Rmu_sc0006914.1_g000001

Protein of unknown function (DUF1005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006914.1
OG0019473
Physical Location & Seq
Reverse (-)
867 .. 2582
1716 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 690 bp
atgtaccagaatggttggattgatattggtgggaagaagaacaggtccgggtcggctcaatcgcagttcttcttgagcgtctgggccgaacctgacccaagattcttgttcaagttcgacagagagcccaagtgtagcccacaagtttttcaggttcaggaaaatgtgaagcagccgattttcacttgcaagtttgggttcagaaacaccaacgatatgcaatcacagttagtttttatcgttgggttcagaacactaaaacaagaactcgttggagctgctgggttgggtgaacgtccaagatcaaatgcaacactaggacagagatccatcgatgttgaaggaggctctgctagggtttactcgaccgcggcggctttcgagaaaattctcaaacgtgactgcaaaggatcgatcccgtcgccgtttaggctgggtgacagcttgatggaggattttggttttggtaccgacggtgactgtcaggatgccggtggtcgcggtgatctagtttggcccttgaccgatggtgaaactggcggctggggtggttttgatgtcctaaaatgggagtgggtctggaagcggtttggtcctggtgacggtgcagcctcttacacggtggtggtgctgatggtgtatacgatcctggggtggagactttggggtgggtgtactctcagcaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1005

Protein Analysis

229

Amino Acids

25.39

Weight (kDa)

7.55

Isoelectric Point (pI)

35.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1005 PF06219 2 - 77 4.4e-29 Protein of unknown function (DUF1005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019473)

Species Orthologous Gene IDs
rosa_laevigata RLG00000010754
rosa_multiflora Rmu_sc0006453.1_g000042 Rmu_sc0006914.1_g000001
rosa_samantha Rh4AG097600 Rh4CG106800 Rh6AG466200 Rh6BG434900 Rh6CG480900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 467
AccB1I GGYRCC 1 cut(s) 467
AccI GTMKAC 1 cut(s) 641
AccII CGCG 2 cut(s) 371, 501
AciI CCGC 6 cut(s) 369, 371, 374, 501, 540, 586
AclWI GGATC 4 cut(s) 321, 409, 418, 640
AcsI RAATTY 1 cut(s) 387
AfaI GTAC 3 cut(s) 5, 469, 676
AfiI CCNNNNNNNGG 2 cut(s) 568, 602
AgsI TTSAA 2 cut(s) 112, 341
AjnI CCWGG 2 cut(s) 595, 648
AleI CACNNNNGTG 1 cut(s) 623
AluBI AGCT 2 cut(s) 278, 444
AluI AGCT 2 cut(s) 278, 444
Alw26I GTCTC 1 cut(s) 652
AlwI GGATC 4 cut(s) 321, 409, 418, 640
AoxI GGCC 2 cut(s) 84, 515
ApeKI GCWGC 3 cut(s) 172, 278, 608
ApoI RAATTY 1 cut(s) 387
Asp718I GGTACC 1 cut(s) 467
AspS9I GGNCC 4 cut(s) 45, 84, 516, 593
AsuC2I CCSGG 1 cut(s) 49
AsuHPI GGTGA 6 cut(s) 302, 449, 488, 515, 542, 611
AvaII GGWCC 2 cut(s) 45, 593
BanI GGYRCC 1 cut(s) 467
BanII GRGCYC 1 cut(s) 129
BbvI GCAGC 3 cut(s) 184, 265, 620
BccI CCATC 4 cut(s) 338, 442, 521, 628
BceAI ACGGC 1 cut(s) 409
BciT130I CCWGG 2 cut(s) 597, 650
BcnI CCSGG 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 652
BfaI CTAG 4 cut(s) 317, 354, 509, 688
BglI GCCNNNNNGGC 1 cut(s) 430
BisI GCNGC 6 cut(s) 173, 279, 372, 375, 541, 609
BlsI GCNGC 6 cut(s) 174, 280, 373, 376, 542, 610
Bme1390I CCNGG 3 cut(s) 49, 597, 650
Bme18I GGWCC 2 cut(s) 45, 593
BmgT120I GGNCC 4 cut(s) 45, 84, 516, 593
BmiI GGNNCC 1 cut(s) 469
BmrFI CCNGG 3 cut(s) 49, 597, 650
BmsI GCATC 1 cut(s) 478
BpuEI CTTGAG 1 cut(s) 94
BpuMI CCSGG 1 cut(s) 49
Bsa29I ATCGAT 2 cut(s) 333, 413
BsaJI CCNNGG 2 cut(s) 369, 649
Bsc4I CCNNNNNNNGG 2 cut(s) 568, 602
Bse118I RCCGGY 1 cut(s) 491
Bse1I ACTGG 1 cut(s) 541
BseBI CCWGG 2 cut(s) 597, 650
BseCI ATCGAT 2 cut(s) 333, 413
BseDI CCNNGG 2 cut(s) 369, 649
BseGI GGATG 1 cut(s) 493
BseLI CCNNNNNNNGG 2 cut(s) 568, 602
BseNI ACTGG 1 cut(s) 541
BseXI GCAGC 3 cut(s) 184, 265, 620
BseYI CCCAGC 3 cut(s) 281, 433, 543
BsgI GTGCAG 1 cut(s) 627
Bsh1236I CGCG 2 cut(s) 371, 501
Bsh1285I CGRYCG 1 cut(s) 369
BshFI GGCC 2 cut(s) 86, 517
BshNI GGYRCC 1 cut(s) 467
BshVI ATCGAT 2 cut(s) 333, 413
BsiEI CGRYCG 1 cut(s) 369
BsiSI CCGG 2 cut(s) 48, 492
BslI CCNNNNNNNGG 2 cut(s) 568, 602
BsmAI GTCTC 1 cut(s) 652
BsnI GGCC 2 cut(s) 86, 517
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 6 cut(s) 302, 326, 410, 414, 505, 645
BspACI CCGC 6 cut(s) 369, 371, 374, 501, 540, 586
BspANI GGCC 2 cut(s) 86, 517
BspDI ATCGAT 2 cut(s) 333, 413
BspFNI CGCG 2 cut(s) 371, 501
BspLI GGNNCC 1 cut(s) 469
BspPI GGATC 4 cut(s) 321, 409, 418, 640
BspT107I GGYRCC 1 cut(s) 467
BsrFI RCCGGY 1 cut(s) 491
BsrI ACTGG 1 cut(s) 541
BssAI RCCGGY 1 cut(s) 491
BssECI CCNNGG 2 cut(s) 369, 649
BssMI GATC 6 cut(s) 302, 326, 410, 414, 505, 645
BssNAI GTATAC 1 cut(s) 642
Bst1107I GTATAC 1 cut(s) 642
Bst2UI CCWGG 2 cut(s) 597, 650
Bst4CI ACNGT 5 cut(s) 228, 476, 482, 605, 622
BstDEI CTNAG 1 cut(s) 680
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 1 cut(s) 493
BstFNI CGCG 2 cut(s) 371, 501
BstKTI GATC 6 cut(s) 305, 329, 413, 417, 508, 648
BstMAI GTCTC 1 cut(s) 652
BstMBI GATC 6 cut(s) 302, 326, 410, 414, 505, 645
BstMCI CGRYCG 1 cut(s) 369
BstMWI GCNNNNNNNGC 1 cut(s) 430
BstNI CCWGG 2 cut(s) 597, 650
BstSCI CCNGG 3 cut(s) 47, 595, 648
BstUI CGCG 2 cut(s) 371, 501
BstV1I GCAGC 3 cut(s) 184, 265, 620
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
BstZ17I GTATAC 1 cut(s) 642
Bsu15I ATCGAT 2 cut(s) 333, 413
BsuRI GGCC 2 cut(s) 86, 517
BsuTUI ATCGAT 2 cut(s) 333, 413
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 1 cut(s) 493
Cfr10I RCCGGY 1 cut(s) 491
Cfr13I GGNCC 4 cut(s) 45, 84, 516, 593
Cfr42I CCGCGG 1 cut(s) 372
ClaI ATCGAT 2 cut(s) 333, 413
CseI GACGC 1 cut(s) 67
Csp6I GTAC 3 cut(s) 4, 468, 675
CviQI GTAC 3 cut(s) 4, 468, 675
DdeI CTNAG 1 cut(s) 680
DpnI GATC 6 cut(s) 304, 328, 412, 416, 507, 647
DpnII GATC 6 cut(s) 302, 326, 410, 414, 505, 645
Eco24I GRGCYC 1 cut(s) 129
Eco47I GGWCC 2 cut(s) 45, 593
EcoRII CCWGG 2 cut(s) 595, 648
EcoT38I GRGCYC 1 cut(s) 129
FaiI YATR 2 cut(s) 218, 642
FblI GTMKAC 1 cut(s) 641
Fnu4HI GCNGC 6 cut(s) 173, 279, 372, 375, 541, 609
FokI GGATG 1 cut(s) 500
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 6 cut(s) 173, 279, 372, 375, 541, 609
FspBI CTAG 4 cut(s) 317, 354, 509, 688
GluI GCNGC 6 cut(s) 173, 279, 372, 375, 541, 609
GsaI CCCAGC 3 cut(s) 285, 437, 547
HaeIII GGCC 2 cut(s) 86, 517
HapII CCGG 2 cut(s) 48, 492
HgaI GACGC 1 cut(s) 67
HinfI GANTC 1 cut(s) 102
HpaII CCGG 2 cut(s) 48, 492
HphI GGTGA 6 cut(s) 302, 449, 488, 515, 542, 611
Hpy166II GTNNAC 4 cut(s) 293, 361, 642, 675
Hpy188I TCNGA 2 cut(s) 203, 251
Hpy188III TCNNGA 5 cut(s) 73, 158, 382, 485, 580
Hpy8I GTNNAC 4 cut(s) 293, 361, 642, 675
Hpy99I CGWCG 2 cut(s) 424, 476
HpyAV CCTTC 1 cut(s) 335
HpyCH4III ACNGT 5 cut(s) 228, 476, 482, 605, 622
HpyCH4IV ACGT 2 cut(s) 295, 397
HpyCH4V TGCA 5 cut(s) 189, 220, 311, 405, 608
HpyF10VI GCNNNNNNNGC 1 cut(s) 430
HpyF3I CTNAG 1 cut(s) 680
HpySE526I ACGT 2 cut(s) 295, 397
KpnI GGTACC 1 cut(s) 471
KspI CCGCGG 1 cut(s) 372
Kzo9I GATC 6 cut(s) 302, 326, 410, 414, 505, 645
LmnI GCTCC 1 cut(s) 275
Lsp1109I GCAGC 3 cut(s) 184, 265, 620
LweI GCATC 1 cut(s) 478
MaeI CTAG 4 cut(s) 317, 354, 509, 688
MaeII ACGT 2 cut(s) 295, 397
MaeIII GTNAC 4 cut(s) 398, 437, 476, 599
MalI GATC 6 cut(s) 304, 328, 412, 416, 507, 647
MboI GATC 6 cut(s) 302, 326, 410, 414, 505, 645
MboII GAAGA 3 cut(s) 46, 49, 61
MflI RGATCY 1 cut(s) 326
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 1 cut(s) 387
MmeI TCCRAC 1 cut(s) 253
MnlI CCTC 3 cut(s) 338, 445, 622
MslI CAYNNNNRTG 1 cut(s) 623
MspA1I CMGCKG 1 cut(s) 371
MspI CCGG 2 cut(s) 48, 492
MspR9I CCNGG 3 cut(s) 49, 597, 650
MvaI CCWGG 2 cut(s) 597, 650
MvnI CGCG 2 cut(s) 371, 501
MwoI GCNNNNNNNGC 1 cut(s) 430
NciI CCSGG 1 cut(s) 49
NdeII GATC 6 cut(s) 302, 326, 410, 414, 505, 645
NlaIV GGNNCC 1 cut(s) 469
NmuCI GTSAC 4 cut(s) 398, 437, 476, 599
OliI CACNNNNGTG 1 cut(s) 623
PfeI GAWTC 1 cut(s) 102
PkrI GCNGC 6 cut(s) 174, 280, 373, 376, 542, 610
Psp6I CCWGG 2 cut(s) 595, 648
PspFI CCCAGC 3 cut(s) 281, 433, 543
PspGI CCWGG 2 cut(s) 595, 648
PspN4I GGNNCC 1 cut(s) 469
PspPI GGNCC 4 cut(s) 45, 84, 516, 593
PsuI RGATCY 1 cut(s) 326
RsaI GTAC 3 cut(s) 5, 469, 676
RsaNI GTAC 3 cut(s) 4, 468, 675
RseI CAYNNNNRTG 1 cut(s) 623
SacII CCGCGG 1 cut(s) 372
SatI GCNGC 6 cut(s) 173, 279, 372, 375, 541, 609
Sau3AI GATC 6 cut(s) 302, 326, 410, 414, 505, 645
Sau96I GGNCC 4 cut(s) 45, 84, 516, 593
ScrFI CCNGG 3 cut(s) 49, 597, 650
SduI GDGCHC 1 cut(s) 129
SetI ASST 7 cut(s) 47, 94, 156, 280, 298, 400, 446
SfaNI GCATC 1 cut(s) 478
Sfr303I CCGCGG 1 cut(s) 372
SgrBI CCGCGG 1 cut(s) 372
SinI GGWCC 2 cut(s) 45, 593
SmiMI CAYNNNNRTG 1 cut(s) 623
SmlI CTYRAG 1 cut(s) 73
SmoI CTYRAG 1 cut(s) 73
Sse9I AATT 1 cut(s) 387
SsiI CCGC 6 cut(s) 369, 371, 374, 501, 540, 586
SspMI CTAG 4 cut(s) 317, 354, 509, 688
StyD4I CCNGG 3 cut(s) 47, 595, 648
TaaI ACNGT 5 cut(s) 228, 476, 482, 605, 622
TaiI ACGT 2 cut(s) 298, 400
TaqI TCGA 5 cut(s) 117, 333, 365, 381, 413
TaqII GACCGA 1 cut(s) 539
TasI AATT 1 cut(s) 387
TatI WGTACW 1 cut(s) 674
TauI GCSGC 3 cut(s) 374, 377, 543
TfiI GAWTC 1 cut(s) 102
TseFI GTSAC 4 cut(s) 398, 437, 476, 599
TseI GCWGC 3 cut(s) 172, 278, 608
Tsp45I GTSAC 4 cut(s) 398, 437, 476, 599
VpaK11BI GGWCC 2 cut(s) 45, 593
XapI RAATTY 1 cut(s) 387
XmiI GTMKAC 1 cut(s) 641
XspI CTAG 4 cut(s) 317, 354, 509, 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.