Rmu_sc0006845.1_g000006

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006845.1
OG0015022
Physical Location & Seq
Forward (+)
45149 .. 46324
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1176 bp
atgctctcattccggctatacgccgccgtttcgttcctcttcagtgtctccctcctcttccctcccttttgcattgggattcgctccttcccgacccgcgccatcgacgcctccggggacggcgcttccgacgacgcttccgcggcggcggcctggtcgcgattctccgaggcgccggattatcgtaacggagcggaatgcgccacgtcgtttaaccgcgagatggtgtcgtcgtgcgacgcgtcgttggtccacatcgcgatgactcttgactcggagtatctccggggctccgtcgccgccgtccactcggttctgaagcacgcttcttgccccgaaaacgtgttctttcacttcatcgcggccgagttcgacccggccagcccccgggtcctgacccaactcgtccgatccactttcccctccctcaatttcaaggtctatattttccgggaggacaccgtcatcaacctaatctccacttcaatccgggtcgccctggaaaacccgcttaactacgcccggaactacttgggcgacatcttgggccggtgcgtggagcgggtcatctacttggactccgacgtcctcgtagtcgacgacattcacaagctctggaatatctccctaaccgggacgcgggtcatcggagccccggagtactgccacgccaacttcaccaagtacttcaccgacgggttctggtccgacccggttctctcccgggtgttcgcgacccggagcccctgctacttcaacaccggcgtcatggtcatggacctagtccgatggcgggaaggaaacttccggaagaagatcgagaactggatggagttgcagaggaagcgaaggatttacgatctgggttctctcccgccgtttttgcttgtctttgccggaaatgtggaggccatagatcaccggtggaaccagcacggcctcggcggcgacaatgtcagaggcagctgccggtctctgcatcctgggccggtttctttgctccattggagcggaaaaggcaagccgtgggtgagactggagtcgaagaaggcttgccctctggaccatgtttgggagccttatgatctctacaagcaccgcaacgttgcaaagtatcagtctttttcatcaatttctgcttctacattgattgggttttcgagctatttgtcttga

Protein Analysis

391

Amino Acids

44.06

Weight (kDa)

8.31

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 85 - 345 1.1e-54 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015022)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70090 AT1G70090
fragaria_vesca FvH4_4g35260
prunus_persica Prupe.1G262000_v2.0.a1
pyrus_communis pycom13g07340 pycom16g07300
rosa_chinensis RchiOBHm_Chr4g0444871
rosa_laevigata RLG00000005793
rosa_multiflora Rmu_sc0006845.1_g000006
rosa_roxburghii Rroxscaffold_5G00385360
rosa_rugosa Rorug04G0355800
rosa_samantha Rh4AG417300 Rh4BG429100 Rh4CG443800 Rh4DG425000
rosa_wichuraiana Rw4G035770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 584
AatII GACGTC 1 cut(s) 588
AccB1I GGYRCC 1 cut(s) 172
AccBSI CCGCTC 3 cut(s) 194, 562, 1011
AccI GTMKAC 1 cut(s) 597
AccII CGCG 9 cut(s) 99, 143, 160, 219, 242, 260, 362, 640, 734
AccIII TCCGGA 1 cut(s) 807
AclI AACGTT 1 cut(s) 1104
AclWI GGATC 1 cut(s) 405
AcoI YGGCCR 2 cut(s) 363, 378
AcuI CTGAAG 2 cut(s) 25, 338
AcyI GRCGYC 4 cut(s) 108, 173, 585, 765
AfaI GTAC 2 cut(s) 662, 686
AfiI CCNNNNNNNGG 7 cut(s) 223, 387, 556, 633, 639, 793, 1072
AflIII ACRYGT 2 cut(s) 240, 342
AgeI ACCGGT 1 cut(s) 921
AgsI TTSAA 3 cut(s) 436, 486, 757
AjiI CACGTC 1 cut(s) 207
AjnI CCWGG 3 cut(s) 152, 498, 982
AluBI AGCT 3 cut(s) 613, 966, 1164
AluI AGCT 3 cut(s) 613, 966, 1164
Alw26I GTCTC 3 cut(s) 52, 978, 1027
AlwI GGATC 1 cut(s) 405
Ama87I CYCGRG 2 cut(s) 387, 723
Aor13HI TCCGGA 1 cut(s) 807
AoxI GGCC 7 cut(s) 150, 363, 378, 547, 909, 937, 986
ApeKI GCWGC 2 cut(s) 963, 966
ArsI GACNNNNNNTTYG 2 cut(s) 1103, 1135
AsiGI ACCGGT 1 cut(s) 921
AspLEI GCGC 4 cut(s) 101, 125, 175, 203
AspS9I GGNCC 7 cut(s) 250, 391, 547, 705, 778, 986, 1063
AsuHPI GGTGA 4 cut(s) 670, 682, 911, 1042
AvaI CYCGRG 2 cut(s) 387, 723
AvaII GGWCC 5 cut(s) 250, 391, 705, 778, 1063
BanI GGYRCC 1 cut(s) 172
BanII GRGCYC 3 cut(s) 293, 655, 746
BbvI GCAGC 2 cut(s) 953, 975
BccI CCATC 4 cut(s) 110, 217, 783, 823
BceAI ACGGC 6 cut(s) 11, 136, 287, 862, 952, 1009
BciT130I CCWGG 3 cut(s) 154, 500, 984
BcoDI GTCTC 3 cut(s) 52, 978, 1027
BfaI CTAG 1 cut(s) 782
BfoI RGCGCY 2 cut(s) 126, 176
BglI GCCNNNNNGGC 1 cut(s) 945
BisI GCNGC 9 cut(s) 24, 144, 147, 150, 300, 363, 946, 964, 967
BlsI GCNGC 9 cut(s) 25, 145, 148, 151, 301, 364, 947, 965, 968
BmcAI AGTACT 2 cut(s) 662, 686
Bme18I GGWCC 5 cut(s) 250, 391, 705, 778, 1063
BmeT110I CYCGRG 2 cut(s) 387, 723
BmgBI CACGTC 1 cut(s) 207
BmgT120I GGNCC 7 cut(s) 250, 391, 547, 705, 778, 986, 1063
BmiI GGNNCC 7 cut(s) 174, 292, 392, 652, 743, 929, 1077
BmsI GCATC 1 cut(s) 988
BoxI GACNNNNGTC 2 cut(s) 641, 1039
BpmI CTGGAG 1 cut(s) 1058
BsaHI GRCGYC 4 cut(s) 108, 173, 585, 765
BsaI GGTCTC 1 cut(s) 978
BsaWI WCCGGW 2 cut(s) 807, 921
BsaXI ACNNNNNCTCC 4 cut(s) 461, 491, 563, 593
Bsc4I CCNNNNNNNGG 7 cut(s) 223, 387, 556, 633, 639, 793, 1072
Bse118I RCCGGY 5 cut(s) 549, 761, 921, 969, 988
Bse1I ACTGG 2 cut(s) 830, 1041
BseAI TCCGGA 1 cut(s) 807
BseBI CCWGG 3 cut(s) 154, 500, 984
BseGI GGATG 2 cut(s) 834, 979
BseLI CCNNNNNNNGG 7 cut(s) 223, 387, 556, 633, 639, 793, 1072
BseNI ACTGG 2 cut(s) 830, 1041
BseRI GAGGAG 1 cut(s) 44
BseX3I CGGCCG 1 cut(s) 363
BseXI GCAGC 2 cut(s) 953, 975
Bsh1236I CGCG 9 cut(s) 99, 143, 160, 219, 242, 260, 362, 640, 734
Bsh1285I CGRYCG 1 cut(s) 366
BshFI GGCC 7 cut(s) 152, 365, 380, 549, 911, 939, 988
BshNI GGYRCC 1 cut(s) 172
BshTI ACCGGT 1 cut(s) 921
BsiEI CGRYCG 1 cut(s) 366
BsiHKCI CYCGRG 2 cut(s) 387, 723
BslFI GGGAC 2 cut(s) 131, 649
BslI CCNNNNNNNGG 7 cut(s) 223, 387, 556, 633, 639, 793, 1072
BsmAI GTCTC 3 cut(s) 52, 978, 1027
BsmFI GGGAC 2 cut(s) 131, 649
BsmI GAATGC 1 cut(s) 203
BsnI GGCC 7 cut(s) 152, 365, 380, 549, 911, 939, 988
Bso31I GGTCTC 1 cut(s) 978
BsoBI CYCGRG 2 cut(s) 387, 723
Bsp1286I GDGCHC 3 cut(s) 293, 655, 746
Bsp13I TCCGGA 1 cut(s) 807
Bsp143I GATC 5 cut(s) 410, 816, 859, 916, 1084
Bsp68I TCGCGA 3 cut(s) 160, 260, 734
BspANI GGCC 7 cut(s) 152, 365, 380, 549, 911, 939, 988
BspEI TCCGGA 1 cut(s) 807
BspFNI CGCG 9 cut(s) 99, 143, 160, 219, 242, 260, 362, 640, 734
BspLI GGNNCC 7 cut(s) 174, 292, 392, 652, 743, 929, 1077
BspPI GGATC 1 cut(s) 405
BspT107I GGYRCC 1 cut(s) 172
BspTNI GGTCTC 1 cut(s) 978
BsrBI CCGCTC 3 cut(s) 194, 562, 1011
BsrFI RCCGGY 5 cut(s) 549, 761, 921, 969, 988
BsrI ACTGG 2 cut(s) 830, 1041
BssAI RCCGGY 5 cut(s) 549, 761, 921, 969, 988
BssMI GATC 5 cut(s) 410, 816, 859, 916, 1084
BssNI GRCGYC 4 cut(s) 108, 173, 585, 765
Bst2UI CCWGG 3 cut(s) 154, 500, 984
Bst4CI ACNGT 1 cut(s) 463
Bst6I CTCTTC 2 cut(s) 44, 62
BstACI GRCGYC 4 cut(s) 108, 173, 585, 765
BstC8I GCNNGC 4 cut(s) 324, 382, 1022, 1054
BstDSI CCRYGG 2 cut(s) 141, 1025
BstF5I GGATG 2 cut(s) 834, 979
BstFNI CGCG 9 cut(s) 99, 143, 160, 219, 242, 260, 362, 640, 734
BstH2I RGCGCY 2 cut(s) 126, 176
BstHHI GCGC 4 cut(s) 101, 125, 175, 203
BstKTI GATC 5 cut(s) 413, 819, 862, 919, 1087
BstMAI GTCTC 3 cut(s) 52, 978, 1027
BstMBI GATC 5 cut(s) 410, 816, 859, 916, 1084
BstMCI CGRYCG 1 cut(s) 366
BstMWI GCNNNNNNNGC 9 cut(s) 107, 143, 149, 200, 844, 883, 945, 985, 1017
BstNI CCWGG 3 cut(s) 154, 500, 984
BstPAI GACNNNNGTC 2 cut(s) 641, 1039
BstUI CGCG 9 cut(s) 99, 143, 160, 219, 242, 260, 362, 640, 734
BstV1I GCAGC 2 cut(s) 953, 975
BstZI CGGCCG 1 cut(s) 363
BsuRI GGCC 7 cut(s) 152, 365, 380, 549, 911, 939, 988
BtgI CCRYGG 2 cut(s) 141, 1025
BtgZI GCGATG 3 cut(s) 241, 275, 343
BtrI CACGTC 1 cut(s) 207
BtsCI GGATG 2 cut(s) 834, 979
BtsIMutI CAGTG 1 cut(s) 49
BtuMI TCGCGA 3 cut(s) 160, 260, 734
Cac8I GCNNGC 4 cut(s) 324, 382, 1022, 1054
CfoI GCGC 4 cut(s) 101, 125, 175, 203
Cfr10I RCCGGY 5 cut(s) 549, 761, 921, 969, 988
Cfr13I GGNCC 7 cut(s) 250, 391, 547, 705, 778, 986, 1063
Cfr42I CCGCGG 1 cut(s) 144
Cfr9I CCCGGG 2 cut(s) 387, 723
CseI GACGC 6 cut(s) 116, 143, 231, 248, 646, 754
Csp6I GTAC 2 cut(s) 661, 685
CspAI ACCGGT 1 cut(s) 921
CviAII CATG 3 cut(s) 769, 775, 1067
CviQI GTAC 2 cut(s) 661, 685
DinI GGCGCC 1 cut(s) 174
DpnI GATC 5 cut(s) 412, 818, 861, 918, 1086
DpnII GATC 5 cut(s) 410, 816, 859, 916, 1084
DrdI GACNNNNNNGTC 1 cut(s) 584
DseDI GACNNNNNNGTC 1 cut(s) 584
EaeI YGGCCR 2 cut(s) 363, 378
EagI CGGCCG 1 cut(s) 363
Eam1104I CTCTTC 2 cut(s) 44, 62
EarI CTCTTC 2 cut(s) 44, 62
EclXI CGGCCG 1 cut(s) 363
Eco24I GRGCYC 3 cut(s) 293, 655, 746
Eco31I GGTCTC 1 cut(s) 978
Eco47I GGWCC 5 cut(s) 250, 391, 705, 778, 1063
Eco52I CGGCCG 1 cut(s) 363
Eco57I CTGAAG 2 cut(s) 25, 338
Eco88I CYCGRG 2 cut(s) 387, 723
EcoO109I RGGNCCY 1 cut(s) 391
EcoRII CCWGG 3 cut(s) 152, 498, 982
EcoT38I GRGCYC 3 cut(s) 293, 655, 746
EgeI GGCGCC 1 cut(s) 174
EheI GGCGCC 1 cut(s) 174
FaeI CATG 3 cut(s) 772, 778, 1070
FaiI YATR 7 cut(s) 19, 444, 770, 776, 914, 1068, 1083
FaqI GGGAC 2 cut(s) 131, 649
FatI CATG 3 cut(s) 768, 774, 1066
FauI CCCGC 6 cut(s) 104, 516, 555, 633, 786, 882
FblI GTMKAC 1 cut(s) 597
Fnu4HI GCNGC 9 cut(s) 24, 144, 147, 150, 300, 363, 946, 964, 967
FokI GGATG 2 cut(s) 841, 966
FriOI GRGCYC 3 cut(s) 293, 655, 746
Fsp4HI GCNGC 9 cut(s) 24, 144, 147, 150, 300, 363, 946, 964, 967
FspBI CTAG 1 cut(s) 782
GlaI GCGC 4 cut(s) 100, 124, 174, 202
GluI GCNGC 9 cut(s) 24, 144, 147, 150, 300, 363, 946, 964, 967
GsuI CTGGAG 1 cut(s) 1058
HaeII RGCGCY 2 cut(s) 126, 176
HaeIII GGCC 7 cut(s) 152, 365, 380, 549, 911, 939, 988
HgaI GACGC 6 cut(s) 116, 143, 231, 248, 646, 754
HhaI GCGC 4 cut(s) 101, 125, 175, 203
Hin1I GRCGYC 4 cut(s) 108, 173, 585, 765
Hin1II CATG 3 cut(s) 772, 778, 1070
Hin6I GCGC 4 cut(s) 99, 123, 173, 201
HinP1I GCGC 4 cut(s) 99, 123, 173, 201
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HinfI GANTC 6 cut(s) 79, 162, 265, 272, 578, 1040
HphI GGTGA 4 cut(s) 670, 682, 911, 1042
Hpy166II GTNNAC 3 cut(s) 253, 307, 598
Hpy8I GTNNAC 3 cut(s) 253, 307, 598
HpyAV CCTTC 4 cut(s) 97, 791, 843, 1042
HpyCH4III ACNGT 1 cut(s) 463
HpyCH4IV ACGT 4 cut(s) 206, 342, 585, 1104
HpyCH4V TGCA 4 cut(s) 72, 838, 979, 1109
HpyF10VI GCNNNNNNNGC 9 cut(s) 107, 143, 149, 200, 844, 883, 945, 985, 1017
HpySE526I ACGT 4 cut(s) 206, 342, 585, 1104
Hsp92I GRCGYC 4 cut(s) 108, 173, 585, 765
Hsp92II CATG 3 cut(s) 772, 778, 1070
HspAI GCGC 4 cut(s) 99, 123, 173, 201
KasI GGCGCC 1 cut(s) 172
Kpn2I TCCGGA 1 cut(s) 807
KspI CCGCGG 1 cut(s) 144
Kzo9I GATC 5 cut(s) 410, 816, 859, 916, 1084
LmnI GCTCC 9 cut(s) 89, 191, 296, 559, 650, 741, 1005, 1008, 1075
Lsp1109I GCAGC 2 cut(s) 953, 975
LweI GCATC 1 cut(s) 988
MaeI CTAG 1 cut(s) 782
MaeII ACGT 4 cut(s) 206, 342, 585, 1104
MaeIII GTNAC 1 cut(s) 185
MalI GATC 5 cut(s) 412, 818, 861, 918, 1086
MbiI CCGCTC 3 cut(s) 194, 562, 1011
MboI GATC 5 cut(s) 410, 816, 859, 916, 1084
MboII GAAGA 5 cut(s) 31, 49, 823, 826, 1057
MhlI GDGCHC 3 cut(s) 293, 655, 746
MluCI AATT 2 cut(s) 430, 1131
MluI ACGCGT 1 cut(s) 240
Mly113I GGCGCC 1 cut(s) 173
MlyI GAGTC 4 cut(s) 259, 266, 572, 1049
MmeI TCCRAC 3 cut(s) 153, 606, 732
MroI TCCGGA 1 cut(s) 807
MseI TTAA 2 cut(s) 213, 513
MslI CAYNNNNRTG 2 cut(s) 260, 773
MspA1I CMGCKG 2 cut(s) 143, 966
Mva1269I GAATGC 1 cut(s) 203
MvaI CCWGG 3 cut(s) 154, 500, 984
MvnI CGCG 9 cut(s) 99, 143, 160, 219, 242, 260, 362, 640, 734
MwoI GCNNNNNNNGC 9 cut(s) 107, 143, 149, 200, 844, 883, 945, 985, 1017
NarI GGCGCC 1 cut(s) 173
NdeII GATC 5 cut(s) 410, 816, 859, 916, 1084
NlaIII CATG 3 cut(s) 772, 778, 1070
NlaIV GGNNCC 7 cut(s) 174, 292, 392, 652, 743, 929, 1077
NmeAIII GCCGAG 2 cut(s) 391, 921
NruI TCGCGA 3 cut(s) 160, 260, 734
PcsI WCGNNNNNNNCGW 3 cut(s) 126, 239, 597
PctI GAATGC 1 cut(s) 203
PfeI GAWTC 2 cut(s) 79, 162
PflFI GACNNNGTC 3 cut(s) 461, 782, 953
PfoI TCCNGGA 1 cut(s) 450
PinAI ACCGGT 1 cut(s) 921
PkrI GCNGC 9 cut(s) 25, 145, 148, 151, 301, 364, 947, 965, 968
PleI GAGTC 4 cut(s) 259, 266, 572, 1048
PluTI GGCGCC 1 cut(s) 176
PpsI GAGTC 4 cut(s) 259, 266, 572, 1048
PpuMI RGGWCCY 1 cut(s) 391
PshAI GACNNNNGTC 2 cut(s) 641, 1039
Psp1406I AACGTT 1 cut(s) 1104
Psp5II RGGWCCY 1 cut(s) 391
Psp6I CCWGG 3 cut(s) 152, 498, 982
PspGI CCWGG 3 cut(s) 152, 498, 982
PspN4I GGNNCC 7 cut(s) 174, 292, 392, 652, 743, 929, 1077
PspPI GGNCC 7 cut(s) 250, 391, 547, 705, 778, 986, 1063
PspPPI RGGWCCY 1 cut(s) 391
PsyI GACNNNGTC 3 cut(s) 461, 782, 953
PvuII CAGCTG 1 cut(s) 966
RruI TCGCGA 3 cut(s) 160, 260, 734
RsaI GTAC 2 cut(s) 662, 686
RsaNI GTAC 2 cut(s) 661, 685
RseI CAYNNNNRTG 2 cut(s) 260, 773
SacII CCGCGG 1 cut(s) 144
SalI GTCGAC 1 cut(s) 596
SaqAI TTAA 2 cut(s) 213, 513
SatI GCNGC 9 cut(s) 24, 144, 147, 150, 300, 363, 946, 964, 967
Sau3AI GATC 5 cut(s) 410, 816, 859, 916, 1084
Sau96I GGNCC 7 cut(s) 250, 391, 547, 705, 778, 986, 1063
ScaI AGTACT 2 cut(s) 662, 686
SchI GAGTC 4 cut(s) 259, 266, 572, 1049
SduI GDGCHC 3 cut(s) 293, 655, 746
SfaNI GCATC 1 cut(s) 988
SfoI GGCGCC 1 cut(s) 174
Sfr303I CCGCGG 1 cut(s) 144
SgrAI CRCCGGYG 2 cut(s) 761, 921
SgrBI CCGCGG 1 cut(s) 144
SinI GGWCC 5 cut(s) 250, 391, 705, 778, 1063
SmaI CCCGGG 2 cut(s) 389, 725
SmiMI CAYNNNNRTG 2 cut(s) 260, 773
Sse9I AATT 2 cut(s) 430, 1131
SspDI GGCGCC 1 cut(s) 172
SspMI CTAG 1 cut(s) 782
TaaI ACNGT 1 cut(s) 463
TaiI ACGT 4 cut(s) 209, 345, 588, 1107
TaqI TCGA 6 cut(s) 105, 372, 597, 819, 1043, 1160
TasI AATT 2 cut(s) 430, 1131
TatI WGTACW 2 cut(s) 660, 684
TauI GCSGC 7 cut(s) 26, 146, 149, 152, 302, 365, 948
TfiI GAWTC 2 cut(s) 79, 162
Tru1I TTAA 2 cut(s) 213, 513
Tru9I TTAA 2 cut(s) 213, 513
TscAI CASTG 1 cut(s) 49
TseI GCWGC 2 cut(s) 963, 966
TspDTI ATGAA 2 cut(s) 346, 1116
TspGWI ACGGA 2 cut(s) 204, 283
TspMI CCCGGG 2 cut(s) 387, 723
TspRI CASTG 1 cut(s) 49
Tth111I GACNNNGTC 3 cut(s) 461, 782, 953
VpaK11BI GGWCC 5 cut(s) 250, 391, 705, 778, 1063
XmaI CCCGGG 2 cut(s) 387, 723
XmiI GTMKAC 1 cut(s) 597
XspI CTAG 1 cut(s) 782
ZraI GACGTC 1 cut(s) 586
ZrmI AGTACT 2 cut(s) 662, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.