Rmu_sc0006888.1_g000019

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006888.1
OG0019861
Physical Location & Seq
Reverse (-)
69866 .. 70345
480 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 480 bp
atgccatcgtcatcgacgaggtccgcaccagaacttcgccctgagcagcttatttccggcaaggaggacgctgctaacaacttcgctcgtggccatacaccaccagcaaagagatcgtcgatctctgcttggatcggatccggaagctcgccgacaactgcactgggcttcagggatttctggtcttcaatgtcgtcggtggtgataccgggtcgggtctcgagtcgcttctgctggaggctggagcgtttttctgtggactatgggaaaacggccgagcttgaattcgctgtgtatccttctcctcaggtttctacgtctgttgtagagccttgtaacagtgtcctctccactcattgtctacttgagcacaccgatgcgtctgttttgctcaataatgaggccatatacgacatctgccgccgatctctggacattgagcgtcccacttacaccaatctcaatcgcctcatctcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04145 ko04210 ko04530 ko04540 ko05130 map04145 map04210 map04530 map04540 map05130
Pfam Domains
Protein Families
Tubulin Tubulin_C

Protein Analysis

159

Amino Acids

17.54

Weight (kDa)

6.82

Isoelectric Point (pI)

60.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tubulin PF00091 82 - 140 1.1e-07 Tubulin/FtsZ family, GTPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019861)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0344731 RchiOBHm_Chr2g0112001 RchiOBHm_Chr2g0153431
rosa_laevigata RLG00000012506 RLG00000021609 RLG00000035396
rosa_multiflora Rmu_sc0006888.1_g000019

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 361
AccIII TCCGGA 1 cut(s) 140
AciI CCGC 2 cut(s) 24, 421
AclWI GGATC 3 cut(s) 132, 140, 145
AcoI YGGCCR 2 cut(s) 91, 273
AcsI RAATTY 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 430
AgsI TTSAA 2 cut(s) 189, 284
AluBI AGCT 3 cut(s) 49, 147, 280
AluI AGCT 3 cut(s) 49, 147, 280
Alw21I GWGCWC 1 cut(s) 372
Alw26I GTCTC 1 cut(s) 223
AlwI GGATC 3 cut(s) 132, 140, 145
Ama87I CYCGRG 1 cut(s) 220
Aor13HI TCCGGA 1 cut(s) 140
AoxI GGCC 3 cut(s) 91, 273, 402
ApeKI GCWGC 2 cut(s) 46, 71
ApoI RAATTY 1 cut(s) 284
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
AspS9I GGNCC 1 cut(s) 21
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 214
AvaI CYCGRG 1 cut(s) 220
AvaII GGWCC 1 cut(s) 21
AxyI CCTNAGG 1 cut(s) 306
BalI TGGCCA 1 cut(s) 93
BamHI GGATCC 1 cut(s) 137
BauI CACGAG 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 372
BbvI GCAGC 2 cut(s) 58, 58
BccI CCATC 1 cut(s) 13
BceAI ACGGC 1 cut(s) 288
BcgI CGANNNNNNTGC 2 cut(s) 96, 130
BciVI GTATCC 1 cut(s) 306
BcnI CCSGG 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 223
BfuI GTATCC 1 cut(s) 306
BisI GCNGC 3 cut(s) 47, 72, 421
BlsI GCNGC 3 cut(s) 48, 73, 422
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 21
BmeT110I CYCGRG 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 210
BmrI ACTGGG 1 cut(s) 173
BmsI GCATC 1 cut(s) 367
BmuI ACTGGG 1 cut(s) 173
BpiI GAAGAC 1 cut(s) 177
BpmI CTGGAG 2 cut(s) 256, 263
Bpu10I CCTNAGC 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 386
BpuMI CCSGG 1 cut(s) 210
BsaI GGTCTC 1 cut(s) 223
BsaWI WCCGGW 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse1I ACTGG 1 cut(s) 168
Bse21I CCTNAGG 1 cut(s) 306
BseAI TCCGGA 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 430
BseMII CTCAG 2 cut(s) 33, 320
BseNI ACTGG 1 cut(s) 168
BseRI GAGGAG 1 cut(s) 294
BseX3I CGGCCG 1 cut(s) 273
BseXI GCAGC 2 cut(s) 58, 58
BsgI GTGCAG 1 cut(s) 144
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 3 cut(s) 93, 275, 404
BsiEI CGRYCG 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 372
BsiHKCI CYCGRG 1 cut(s) 220
BsiSI CCGG 3 cut(s) 57, 141, 209
BslFI GGGAC 1 cut(s) 429
BslI CCNNNNNNNGG 1 cut(s) 430
BsmAI GTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 429
BsnI GGCC 3 cut(s) 93, 275, 404
Bso31I GGTCTC 1 cut(s) 223
BsoBI CYCGRG 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 372
Bsp13I TCCGGA 1 cut(s) 140
Bsp143I GATC 5 cut(s) 113, 120, 132, 137, 425
BspACI CCGC 2 cut(s) 24, 421
BspANI GGCC 3 cut(s) 93, 275, 404
BspCNI CTCAG 2 cut(s) 34, 319
BspEI TCCGGA 1 cut(s) 140
BspLI GGNNCC 1 cut(s) 139
BspPI GGATC 3 cut(s) 132, 140, 145
BspTNI GGTCTC 1 cut(s) 223
BsrI ACTGG 1 cut(s) 168
BssMI GATC 5 cut(s) 113, 120, 132, 137, 425
BssSI CACGAG 1 cut(s) 87
Bst2BI CACGAG 1 cut(s) 87
Bst4CI ACNGT 1 cut(s) 341
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 3 cut(s) 42, 306, 477
BstKTI GATC 5 cut(s) 116, 123, 135, 140, 428
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 5 cut(s) 113, 120, 132, 137, 425
BstMCI CGRYCG 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 208
BstV1I GCAGC 2 cut(s) 58, 58
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 137
BstYI RGATCY 1 cut(s) 137
BstZI CGGCCG 1 cut(s) 273
Bsu36I CCTNAGG 1 cut(s) 306
BsuI GTATCC 1 cut(s) 306
BsuRI GGCC 3 cut(s) 93, 275, 404
BtsIMutI CAGTG 2 cut(s) 161, 346
Cac8I GCNNGC 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 21
CseI GACGC 3 cut(s) 77, 369, 431
CviJI RGCY 9 cut(s) 49, 93, 147, 168, 241, 275, 280, 331, 404
CviKI_1 RGCY 9 cut(s) 49, 93, 147, 168, 241, 275, 280, 331, 404
DdeI CTNAG 3 cut(s) 42, 306, 477
DpnI GATC 5 cut(s) 115, 122, 134, 139, 427
DpnII GATC 5 cut(s) 113, 120, 132, 137, 425
EaeI YGGCCR 2 cut(s) 91, 273
EagI CGGCCG 1 cut(s) 273
EclXI CGGCCG 1 cut(s) 273
Eco31I GGTCTC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 21
Eco52I CGGCCG 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 154
Eco81I CCTNAGG 1 cut(s) 306
Eco88I CYCGRG 1 cut(s) 220
EcoRI GAATTC 1 cut(s) 284
FaiI YATR 4 cut(s) 96, 264, 407, 409
FaqI GGGAC 1 cut(s) 429
FblI GTMKAC 1 cut(s) 361
Fnu4HI GCNGC 3 cut(s) 47, 72, 421
Fsp4HI GCNGC 3 cut(s) 47, 72, 421
GluI GCNGC 3 cut(s) 47, 72, 421
GsuI CTGGAG 2 cut(s) 256, 263
HaeIII GGCC 3 cut(s) 93, 275, 404
HapII CCGG 3 cut(s) 57, 141, 209
HgaI GACGC 3 cut(s) 77, 369, 431
HinfI GANTC 1 cut(s) 223
HpaII CCGG 3 cut(s) 57, 141, 209
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 2 cut(s) 259, 362
Hpy188I TCNGA 1 cut(s) 137
Hpy188III TCNNGA 3 cut(s) 141, 220, 431
Hpy8I GTNNAC 2 cut(s) 259, 362
Hpy99I CGWCG 3 cut(s) 19, 121, 199
HpyAV CCTTC 1 cut(s) 309
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 1 cut(s) 161
HpyF3I CTNAG 3 cut(s) 42, 306, 477
HpySE526I ACGT 1 cut(s) 317
Kpn2I TCCGGA 1 cut(s) 140
Kzo9I GATC 5 cut(s) 113, 120, 132, 137, 425
LmnI GCTCC 1 cut(s) 244
Lsp1109I GCAGC 2 cut(s) 58, 58
LweI GCATC 1 cut(s) 367
MaeII ACGT 1 cut(s) 317
MaeIII GTNAC 1 cut(s) 335
MalI GATC 5 cut(s) 115, 122, 134, 139, 427
MboI GATC 5 cut(s) 113, 120, 132, 137, 425
MboII GAAGA 1 cut(s) 177
MflI RGATCY 1 cut(s) 137
MhlI GDGCHC 1 cut(s) 372
MlsI TGGCCA 1 cut(s) 93
MluCI AATT 1 cut(s) 284
MluNI TGGCCA 1 cut(s) 93
MlyI GAGTC 1 cut(s) 232
MnlI CCTC 7 cut(s) 12, 58, 231, 315, 356, 394, 479
Mox20I TGGCCA 1 cut(s) 93
MroI TCCGGA 1 cut(s) 140
MscI TGGCCA 1 cut(s) 93
MslI CAYNNNNRTG 1 cut(s) 375
Msp20I TGGCCA 1 cut(s) 93
MspI CCGG 3 cut(s) 57, 141, 209
MspR9I CCNGG 1 cut(s) 210
NciI CCSGG 1 cut(s) 210
NdeII GATC 5 cut(s) 113, 120, 132, 137, 425
NlaIV GGNNCC 1 cut(s) 139
NmeAIII GCCGAG 1 cut(s) 301
PaeR7I CTCGAG 1 cut(s) 220
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PflFI GACNNNGTC 1 cut(s) 19
PkrI GCNGC 3 cut(s) 48, 73, 422
PleI GAGTC 1 cut(s) 231
PpsI GAGTC 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 1 cut(s) 21
PsuI RGATCY 1 cut(s) 137
PsyI GACNNNGTC 1 cut(s) 19
RseI CAYNNNNRTG 1 cut(s) 375
SatI GCNGC 3 cut(s) 47, 72, 421
Sau3AI GATC 5 cut(s) 113, 120, 132, 137, 425
Sau96I GGNCC 1 cut(s) 21
SchI GAGTC 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 1 cut(s) 372
SetI ASST 6 cut(s) 23, 51, 149, 282, 312, 320
SfaNI GCATC 1 cut(s) 367
Sfr274I CTCGAG 1 cut(s) 220
SinI GGWCC 1 cut(s) 21
SlaI CTCGAG 1 cut(s) 220
SmiMI CAYNNNNRTG 1 cut(s) 375
SmlI CTYRAG 2 cut(s) 220, 365
SmoI CTYRAG 2 cut(s) 220, 365
Sse9I AATT 1 cut(s) 284
SsiI CCGC 2 cut(s) 24, 421
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 1 cut(s) 341
TaiI ACGT 1 cut(s) 320
TaqI TCGA 3 cut(s) 14, 119, 221
TasI AATT 1 cut(s) 284
TauI GCSGC 1 cut(s) 423
TscAI CASTG 2 cut(s) 168, 346
TseI GCWGC 2 cut(s) 46, 71
TspRI CASTG 2 cut(s) 168, 346
Tth111I GACNNNGTC 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 21
XapI RAATTY 1 cut(s) 284
XhoI CTCGAG 1 cut(s) 220
XmiI GTMKAC 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.