCRAC 2 cut(s) 279, 453
Mph1103I ATGCAT 1 cut(s) 586
MseI TTAA 3 cut(s) 204, 462, 839
MspR9I CCNGG 2 cut(s) 40, 287
MteI GCGCNGCGC 1 cut(s) 609
MunI CAATTG 1 cut(s) 1040
MvaI CCWGG 2 cut(s) 40, 287
MwoI GCNNNNNNNGC 2 cut(s) 137, 291
NcoI CCATGG 1 cut(s) 752
NdeII GATC 5 cut(s) 307, 693, 862, 923, 1003
NheI GCTAGC 2 cut(s) 526, 962
NlaIII CATG 6 cut(s) 278, 329, 407, 526, 584, 756
NlaIV GGNNCC 1 cut(s) 223
NsbI TGCGCA 1 cut(s) 607
NsiI ATGCAT 1 cut(s) 586
NspI RCATGY 3 cut(s) 407, 526, 584
PaeI GCATGC 1 cut(s) 584
PaeR7I CTCGAG 1 cut(s) 707
PceI AGGCCT 1 cut(s) 43
PciI ACATGT 1 cut(s) 403
PciSI GCTCTTC 2 cut(s) 696, 940
PcsI WCGNNNNNNNCGW 3 cut(s) 150, 162, 234
PfeI GAWTC 4 cut(s) 64, 779, 851, 890
PkrI GCNGC 2 cut(s) 610, 657
PleI GAGTC 5 cut(s) 4, 99, 224, 279, 1005
PpsI GAGTC 5 cut(s) 4, 99, 224, 279, 1005
PscI ACATGT 1 cut(s) 403
PshBI ATTAAT 1 cut(s) 462
Psp124BI GAGCTC 2 cut(s) 708, 935
Psp6I CCWGG 2 cut(s) 38, 285
PspGI CCWGG 2 cut(s) 38, 285
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 2 cut(s) 221, 570
PspXI VCTCGAGB 1 cut(s) 707
PsuI RGATCY 2 cut(s) 693, 923
SacI GAGCTC 2 cut(s) 708, 935
SapI GCTCTTC 2 cut(s) 696, 940
SaqAI TTAA 3 cut(s) 204, 462, 839
SatI GCNGC 2 cut(s) 609, 656
Sau3AI GATC 5 cut(s) 307, 693, 862, 923, 1003
Sau96I GGNCC 2 cut(s) 221, 570
SchI GAGTC 5 cut(s) 4, 100, 224, 280, 1006
ScrFI CCNGG 2 cut(s) 40, 287
SduI GDGCHC 2 cut(s) 708, 935
SfaNI GCATC 3 cut(s) 272, 567, 667
Sfr274I CTCGAG 1 cut(s) 707
SinI GGWCC 1 cut(s) 570
SlaI CTCGAG 1 cut(s) 707
SmlI CTYRAG 2 cut(s) 707, 1022
SmoI CTYRAG 2 cut(s) 707, 1022
SphI GCATGC 1 cut(s) 584
Sse9I AATT 9 cut(s) 169, 200, 423, 487, 641, 840, 968, 1040, 1045
SseBI AGGCCT 1 cut(s) 43
SsiI CCGC 2 cut(s) 183, 398
SspMI CTAG 3 cut(s) 527, 669, 963
SstI GAGCTC 2 cut(s) 708, 935
StuI AGGCCT 1 cut(s) 43
StyD4I CCNGG 2 cut(s) 38, 285
StyI CCWWGG 2 cut(s) 105, 752
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 1 cut(s) 629
TaqI TCGA 7 cut(s) 8, 62, 78, 237, 665, 708, 938
TasI AATT 9 cut(s) 169, 200, 423, 487, 641, 840, 968, 1040, 1045
TfiI GAWTC 4 cut(s) 64, 779, 851, 890
Tru1I TTAA 3 cut(s) 204, 462, 839
Tru9I TTAA 3 cut(s) 204, 462, 839
TseI GCWGC 2 cut(s) 608, 655
TspDTI ATGAA 2 cut(s) 232, 740
TspGWI ACGGA 2 cut(s) 142, 551
VpaK11BI GGWCC 1 cut(s) 570
VspI ATTAAT 1 cut(s) 462
XapI RAATTY 3 cut(s) 487, 641, 1045
XceI RCATGY 3 cut(s) 407, 526, 584
XhoI CTCGAG 1 cut(s) 707
XspI CTAG 3 cut(s) 527, 669, 963
Zsp2I ATGCAT 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.